RNA–Protein interactions for RNA: ENST00000513769.5

TPM3-221, Transcript of tropomyosin 3, humanhuman

TSL 3

Gene TPM3, Length 539 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-221ENST00000513769 TMEM39BQ9GZU3 492 aa11.33□□□□□ -0.6
TPM3-221ENST00000513769 GOPCQ9HD26 462 aa11.33□□□□□ -0.6
TPM3-221ENST00000513769 ADARB2Q9NS39 739 aaKnown RBP11.33□□□□□ -0.6
TPM3-221ENST00000513769 HACL1Q9UJ83 578 aa11.33□□□□□ -0.6
TPM3-221ENST00000513769 PNMA2Q9UL42 364 aa11.33□□□□□ -0.6
TPM3-221ENST00000513769 NOL7Q9UMY1 257 aaKnown RBP11.33□□□□□ -0.6
TPM3-221ENST00000513769 PCDHA4Q9UN74 947 aa11.33□□□□□ -0.6
TPM3-221ENST00000513769 TCHHQ07283 1943 aa11.33□□□□□ -0.6
TPM3-221ENST00000513769 CMA1P23946 247 aa11.32□□□□□ -0.6
TPM3-221ENST00000513769 DNAJB2P25686 324 aa11.32□□□□□ -0.6
TPM3-221ENST00000513769 MRPL12P52815 198 aaKnown RBP11.32□□□□□ -0.6
TPM3-221ENST00000513769 ORC2Q13416 577 aaPredicted RBP11.32□□□□□ -0.6
TPM3-221ENST00000513769 STK38Q15208 465 aa11.32□□□□□ -0.6
TPM3-221ENST00000513769 FOXD4L6Q3SYB3 417 aaPredicted RBP11.32□□□□□ -0.6
TPM3-221ENST00000513769 PPP1R18Q6NYC8 613 aa11.32□□□□□ -0.6
TPM3-221ENST00000513769 FAM173BQ6P4H8 233 aa11.32□□□□□ -0.6
TPM3-221ENST00000513769 FOXD4L3Q6VB84 417 aaPredicted RBP11.32□□□□□ -0.6
TPM3-221ENST00000513769 USP50Q70EL3 339 aaPredicted RBP11.32□□□□□ -0.6
TPM3-221ENST00000513769 ELOA2Q8IYF1 753 aaPredicted RBP11.32□□□□□ -0.6
TPM3-221ENST00000513769 BLIDQ8IZY5 108 aa11.32□□□□□ -0.6
TPM3-221ENST00000513769 TESPA1A2RU30 521 aaPredicted RBP11.31□□□□□ -0.6
TPM3-221ENST00000513769 ZBTB5O15062 677 aa11.31□□□□□ -0.6
TPM3-221ENST00000513769 CTAGE5O15320 804 aa11.31□□□□□ -0.6
TPM3-221ENST00000513769 DTNBO60941 627 aa11.31□□□□□ -0.6
TPM3-221ENST00000513769 PPFIA3O75145 1194 aa11.31□□□□□ -0.6
TPM3-221ENST00000513769 GADD45BO75293 160 aaPredicted RBP11.31□□□□□ -0.6
TPM3-221ENST00000513769 FDX1P10109 184 aa11.31□□□□□ -0.6
TPM3-221ENST00000513769 BMP3P12645 472 aa11.31□□□□□ -0.6
TPM3-221ENST00000513769 TBC1D10BQ4KMP7 808 aaPredicted RBP11.31□□□□□ -0.6
TPM3-221ENST00000513769 ADGRF4Q8IZF3 695 aa11.31□□□□□ -0.6
TPM3-221ENST00000513769 ZNF516Q92618 1163 aa11.31□□□□□ -0.6
TPM3-221ENST00000513769 LPAR1Q92633 364 aa11.31□□□□□ -0.6
TPM3-221ENST00000513769 ZNF341Q9BYN7 854 aa11.31□□□□□ -0.6
TPM3-221ENST00000513769 JMJD4Q9H9V9 463 aa11.31□□□□□ -0.6
TPM3-221ENST00000513769 GDPD2Q9HCC8 539 aa11.31□□□□□ -0.6
TPM3-221ENST00000513769 GJB4Q9NTQ9 266 aa11.31□□□□□ -0.6
TPM3-221ENST00000513769 VPS54Q9P1Q0 977 aa11.31□□□□□ -0.6
TPM3-221ENST00000513769 KCNJ14Q9UNX9 436 aa11.31□□□□□ -0.6
TPM3-221ENST00000513769 SBF1O95248 1867 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 SMCO2A6NFE2 343 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 KIF28PB7ZC32 967 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 C19orf81C9J6K1 198 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 M0R2N6 131 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 LAD1O00515 517 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 CUTAO60888 179 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 HSPA1AP0DMV8 641 aaKnown RBP11.3□□□□□ -0.6
TPM3-221ENST00000513769 HSPA1BP0DMV9 641 aaKnown RBP11.3□□□□□ -0.6
TPM3-221ENST00000513769 ME1P48163 572 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 USP14P54578 494 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 ATP2B2Q01814 1243 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 PTPAQ15257 358 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 NPY5RQ15761 445 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 CCDC183Q5T5S1 534 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 ARL6IP4Q66PJ3 421 aaKnown RBP11.3□□□□□ -0.6
TPM3-221ENST00000513769 MIGA2Q7L4E1 593 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 FAM160B2Q86V87 743 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 SAMD3Q8N6K7 520 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 TNFRSF25Q93038 417 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 FERMT2Q96AC1 680 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 DCPSQ96C86 337 aaKnown RBP11.3□□□□□ -0.6
TPM3-221ENST00000513769 PGBD1Q96JS3 809 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 TIGD1Q96MW7 591 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 WDR18Q9BV38 432 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 MAF1Q9H063 256 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 AS3MTQ9HBK9 375 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 DDX19AQ9NUU7 478 aaKnown RBP11.3□□□□□ -0.6
TPM3-221ENST00000513769 ZBTB21Q9ULJ3 1066 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 PCDHA7Q9UN72 937 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 CLIC4Q9Y696 253 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 GREB1LQ9C091 1923 aaPredicted RBP11.3□□□□□ -0.6
TPM3-221ENST00000513769 ZNF541Q9H0D2 1346 aa11.3□□□□□ -0.6
TPM3-221ENST00000513769 MYH8P13535 1937 aa11.29□□□□□ -0.6
TPM3-221ENST00000513769 FAM237AA0A1B0GTK4 181 aa11.29□□□□□ -0.6
TPM3-221ENST00000513769 UNCXA6NJT0 531 aa11.29□□□□□ -0.6
TPM3-221ENST00000513769 TRIM75PA6NK02 468 aa11.29□□□□□ -0.6
TPM3-221ENST00000513769 STXBP3O00186 592 aa11.29□□□□□ -0.6
TPM3-221ENST00000513769 DDNO94850 711 aaPredicted RBP11.29□□□□□ -0.6
TPM3-221ENST00000513769 GOLGA8HP0CJ92 632 aa11.29□□□□□ -0.6
TPM3-221ENST00000513769 EPS15P42566 896 aa11.29□□□□□ -0.6
TPM3-221ENST00000513769 TOB1P50616 345 aaPredicted RBP11.29□□□□□ -0.6
TPM3-221ENST00000513769 RRP1BQ14684 758 aaKnown RBP11.29□□□□□ -0.6
TPM3-221ENST00000513769 L1TD1Q5T7N2 865 aaKnown RBP11.29□□□□□ -0.6
TPM3-221ENST00000513769 ANGEL2Q5VTE6 544 aaKnown RBP11.29□□□□□ -0.6
TPM3-221ENST00000513769 CAVIN1Q6NZI2 390 aaKnown RBP11.29□□□□□ -0.6
TPM3-221ENST00000513769 KRT25Q7Z3Z0 450 aa11.29□□□□□ -0.6
TPM3-221ENST00000513769 PNMA8AQ86V59 439 aaPredicted RBP11.29□□□□□ -0.6
TPM3-221ENST00000513769 LRRC47Q8N1G4 583 aaKnown RBP11.29□□□□□ -0.6
TPM3-221ENST00000513769 PIGSQ96S52 555 aa11.29□□□□□ -0.6
TPM3-221ENST00000513769 NAP1L4Q99733 375 aaKnown RBP11.29□□□□□ -0.6
TPM3-221ENST00000513769 UBA5Q9GZZ9 404 aa11.29□□□□□ -0.6
TPM3-221ENST00000513769 KIAA1683Q9H0B3 1180 aa11.29□□□□□ -0.6
TPM3-221ENST00000513769 VCPKMTQ9H867 229 aa11.29□□□□□ -0.6
TPM3-221ENST00000513769 VAT1LQ9HCJ6 419 aa11.29□□□□□ -0.6
TPM3-221ENST00000513769 FEM1BQ9UK73 627 aa11.29□□□□□ -0.6
TPM3-221ENST00000513769 SRPRBQ9Y5M8 271 aaKnown RBP11.29□□□□□ -0.6
TPM3-221ENST00000513769 CCDC194A0A1B0GVG4 234 aa11.28□□□□□ -0.6
TPM3-221ENST00000513769 A0A1W2PRG0 241 aa11.28□□□□□ -0.6
TPM3-221ENST00000513769 IQCA1LA6NCM1 817 aa11.28□□□□□ -0.6
TPM3-221ENST00000513769 UBE2Q2LH0YL09 131 aa11.28□□□□□ -0.6
TPM3-221ENST00000513769 GDF11O95390 407 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms