RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 LLGL1Q15334 1064 aa13.96□□□□□ -0.18
USP53-209ENST00000514665 PAXIP1Q6ZW49 1069 aaPredicted RBP13.96□□□□□ -0.18
USP53-209ENST00000514665 TXNDC16Q9P2K2 825 aa13.96□□□□□ -0.18
USP53-209ENST00000514665 EXOC7Q9UPT5 735 aa13.96□□□□□ -0.18
USP53-209ENST00000514665 TAF6LQ9Y6J9 622 aa13.96□□□□□ -0.18
USP53-209ENST00000514665 ARHGAP31Q2M1Z3 1444 aa13.96□□□□□ -0.18
USP53-209ENST00000514665 PHLPP2Q6ZVD8 1323 aa13.96□□□□□ -0.18
USP53-209ENST00000514665 PRPF3O43395 683 aaKnown RBP13.95□□□□□ -0.18
USP53-209ENST00000514665 CDC27P30260 824 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 ZNF658Q5TYW1 1059 aaPredicted RBP13.95□□□□□ -0.18
USP53-209ENST00000514665 KCTD1Q719H9 257 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 OXER1Q8TDS5 423 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 MADDQ8WXG6 1647 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 TNNI1P19237 187 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 STRN3Q13033 797 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 TRPC3Q13507 836 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 LIN9Q5TKA1 542 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 ZNF354CQ86Y25 554 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 MSANTD4Q8NCY6 345 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 NEDD4P46934 1319 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 PPIP5K2O43314 1243 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 ATP2A2P16615 1042 aaKnown RBP13.95□□□□□ -0.18
USP53-209ENST00000514665 NR2F2P24468 414 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 UBXN2AP68543 259 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 MAP3K9P80192 1104 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 KSR1Q8IVT5 923 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 PPM1EQ8WY54 764 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 DHTKD1Q96HY7 919 aaPredicted RBP13.95□□□□□ -0.18
USP53-209ENST00000514665 FAM204AQ9H8W3 233 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 A6NNZ2 444 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 IFNB1P01574 187 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 CYP2D6P10635 497 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 ALAS1P13196 640 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 PLCG1P19174 1290 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 MECOMQ03112 1051 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 KRT31Q15323 416 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 TUBB8Q3ZCM7 444 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 TBC1D10BQ4KMP7 808 aaPredicted RBP13.95□□□□□ -0.18
USP53-209ENST00000514665 FAN1Q9Y2M0 1017 aa13.95□□□□□ -0.18
USP53-209ENST00000514665 NBPF26B4DH59 902 aa13.94□□□□□ -0.18
USP53-209ENST00000514665 MRPS25P82663 173 aaKnown RBP13.94□□□□□ -0.18
USP53-209ENST00000514665 EXOC3L4Q17RC7 722 aa13.94□□□□□ -0.18
USP53-209ENST00000514665 NBPF10Q6P3W6 841 aaKnown RBP13.94□□□□□ -0.18
USP53-209ENST00000514665 MIER3Q7Z3K6 550 aa13.94□□□□□ -0.18
USP53-209ENST00000514665 MB21D2Q8IYB1 491 aaPredicted RBP13.94□□□□□ -0.18
USP53-209ENST00000514665 PPM1KQ8N3J5 372 aa13.94□□□□□ -0.18
USP53-209ENST00000514665 NBPF15Q8N660 670 aa13.94□□□□□ -0.18
USP53-209ENST00000514665 GPR101Q96P66 508 aaPredicted RBP13.94□□□□□ -0.18
USP53-209ENST00000514665 MAK16Q9BXY0 300 aaKnown RBP13.94□□□□□ -0.18
USP53-209ENST00000514665 SRP68Q9UHB9 627 aaKnown RBP13.94□□□□□ -0.18
USP53-209ENST00000514665 COL4A3BPQ9Y5P4 624 aa13.94□□□□□ -0.18
USP53-209ENST00000514665 VGLL3A8MV65 326 aa13.94□□□□□ -0.18
USP53-209ENST00000514665 ALDH3A1P30838 453 aa13.94□□□□□ -0.18
USP53-209ENST00000514665 FKBP3Q00688 224 aaKnown RBP13.94□□□□□ -0.18
USP53-209ENST00000514665 RESP18Q5W5W9 173 aa13.94□□□□□ -0.18
USP53-209ENST00000514665 ANKRD42Q8N9B4 389 aa13.94□□□□□ -0.18
USP53-209ENST00000514665 CHURC1Q8WUH1 139 aa13.94□□□□□ -0.18
USP53-209ENST00000514665 KRT12Q99456 494 aa13.94□□□□□ -0.18
USP53-209ENST00000514665 PICK1Q9NRD5 415 aa13.94□□□□□ -0.18
USP53-209ENST00000514665 TESPA1A2RU30 521 aaPredicted RBP13.94□□□□□ -0.18
USP53-209ENST00000514665 CCDC151A5D8V7 595 aa13.94□□□□□ -0.18
USP53-209ENST00000514665 ERVV-1B6SEH8 477 aa13.94□□□□□ -0.18
USP53-209ENST00000514665 NDUFA10O95299 355 aa13.94□□□□□ -0.18
USP53-209ENST00000514665 PRDX5P30044 214 aa13.94□□□□□ -0.18
USP53-209ENST00000514665 DENND2CQ68D51 928 aa13.94□□□□□ -0.18
USP53-209ENST00000514665 FAM196AQ6ZSG2 479 aa13.94□□□□□ -0.18
USP53-209ENST00000514665 VSIG1Q86XK7 387 aa13.94□□□□□ -0.18
USP53-209ENST00000514665 LARSQ9P2J5 1176 aaKnown RBP13.94□□□□□ -0.18
USP53-209ENST00000514665 FOXN1O15353 648 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 SORBS3O60504 671 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 KRT15P19012 456 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 LIG3P49916 1009 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 PLA2G4DQ86XP0 818 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 PLCD3Q8N3E9 789 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 CCDC97Q96F63 343 aaPredicted RBP13.93□□□□□ -0.18
USP53-209ENST00000514665 MED4Q9NPJ6 270 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 NPHP4O75161 1426 aaPredicted RBP13.93□□□□□ -0.18
USP53-209ENST00000514665 UNC13BO14795 1591 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 TCP10L2B9ZVM9 353 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 SEMA3EO15041 775 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 RGS16O15492 202 aaPredicted RBP13.93□□□□□ -0.18
USP53-209ENST00000514665 PPP1R21Q6ZMI0 780 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 POTEDQ86YR6 584 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 RAB17Q9H0T7 212 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.93□□□□□ -0.18
USP53-209ENST00000514665 XDHP47989 1333 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 MEIS1O00470 390 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 CCNE1P24864 410 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 LACTBP83111 547 aaPredicted RBP13.93□□□□□ -0.18
USP53-209ENST00000514665 ODR4Q5SWX8 454 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 FAM71BQ8TC56 605 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.93□□□□□ -0.18
USP53-209ENST00000514665 CEP63Q96MT8 703 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 CAPS2Q9BXY5 557 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 SWAP70Q9UH65 585 aa13.93□□□□□ -0.18
USP53-209ENST00000514665 CFAP74Q9C0B2 1584 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 PNMA6AP0CW24 399 aaPredicted RBP13.92□□□□□ -0.18
USP53-209ENST00000514665 ATP5DP30049 168 aa13.92□□□□□ -0.18
USP53-209ENST00000514665 ARL1P40616 181 aaPredicted RBP13.92□□□□□ -0.18
USP53-209ENST00000514665 NAA25Q14CX7 972 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms