RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 ACAD9Q9H845 621 aa13.2□□□□□ -0.3
LIMCH1-214ENST00000512228 FBXO40Q9UH90 709 aa13.2□□□□□ -0.3
LIMCH1-214ENST00000512228 NFIBO00712 420 aa13.19□□□□□ -0.3
LIMCH1-214ENST00000512228 KIAA0355O15063 1070 aa13.19□□□□□ -0.3
LIMCH1-214ENST00000512228 ASGR1P07306 291 aa13.19□□□□□ -0.3
LIMCH1-214ENST00000512228 C6orf222P0C671 652 aaPredicted RBP13.19□□□□□ -0.3
LIMCH1-214ENST00000512228 GOLGA8HP0CJ92 632 aa13.19□□□□□ -0.3
LIMCH1-214ENST00000512228 SMPD1P17405 629 aa13.19□□□□□ -0.3
LIMCH1-214ENST00000512228 GJA9P57773 515 aa13.19□□□□□ -0.3
LIMCH1-214ENST00000512228 IRX6P78412 446 aaPredicted RBP13.19□□□□□ -0.3
LIMCH1-214ENST00000512228 BAATQ14032 418 aaPredicted RBP13.19□□□□□ -0.3
LIMCH1-214ENST00000512228 CCDC96Q2M329 555 aa13.19□□□□□ -0.3
LIMCH1-214ENST00000512228 GPR153Q6NV75 609 aa13.19□□□□□ -0.3
LIMCH1-214ENST00000512228 DCAF4Q8WV16 495 aa13.19□□□□□ -0.3
LIMCH1-214ENST00000512228 FAM161BQ96MY7 647 aa13.19□□□□□ -0.3
LIMCH1-214ENST00000512228 GNEQ9Y223 722 aaKnown RBP13.19□□□□□ -0.3
LIMCH1-214ENST00000512228 GRIN2DO15399 1336 aa13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 ICAM1P05362 532 aa13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 CLTBP09497 229 aa13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 SNHG28P0DPA3 235 aa13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 FDX1P10109 184 aa13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 CST5P28325 142 aaPredicted RBP13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 NKX3-2P78367 333 aa13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 TNFAIP2Q03169 654 aa13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 GNASQ5JWF2 1037 aa13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 SYDE2Q5VT97 1194 aa13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 MFSD6Q6ZSS7 791 aa13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 C16orf59Q7L2K0 433 aa13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 ANKRD33Q7Z3H0 272 aa13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 TBC1D5Q92609 795 aa13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 GUCD1Q96NT3 240 aa13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 UBA5Q9GZZ9 404 aa13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 STARD7Q9NQZ5 370 aa13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 ZSWIM5Q9P217 1185 aa13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 PRKAG2Q9UGJ0 569 aa13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 CCPG1Q9ULG6 757 aa13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 LRRC37A2A6NM11 1700 aa13.18□□□□□ -0.3
LIMCH1-214ENST00000512228 ZMYM6O95789 1325 aa13.17□□□□□ -0.3
LIMCH1-214ENST00000512228 B4E1Z4 1266 aa13.17□□□□□ -0.3
LIMCH1-214ENST00000512228 GSPT1P15170 499 aaKnown RBP13.17□□□□□ -0.3
LIMCH1-214ENST00000512228 ZNF543Q08ER8 600 aa13.17□□□□□ -0.3
LIMCH1-214ENST00000512228 AAMPQ13685 434 aa13.17□□□□□ -0.3
LIMCH1-214ENST00000512228 TKFCQ3LXA3 575 aa13.17□□□□□ -0.3
LIMCH1-214ENST00000512228 NSMFQ6X4W1 530 aa13.17□□□□□ -0.3
LIMCH1-214ENST00000512228 TICAM2Q86XR7 235 aa13.17□□□□□ -0.3
LIMCH1-214ENST00000512228 FBXO16Q8IX29 292 aaPredicted RBP13.17□□□□□ -0.3
LIMCH1-214ENST00000512228 TTC14Q96N46 770 aa13.17□□□□□ -0.3
LIMCH1-214ENST00000512228 DYNC1LI2O43237 492 aaPredicted RBP13.16□□□□□ -0.3
LIMCH1-214ENST00000512228 KDM4AO75164 1064 aa13.16□□□□□ -0.3
LIMCH1-214ENST00000512228 CXCL17Q6UXB2 119 aa13.16□□□□□ -0.3
LIMCH1-214ENST00000512228 SLC30A10Q6XR72 485 aa13.16□□□□□ -0.3
LIMCH1-214ENST00000512228 MORC4Q8TE76 937 aa13.16□□□□□ -0.3
LIMCH1-214ENST00000512228 PPP1R13LQ8WUF5 828 aa13.16□□□□□ -0.3
LIMCH1-214ENST00000512228 TOX2Q96NM4 488 aa13.16□□□□□ -0.3
LIMCH1-214ENST00000512228 TMEM39AQ9NV64 488 aa13.16□□□□□ -0.3
LIMCH1-214ENST00000512228 TBX21Q9UL17 535 aa13.16□□□□□ -0.3
LIMCH1-214ENST00000512228 TAF6LQ9Y6J9 622 aa13.16□□□□□ -0.3
LIMCH1-214ENST00000512228 LAMA4Q16363 1823 aa13.16□□□□□ -0.3
LIMCH1-214ENST00000512228 COL6A3P12111 3177 aa13.15□□□□□ -0.3
LIMCH1-214ENST00000512228 MOXD2PA6NHM9 499 aa13.15□□□□□ -0.3
LIMCH1-214ENST00000512228 ZNF213O14771 459 aa13.15□□□□□ -0.3
LIMCH1-214ENST00000512228 PSMC6P62333 389 aa13.15□□□□□ -0.3
LIMCH1-214ENST00000512228 FAM109BQ6ICB4 259 aaPredicted RBP13.15□□□□□ -0.3
LIMCH1-214ENST00000512228 NOL8Q76FK4 1167 aaKnown RBP13.15□□□□□ -0.3
LIMCH1-214ENST00000512228 NUP133Q8WUM0 1156 aa13.15□□□□□ -0.3
LIMCH1-214ENST00000512228 ANKS1AQ92625 1134 aa13.15□□□□□ -0.3
LIMCH1-214ENST00000512228 VTI1AQ96AJ9 217 aa13.15□□□□□ -0.3
LIMCH1-214ENST00000512228 TTYH1Q9H313 450 aaPredicted RBP13.15□□□□□ -0.3
LIMCH1-214ENST00000512228 ELP1O95163 1332 aa13.14□□□□□ -0.31
LIMCH1-214ENST00000512228 ASB14A6NK59 587 aa13.14□□□□□ -0.31
LIMCH1-214ENST00000512228 ARVCFO00192 962 aa13.14□□□□□ -0.31
LIMCH1-214ENST00000512228 TIMP1P01033 207 aa13.14□□□□□ -0.31
LIMCH1-214ENST00000512228 CD4P01730 458 aa13.14□□□□□ -0.31
LIMCH1-214ENST00000512228 RAG1P15918 1043 aa13.14□□□□□ -0.31
LIMCH1-214ENST00000512228 CALML3P27482 149 aa13.14□□□□□ -0.31
LIMCH1-214ENST00000512228 ALDH5A1P51649 535 aaPredicted RBP13.14□□□□□ -0.31
LIMCH1-214ENST00000512228 PTH1RQ03431 593 aa13.14□□□□□ -0.31
LIMCH1-214ENST00000512228 PPP4R3BQ5MIZ7 849 aa13.14□□□□□ -0.31
LIMCH1-214ENST00000512228 IQSEC1Q6DN90 963 aa13.14□□□□□ -0.31
LIMCH1-214ENST00000512228 DGKHQ86XP1 1220 aa13.14□□□□□ -0.31
LIMCH1-214ENST00000512228 FAM126BQ8IXS8 530 aa13.14□□□□□ -0.31
LIMCH1-214ENST00000512228 ENAHQ8N8S7 591 aaPredicted RBP13.14□□□□□ -0.31
LIMCH1-214ENST00000512228 SLC43A3Q8NBI5 491 aa13.14□□□□□ -0.31
LIMCH1-214ENST00000512228 PCSK9Q8NBP7 692 aaKnown RBP13.14□□□□□ -0.31
LIMCH1-214ENST00000512228 SLC17A8Q8NDX2 589 aa13.14□□□□□ -0.31
LIMCH1-214ENST00000512228 VWCEQ96DN2 955 aa13.14□□□□□ -0.31
LIMCH1-214ENST00000512228 SEMA6BQ9H3T3 888 aa13.14□□□□□ -0.31
LIMCH1-214ENST00000512228 UMODL1Q5DID0 1318 aa13.13□□□□□ -0.31
LIMCH1-214ENST00000512228 PTPDC1A2A3K4 754 aa13.13□□□□□ -0.31
LIMCH1-214ENST00000512228 GRXCR1A8MXD5 290 aa13.13□□□□□ -0.31
LIMCH1-214ENST00000512228 DCDC2CA8MYV0 355 aa13.13□□□□□ -0.31
LIMCH1-214ENST00000512228 ACRP10323 421 aa13.13□□□□□ -0.31
LIMCH1-214ENST00000512228 RPS6P62753 249 aaKnown RBP13.13□□□□□ -0.31
LIMCH1-214ENST00000512228 FSCN1Q16658 493 aaKnown RBP13.13□□□□□ -0.31
LIMCH1-214ENST00000512228 SLC35G1Q2M3R5 365 aa13.13□□□□□ -0.31
LIMCH1-214ENST00000512228 KIAA1211Q6ZU35 1233 aa13.13□□□□□ -0.31
LIMCH1-214ENST00000512228 CYB5R4Q7L1T6 521 aa13.13□□□□□ -0.31
LIMCH1-214ENST00000512228 TLK2Q86UE8 772 aa13.13□□□□□ -0.31
LIMCH1-214ENST00000512228 STAG2Q8N3U4 1231 aa13.13□□□□□ -0.31
LIMCH1-214ENST00000512228 COPS5Q92905 334 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms