RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 TBC1D8O95759 1140 aa18.75■□□□□ 0.59
LSM1-204ENST00000522515 NAPAP54920 295 aa18.75■□□□□ 0.59
LSM1-204ENST00000522515 DAXXQ9UER7 740 aaPredicted RBP18.75■□□□□ 0.59
LSM1-204ENST00000522515 PNMA2Q9UL42 364 aa18.75■□□□□ 0.59
LSM1-204ENST00000522515 KIF3AQ9Y496 699 aa18.75■□□□□ 0.59
LSM1-204ENST00000522515 ABCB11O95342 1321 aa18.74■□□□□ 0.59
LSM1-204ENST00000522515 TRAF1Q13077 416 aa18.74■□□□□ 0.59
LSM1-204ENST00000522515 MUM1L1Q5H9M0 696 aa18.74■□□□□ 0.59
LSM1-204ENST00000522515 IPO9Q96P70 1041 aaKnown RBP18.74■□□□□ 0.59
LSM1-204ENST00000522515 TRERF1Q96PN7 1200 aa18.74■□□□□ 0.59
LSM1-204ENST00000522515 CFHR5Q9BXR6 569 aa18.74■□□□□ 0.59
LSM1-204ENST00000522515 PORCNQ9H237 461 aa18.74■□□□□ 0.59
LSM1-204ENST00000522515 OPLAHO14841 1288 aa18.73■□□□□ 0.59
LSM1-204ENST00000522515 ERCC3P19447 782 aa18.73■□□□□ 0.59
LSM1-204ENST00000522515 MAP2K1Q02750 393 aaPredicted RBP18.73■□□□□ 0.59
LSM1-204ENST00000522515 NCAPG2Q86XI2 1143 aa18.73■□□□□ 0.59
LSM1-204ENST00000522515 CLEC4DQ8WXI8 215 aa18.73■□□□□ 0.59
LSM1-204ENST00000522515 C8orf76Q96K31 380 aa18.73■□□□□ 0.59
LSM1-204ENST00000522515 SH3GLB2Q9NR46 395 aa18.73■□□□□ 0.59
LSM1-204ENST00000522515 RNF146Q9NTX7 359 aa18.73■□□□□ 0.59
LSM1-204ENST00000522515 KCNJ14Q9UNX9 436 aa18.73■□□□□ 0.59
LSM1-204ENST00000522515 MRPL11Q9Y3B7 192 aaKnown RBP18.73■□□□□ 0.59
LSM1-204ENST00000522515 NFIBO00712 420 aa18.72■□□□□ 0.59
LSM1-204ENST00000522515 SLC25A27O95847 323 aa18.72■□□□□ 0.59
LSM1-204ENST00000522515 XBP1P17861 261 aa18.72■□□□□ 0.59
LSM1-204ENST00000522515 GUCY1B3Q02153 619 aa18.72■□□□□ 0.59
LSM1-204ENST00000522515 TKFCQ3LXA3 575 aa18.72■□□□□ 0.59
LSM1-204ENST00000522515 LARP1BQ659C4 914 aaKnown RBP18.72■□□□□ 0.59
LSM1-204ENST00000522515 PPP1R18Q6NYC8 613 aa18.72■□□□□ 0.59
LSM1-204ENST00000522515 EFCC1Q9HA90 598 aa18.72■□□□□ 0.59
LSM1-204ENST00000522515 SMCO2A6NFE2 343 aa18.72■□□□□ 0.59
LSM1-204ENST00000522515 CCNA1P78396 465 aa18.72■□□□□ 0.59
LSM1-204ENST00000522515 KRT40Q6A162 431 aa18.72■□□□□ 0.59
LSM1-204ENST00000522515 SHCBP1Q8NEM2 672 aa18.72■□□□□ 0.59
LSM1-204ENST00000522515 CCDC148Q8NFR7 591 aa18.72■□□□□ 0.59
LSM1-204ENST00000522515 FBXO18Q8NFZ0 1043 aa18.72■□□□□ 0.59
LSM1-204ENST00000522515 CCDC12Q8WUD4 166 aaPredicted RBP18.72■□□□□ 0.59
LSM1-204ENST00000522515 TBC1D5Q92609 795 aa18.72■□□□□ 0.59
LSM1-204ENST00000522515 PHF20Q9BVI0 1012 aa18.72■□□□□ 0.59
LSM1-204ENST00000522515 ZMYND12Q9H0C1 365 aa18.72■□□□□ 0.59
LSM1-204ENST00000522515 ADAMTS3O15072 1205 aa18.71■□□□□ 0.59
LSM1-204ENST00000522515 SYT1P21579 422 aa18.71■□□□□ 0.59
LSM1-204ENST00000522515 NLRP5P59047 1200 aa18.71■□□□□ 0.59
LSM1-204ENST00000522515 TRIM29Q14134 588 aa18.71■□□□□ 0.59
LSM1-204ENST00000522515 CHST13Q8NET6 341 aa18.71■□□□□ 0.59
LSM1-204ENST00000522515 MROH8Q9H579 483 aa18.71■□□□□ 0.59
LSM1-204ENST00000522515 ACAD9Q9H845 621 aa18.71■□□□□ 0.59
LSM1-204ENST00000522515 CWC22Q9HCG8 908 aaKnown RBP18.71■□□□□ 0.59
LSM1-204ENST00000522515 SAGE1Q9NXZ1 904 aa18.71■□□□□ 0.59
LSM1-204ENST00000522515 ESYT2A0FGR8 921 aa18.7■□□□□ 0.58
LSM1-204ENST00000522515 PDCP20941 246 aa18.7■□□□□ 0.58
LSM1-204ENST00000522515 COPB2P35606 906 aa18.7■□□□□ 0.58
LSM1-204ENST00000522515 NPY5RQ15761 445 aa18.7■□□□□ 0.58
LSM1-204ENST00000522515 WDR78Q5VTH9 848 aa18.7■□□□□ 0.58
LSM1-204ENST00000522515 PSTPIP2Q9H939 334 aa18.7■□□□□ 0.58
LSM1-204ENST00000522515 RIC8AQ9NPQ8 531 aa18.7■□□□□ 0.58
LSM1-204ENST00000522515 WBP1LQ9NX94 342 aa18.7■□□□□ 0.58
LSM1-204ENST00000522515 ECM2O94769 699 aaPredicted RBP18.69■□□□□ 0.58
LSM1-204ENST00000522515 CFBP00751 764 aa18.69■□□□□ 0.58
LSM1-204ENST00000522515 MMP1P03956 469 aa18.69■□□□□ 0.58
LSM1-204ENST00000522515 ADCY7P51828 1080 aa18.69■□□□□ 0.58
LSM1-204ENST00000522515 CCAR1Q8IX12 1150 aaKnown RBP18.69■□□□□ 0.58
LSM1-204ENST00000522515 FAM177A1Q8N128 213 aaPredicted RBP18.69■□□□□ 0.58
LSM1-204ENST00000522515 BEGAINQ9BUH8 593 aa18.69■□□□□ 0.58
LSM1-204ENST00000522515 C6orf50Q9HD87 102 aa18.69■□□□□ 0.58
LSM1-204ENST00000522515 FBXO40Q9UH90 709 aa18.69■□□□□ 0.58
LSM1-204ENST00000522515 USP17L6PQ6QN14 398 aa18.68■□□□□ 0.58
LSM1-204ENST00000522515 NSMFQ6X4W1 530 aa18.68■□□□□ 0.58
LSM1-204ENST00000522515 MCF2L2Q86YR7 1114 aa18.68■□□□□ 0.58
LSM1-204ENST00000522515 CUL5Q93034 780 aa18.68■□□□□ 0.58
LSM1-204ENST00000522515 PCDHA4Q9UN74 947 aa18.68■□□□□ 0.58
LSM1-204ENST00000522515 H3BQV1 296 aa18.68■□□□□ 0.58
LSM1-204ENST00000522515 MEIS2O14770 477 aa18.68■□□□□ 0.58
LSM1-204ENST00000522515 CALML3P27482 149 aa18.68■□□□□ 0.58
LSM1-204ENST00000522515 GNA11P29992 359 aa18.68■□□□□ 0.58
LSM1-204ENST00000522515 MAPK4P31152 587 aa18.68■□□□□ 0.58
LSM1-204ENST00000522515 HOXA13P31271 388 aaPredicted RBP18.68■□□□□ 0.58
LSM1-204ENST00000522515 MRPL12P52815 198 aaKnown RBP18.68■□□□□ 0.58
LSM1-204ENST00000522515 UBE2SQ16763 222 aa18.68■□□□□ 0.58
LSM1-204ENST00000522515 IFFO2Q5TF58 517 aa18.68■□□□□ 0.58
LSM1-204ENST00000522515 RGS22Q8NE09 1264 aa18.68■□□□□ 0.58
LSM1-204ENST00000522515 OXER1Q8TDS5 423 aa18.68■□□□□ 0.58
LSM1-204ENST00000522515 A1CFQ9NQ94 594 aaKnown RBP18.68■□□□□ 0.58
LSM1-204ENST00000522515 TSKSQ9UJT2 592 aa18.68■□□□□ 0.58
LSM1-204ENST00000522515 RBBP6Q7Z6E9 1792 aaKnown RBP18.67■□□□□ 0.58
LSM1-204ENST00000522515 VPS37CA5D8V6 355 aaPredicted RBP18.67■□□□□ 0.58
LSM1-204ENST00000522515 GCOM1H8Y6P7 765 aaPredicted RBP18.67■□□□□ 0.58
LSM1-204ENST00000522515 GPR25O00155 361 aa18.67■□□□□ 0.58
LSM1-204ENST00000522515 STX6O43752 255 aa18.67■□□□□ 0.58
LSM1-204ENST00000522515 POLR2MP0CAP2 368 aa18.67■□□□□ 0.58
LSM1-204ENST00000522515 CTGFP29279 349 aa18.67■□□□□ 0.58
LSM1-204ENST00000522515 DDIT3P35638 169 aa18.67■□□□□ 0.58
LSM1-204ENST00000522515 HSD17B4P51659 736 aa18.67■□□□□ 0.58
LSM1-204ENST00000522515 RPS6P62753 249 aaKnown RBP18.67■□□□□ 0.58
LSM1-204ENST00000522515 SP3Q02447 781 aa18.67■□□□□ 0.58
LSM1-204ENST00000522515 GHRHRQ02643 423 aa18.67■□□□□ 0.58
LSM1-204ENST00000522515 GALNT17Q6IS24 598 aa18.67■□□□□ 0.58
LSM1-204ENST00000522515 RNF207Q6ZRF8 634 aa18.67■□□□□ 0.58
LSM1-204ENST00000522515 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.67■□□□□ 0.58
LSM1-204ENST00000522515 GPR142Q7Z601 462 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms