RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 KRT16P08779 473 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 VDRP11473 427 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 KCNA2P16389 499 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 STX2P32856 288 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 KLC1Q07866 573 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 DCTN2Q13561 401 aaKnown RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 HSP90AA4PQ58FG1 418 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 TCHHL1Q5QJ38 904 aaPredicted RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 HS2ST1Q7LGA3 356 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 PASD1Q8IV76 773 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 DDHD1Q8NEL9 900 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 GTF3C6Q969F1 213 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 OTULINQ96BN8 352 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 NAF1Q96HR8 494 aaKnown RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 B3GALT6Q96L58 329 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 UBAC1Q9BSL1 405 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 BEGAINQ9BUH8 593 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 IFIH1Q9BYX4 1025 aaKnown RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 PIGUQ9H490 435 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 RPAP3Q9H6T3 665 aaPredicted RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 LIMA1Q9UHB6 759 aaKnown RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 DNAJC12Q9UKB3 198 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 STK38LQ9Y2H1 464 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 SOS2Q07890 1332 aaPredicted RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 KDM2BQ8NHM5 1336 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 RAB3GAP2Q9H2M9 1393 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 RIMS2Q9UQ26 1411 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 APBB1O00213 710 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 KPNA4O00629 521 aaPredicted RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 LIN7AO14910 233 aaPredicted RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 EIF3HO15372 352 aaKnown RBP eCLIP3.91□□□□□ -1.78
USP53-205ENST00000509769 AHCYL1O43865 530 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 MTRF1O75570 445 aaKnown RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 FCHSD2O94868 740 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 PYGLP06737 847 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 RPSAP08865 295 aaKnown RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 FOSL1P15407 271 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 U2AF2P26368 475 aaKnown RBP eCLIP3.91□□□□□ -1.783e-7■□□□□ 9.3
USP53-205ENST00000509769 SSFA2P28290 1259 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 TPP2P29144 1249 aaPredicted RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 USP5P45974 858 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 CARSP49589 748 aaKnown RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 NUP107P57740 925 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 AP2B1P63010 937 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 ARHGAP44Q17R89 818 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 RSBN1LQ6PCB5 846 aaPredicted RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 OGFOD1Q8N543 542 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 CCDC42Q96M95 316 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 TINF2Q9BSI4 451 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 UPF3AQ9H1J1 476 aaKnown RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 ATG3Q9NT62 314 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 AP4S1Q9Y587 144 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 GOLGA8JA6NMD2 632 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 N4BP3O15049 544 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 STX7O15400 261 aaKnown RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 RGS16O15492 202 aaPredicted RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 STX6O43752 255 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 CBFA2T3O75081 653 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 TSC22D2O75157 780 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 TNNC2P02585 160 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 GNAI2P04899 355 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 ZSCAN22P10073 491 aaPredicted RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 LIG3P49916 1009 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 SMTNP53814 917 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 BBS9Q3SYG4 887 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 FSCBQ5H9T9 825 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 TTLL7Q6ZT98 887 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 PARP9Q8IXQ6 854 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 CFAP61Q8NHU2 1237 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 GIPC2Q8TF65 315 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 UBLCP1Q8WVY7 318 aaPredicted RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 SSH1Q8WYL5 1049 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 MRPS27Q92552 414 aaKnown RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 DACT3Q96B18 629 aaPredicted RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 SH3KBP1Q96B97 665 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 SKA1Q96BD8 255 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 KLHL29Q96CT2 875 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 KIF1BPQ96EK5 621 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 CALML4Q96GE6 196 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 NOX5Q96PH1 765 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 CAMKK2Q96RR4 588 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 CLEC4MQ9H2X3 399 aaPredicted RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 PPCSQ9HAB8 311 aa3.91□□□□□ -1.78
USP53-205ENST00000509769 TRMT1Q9NXH9 659 aaKnown RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 MAP3K20Q9NYL2 800 aaKnown RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 CAB39Q9Y376 341 aaPredicted RBP3.91□□□□□ -1.78
USP53-205ENST00000509769 GPRASP1Q5JY77 1395 aa3.9□□□□□ -1.78
USP53-205ENST00000509769 WDR46O15213 610 aaKnown RBP3.9□□□□□ -1.78
USP53-205ENST00000509769 MAPK13O15264 365 aa3.9□□□□□ -1.78
USP53-205ENST00000509769 TPD52L2O43399 206 aaKnown RBP3.9□□□□□ -1.78
USP53-205ENST00000509769 TOM1L1O75674 476 aa3.9□□□□□ -1.78
USP53-205ENST00000509769 HSPA1AP0DMV8 641 aaKnown RBP3.9□□□□□ -1.78
USP53-205ENST00000509769 HSPA1BP0DMV9 641 aaKnown RBP3.9□□□□□ -1.78
USP53-205ENST00000509769 IL1RL1Q01638 556 aa3.9□□□□□ -1.78
USP53-205ENST00000509769 STRN3Q13033 797 aa3.9□□□□□ -1.78
USP53-205ENST00000509769 PPP2R5DQ14738 602 aa3.9□□□□□ -1.78
USP53-205ENST00000509769 DIXDC1Q155Q3 683 aa3.9□□□□□ -1.78
USP53-205ENST00000509769 USH1GQ495M9 461 aa3.9□□□□□ -1.78
USP53-205ENST00000509769 CCDC157Q569K6 752 aa3.9□□□□□ -1.78
USP53-205ENST00000509769 KANK4Q5T7N3 995 aaPredicted RBP3.9□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms