RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 KATNAL1Q9BW62 490 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 CCDC68Q9H2F9 335 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 TMEM206Q9H813 350 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 ZHX2Q9Y6X8 837 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 COL15A1P39059 1388 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 RNF8O76064 485 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 HSPD1P10809 573 aaKnown RBP4.67□□□□□ -1.66
VCAN-209ENST00000513016 PSMC4P43686 418 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 DNM1Q05193 864 aaKnown RBP4.67□□□□□ -1.66
VCAN-209ENST00000513016 ANO6Q4KMQ2 910 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 PDXDC2PQ6P474 469 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 BARGINQ6ZT62 677 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 ZSCAN30Q86W11 494 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 SPATA24Q86W54 205 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 ARFGAP2Q8N6H7 521 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 FBF1Q8TES7 1133 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 SDR42E1Q8WUS8 393 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 TBRG4Q969Z0 631 aaKnown RBP eCLIP4.67□□□□□ -1.66
VCAN-209ENST00000513016 MAP3K4Q9Y6R4 1608 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 WDR64B1ANS9 1081 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 MED7O43513 233 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 STAM2O75886 525 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 GDF11O95390 407 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 TRAPPC10P48553 1259 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 RNF139Q8WU17 664 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 POMGNT1Q8WZA1 660 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 CEP170P1Q96L14 293 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 NCAPGQ9BPX3 1015 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 KMT5AQ9NQR1 393 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 TOPORSQ9NS56 1045 aaPredicted RBP4.67□□□□□ -1.66
VCAN-209ENST00000513016 TRMT1Q9NXH9 659 aaKnown RBP4.67□□□□□ -1.66
VCAN-209ENST00000513016 TRIM35Q9UPQ4 493 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 ABCB11O95342 1321 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 AKR1B15C9JRZ8 316 aaPredicted RBP4.67□□□□□ -1.66
VCAN-209ENST00000513016 MAP3K7O43318 606 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 JAK3P52333 1124 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 SLFN12LQ6IEE8 588 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 STYK1Q6J9G0 422 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 CATSPER4Q7RTX7 472 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 FBXO41Q8TF61 875 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 KIF9Q9HAQ2 790 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 GINM1Q9NU53 330 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 HERC5Q9UII4 1024 aaKnown RBP4.67□□□□□ -1.66
VCAN-209ENST00000513016 PTCH1Q13635 1447 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 STAT1P42224 750 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 LRRC24Q50LG9 513 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 MIGA2Q7L4E1 593 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 TSKSQ9UJT2 592 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 SAMD9LQ8IVG5 1584 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 ZMYM6O95789 1325 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 DENND3A2RUS2 1198 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 C19orf81C9J6K1 198 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 ADCY5O95622 1261 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 CETPP11597 493 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 XRCC5P13010 732 aaKnown RBP4.67□□□□□ -1.66
VCAN-209ENST00000513016 LONP1P36776 959 aaKnown RBP4.67□□□□□ -1.66
VCAN-209ENST00000513016 RNF219Q5W0B1 726 aaPredicted RBP4.67□□□□□ -1.66
VCAN-209ENST00000513016 NELFCDQ8IXH7 590 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 CCDC89Q8N998 374 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 LRRC4Q9HBW1 653 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 PANK4Q9NVE7 773 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 VPS54Q9P1Q0 977 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 LDHAP00338 332 aaKnown RBP4.67□□□□□ -1.66
VCAN-209ENST00000513016 NNMTP40261 264 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 ARPP19P56211 112 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 ITKQ08881 620 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 NFX1Q12986 1120 aaKnown RBP4.67□□□□□ -1.66
VCAN-209ENST00000513016 GIMAP6Q6P9H5 292 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 PALM2Q8IXS6 379 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 VPS52Q8N1B4 723 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 TRIM11Q96F44 468 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 FAM227BQ96M60 508 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 AK8Q96MA6 479 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 PAIP2Q9BPZ3 127 aaKnown RBP4.67□□□□□ -1.66
VCAN-209ENST00000513016 CD209Q9NNX6 404 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 RAB20Q9NX57 234 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 USTQ9Y2C2 406 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 KAT6BQ8WYB5 2073 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 CFAP43Q8NDM7 1665 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 SYT1P21579 422 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 RECQLP46063 649 aaPredicted RBP4.67□□□□□ -1.66
VCAN-209ENST00000513016 IFRD2Q12894 506 aaPredicted RBP4.67□□□□□ -1.66
VCAN-209ENST00000513016 KYAT1Q16773 422 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 RYBPQ8N488 228 aaPredicted RBP4.67□□□□□ -1.66
VCAN-209ENST00000513016 NSUN6Q8TEA1 469 aaKnown RBP4.67□□□□□ -1.66
VCAN-209ENST00000513016 C2orf40Q9H1Z8 148 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 SNX14Q9Y5W7 946 aa4.67□□□□□ -1.66
VCAN-209ENST00000513016 ALDH1A1P00352 501 aa4.66□□□□□ -1.66
VCAN-209ENST00000513016 VAV2P52735 878 aa4.66□□□□□ -1.66
VCAN-209ENST00000513016 FCGRTP55899 365 aa4.66□□□□□ -1.66
VCAN-209ENST00000513016 AP3B2Q13367 1082 aa4.66□□□□□ -1.66
VCAN-209ENST00000513016 VEPH1Q14D04 833 aa4.66□□□□□ -1.66
VCAN-209ENST00000513016 GBP6Q6ZN66 633 aa4.66□□□□□ -1.66
VCAN-209ENST00000513016 OTUD5Q96G74 571 aa4.66□□□□□ -1.66
VCAN-209ENST00000513016 CFAP57Q96MR6 1250 aa4.66□□□□□ -1.66
VCAN-209ENST00000513016 SLITRK6Q9H5Y7 841 aa4.66□□□□□ -1.66
VCAN-209ENST00000513016 RPF1Q9H9Y2 349 aaKnown RBP4.66□□□□□ -1.66
VCAN-209ENST00000513016 SEC31BQ9NQW1 1179 aa4.66□□□□□ -1.66
VCAN-209ENST00000513016 ANAPC5Q9UJX4 755 aa4.66□□□□□ -1.66
VCAN-209ENST00000513016 FARP1Q9Y4F1 1045 aaPredicted RBP4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms