RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 PPP2R5EQ16537 467 aa12.37□□□□□ -0.43
TCOF1-211ENST00000513346 WHAMMQ8TF30 809 aa12.37□□□□□ -0.43
TCOF1-211ENST00000513346 TBC1D22AQ8WUA7 517 aa12.37□□□□□ -0.43
TCOF1-211ENST00000513346 NLRC4Q9NPP4 1024 aa12.37□□□□□ -0.43
TCOF1-211ENST00000513346 BCS1LQ9Y276 419 aa12.37□□□□□ -0.43
TCOF1-211ENST00000513346 STX2P32856 288 aa12.37□□□□□ -0.43
TCOF1-211ENST00000513346 ANKRD13CQ8N6S4 541 aa12.37□□□□□ -0.43
TCOF1-211ENST00000513346 MGARPQ8TDB4 240 aa12.37□□□□□ -0.43
TCOF1-211ENST00000513346 HNRNPLLQ8WVV9 542 aaKnown RBP12.37□□□□□ -0.43
TCOF1-211ENST00000513346 NOP53Q9NZM5 478 aaKnown RBP12.37□□□□□ -0.43
TCOF1-211ENST00000513346 KIF3CO14782 793 aa12.37□□□□□ -0.43
TCOF1-211ENST00000513346 FLOT1O75955 427 aa12.37□□□□□ -0.43
TCOF1-211ENST00000513346 ELF1P32519 619 aa12.37□□□□□ -0.43
TCOF1-211ENST00000513346 ZNF365Q70YC5 407 aa12.37□□□□□ -0.43
TCOF1-211ENST00000513346 GSTA5Q7RTV2 222 aa12.37□□□□□ -0.43
TCOF1-211ENST00000513346 TCHPQ9BT92 498 aa12.37□□□□□ -0.43
TCOF1-211ENST00000513346 FUT8Q9BYC5 575 aa12.37□□□□□ -0.43
TCOF1-211ENST00000513346 INTS9Q9NV88 658 aaKnown RBP12.37□□□□□ -0.43
TCOF1-211ENST00000513346 PARP2Q9UGN5 583 aa12.37□□□□□ -0.43
TCOF1-211ENST00000513346 ZBTB1Q9Y2K1 713 aa12.37□□□□□ -0.43
TCOF1-211ENST00000513346 AXIN2Q9Y2T1 843 aa12.37□□□□□ -0.43
TCOF1-211ENST00000513346 SETD1BQ9UPS6 1966 aaKnown RBP12.37□□□□□ -0.43
TCOF1-211ENST00000513346 MEFVO15553 781 aaPredicted RBP12.36□□□□□ -0.43
TCOF1-211ENST00000513346 CTNND1O60716 968 aaKnown RBP12.36□□□□□ -0.43
TCOF1-211ENST00000513346 EEF1GP26641 437 aaKnown RBP12.36□□□□□ -0.43
TCOF1-211ENST00000513346 LETM2Q2VYF4 491 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 VPS52Q8N1B4 723 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 KLHL29Q96CT2 875 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 GJD4Q96KN9 370 aaPredicted RBP12.36□□□□□ -0.43
TCOF1-211ENST00000513346 ALDH8A1Q9H2A2 487 aaPredicted RBP12.36□□□□□ -0.43
TCOF1-211ENST00000513346 ATP6V0A2Q9Y487 856 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 FGAP02671 866 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 BIRC2Q13490 618 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 SH2D4BQ5SQS7 431 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 CSRNP2Q9H175 543 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 GREM2Q9H772 168 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 CNOT10Q9H9A5 744 aaKnown RBP12.36□□□□□ -0.43
TCOF1-211ENST00000513346 VPS54Q9P1Q0 977 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 SERPINA10Q9UK55 444 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 TPX2Q9ULW0 747 aaKnown RBP12.36□□□□□ -0.43
TCOF1-211ENST00000513346 TULP4Q9NRJ4 1543 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 TNS3Q68CZ2 1445 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 DIP2CQ9Y2E4 1556 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 RPN1P04843 607 aaKnown RBP12.36□□□□□ -0.43
TCOF1-211ENST00000513346 GRAMD1CQ8IYS0 662 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 ANKRD42Q8N9B4 389 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.36□□□□□ -0.43
TCOF1-211ENST00000513346 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.36□□□□□ -0.438e-6■■■■■ 36.2
TCOF1-211ENST00000513346 LMTK2Q8IWU2 1503 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 MAP3K15Q6ZN16 1313 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 SEMA3EO15041 775 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 SLC7A5Q01650 507 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 PHLDB2Q86SQ0 1253 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 MAPKAPK5Q8IW41 473 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 UBL4BQ8N7F7 174 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 SYMPKQ92797 1274 aaKnown RBP12.36□□□□□ -0.43
TCOF1-211ENST00000513346 ARHGEF10LQ9HCE6 1279 aa12.36□□□□□ -0.43
TCOF1-211ENST00000513346 TAF11Q15544 211 aa12.35□□□□□ -0.43
TCOF1-211ENST00000513346 RASIP1Q5U651 963 aa12.35□□□□□ -0.43
TCOF1-211ENST00000513346 PARP9Q8IXQ6 854 aa12.35□□□□□ -0.43
TCOF1-211ENST00000513346 CCDC65Q8IXS2 484 aa12.35□□□□□ -0.43
TCOF1-211ENST00000513346 TUBGCP2Q9BSJ2 902 aa12.35□□□□□ -0.43
TCOF1-211ENST00000513346 BEGAINQ9BUH8 593 aa12.35□□□□□ -0.43
TCOF1-211ENST00000513346 ADORA1P30542 326 aa12.35□□□□□ -0.43
TCOF1-211ENST00000513346 MAP7Q14244 749 aa12.35□□□□□ -0.43
TCOF1-211ENST00000513346 CEP128Q6ZU80 1094 aa12.35□□□□□ -0.43
TCOF1-211ENST00000513346 DPH5Q9H2P9 285 aa12.35□□□□□ -0.43
TCOF1-211ENST00000513346 QRICH2Q9H0J4 1663 aa12.35□□□□□ -0.43
TCOF1-211ENST00000513346 RPL13P26373 211 aaKnown RBP12.35□□□□□ -0.43
TCOF1-211ENST00000513346 HNRNPH1P31943 449 aaKnown RBP12.35□□□□□ -0.43
TCOF1-211ENST00000513346 IRX1P78414 480 aaPredicted RBP12.35□□□□□ -0.43
TCOF1-211ENST00000513346 EHHADHQ08426 723 aa12.35□□□□□ -0.43
TCOF1-211ENST00000513346 ZMYM1Q5SVZ6 1142 aa12.35□□□□□ -0.43
TCOF1-211ENST00000513346 PHLDB3Q6NSJ2 640 aa12.35□□□□□ -0.43
TCOF1-211ENST00000513346 SMYD4Q8IYR2 804 aaPredicted RBP12.35□□□□□ -0.43
TCOF1-211ENST00000513346 RNF168Q8IYW5 571 aaPredicted RBP12.35□□□□□ -0.43
TCOF1-211ENST00000513346 RPUSD2Q8IZ73 545 aaKnown RBP12.35□□□□□ -0.43
TCOF1-211ENST00000513346 PPRC1Q5VV67 1664 aaKnown RBP12.35□□□□□ -0.43
TCOF1-211ENST00000513346 TARSL2A2RTX5 802 aaKnown RBP12.34□□□□□ -0.43
TCOF1-211ENST00000513346 CYP27B1O15528 508 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 IL6STP40189 918 aaPredicted RBP12.34□□□□□ -0.43
TCOF1-211ENST00000513346 GTF2IP78347 998 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 SEPT6Q14141 434 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 HS2ST1Q7LGA3 356 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 FOXP1Q9H334 677 aaPredicted RBP12.34□□□□□ -0.43
TCOF1-211ENST00000513346 PICK1Q9NRD5 415 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 AMFRQ9UKV5 643 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 SETBP1Q9Y6X0 1596 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 ANO9A1A5B4 782 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 FAM13AO94988 1023 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 PDE6AP16499 860 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 TNFAIP3P21580 790 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 GLE1Q53GS7 698 aaKnown RBP12.34□□□□□ -0.43
TCOF1-211ENST00000513346 DCAF17Q5H9S7 520 aaPredicted RBP12.34□□□□□ -0.43
TCOF1-211ENST00000513346 MFSD14BQ5SR56 506 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 USPL1Q5W0Q7 1092 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 RESP18Q5W5W9 173 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 CCDC62Q6P9F0 684 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 DPF2Q92785 391 aa12.34□□□□□ -0.43
TCOF1-211ENST00000513346 VCX3BQ9H321 246 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms