RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 REXO2Q9Y3B8 237 aaKnown RBP18.08■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 CCDC194A0A1B0GVG4 234 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 STXBP3O00186 592 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 TFRCP02786 760 aaKnown RBP18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 UBXN1Q04323 297 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 TUBB2AQ13885 445 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 GRIK5Q16478 980 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 INF2Q27J81 1249 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 KIF4BQ2VIQ3 1234 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 JAKMIP3Q5VZ66 844 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 ZNF507Q8TCN5 953 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 TUBB2BQ9BVA1 445 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 CCSER1Q9C0I3 900 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 TCP11L1Q9NUJ3 509 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 CTAGE9A4FU28 777 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 CCDC151A5D8V7 595 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 CYP2C19P33261 490 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 USP5P45974 858 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 NT5C2P49902 561 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 GNAQP50148 359 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 MB21D1Q8N884 522 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 SLF1Q9BQI6 1058 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 KBTBD4Q9NVX7 518 aa18.07■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 NAV1Q8NEY1 1877 aa18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 H0YIN7 160 aa18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 PDE6BP35913 854 aa18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 BRD3Q15059 726 aa18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 MSANTD4Q8NCY6 345 aa18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 FHDC1Q9C0D6 1143 aaPredicted RBP18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 BARHL2Q9NY43 387 aa18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 TTC26A0AVF1 554 aa18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 CCDC66A2RUB6 948 aa18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 PALM3A6NDB9 673 aaPredicted RBP18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 LGALS16A8MUM7 142 aa18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 POLR3GO15318 223 aaPredicted RBP18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 RHOBTB3O94955 611 aa18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 KCNA3P22001 575 aa18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 SMC1AQ14683 1233 aaKnown RBP18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 LONRF2Q1L5Z9 754 aa18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 SLC44A5Q8NCS7 719 aa18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 PLIN2Q99541 437 aa18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 NAPGQ99747 312 aaPredicted RBP18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 MYO1AQ9UBC5 1043 aa18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 RAB21Q9UL25 225 aa18.06■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 C10orf71Q711Q0 1435 aa18.05■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 MAP2K7O14733 419 aa18.05■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 GRAPQ13588 217 aa18.05■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 GALNT17Q6IS24 598 aa18.05■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 HEATR3Q7Z4Q2 680 aa18.05■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 GIMAP8Q8ND71 665 aaPredicted RBP18.05■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 GRAPLQ8TC17 118 aaPredicted RBP18.05■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 PNKPQ96T60 521 aa18.05■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 TMEM47Q9BQJ4 181 aa18.05■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 MKNK2Q9HBH9 465 aa18.05■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 ZCCHC17Q9NP64 241 aaKnown RBP18.05■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 CDK5RAP2Q96SN8 1893 aa18.05■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 FLT1P17948 1338 aa18.05■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 A0A1W2PQC6 194 aa18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 LDHBP07195 334 aaKnown RBP18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 OAS2P29728 719 aaKnown RBP18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 PRPHP41219 470 aa18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 AMPD2Q01433 879 aa18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 DIXDC1Q155Q3 683 aa18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 CCDC178Q5BJE1 867 aa18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 TTI2Q6NXR4 508 aa18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 CCDC148Q8NFR7 591 aa18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 HNRNPLLQ8WVV9 542 aaKnown RBP18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 RBM17Q96I25 401 aaKnown RBP18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 DNAJC7Q99615 494 aa18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 THAP9Q9H5L6 903 aa18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 EPN1Q9Y6I3 576 aaPredicted RBP18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 C21orf2O43822 256 aa18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 NDUFA10O95299 355 aa18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 MYL1P05976 194 aa18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 TSPY3P0CV98 308 aa18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 TSPY8P0CW00 308 aa18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 EEF1GP26641 437 aaKnown RBP18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 UBA7P41226 1012 aa18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 PPP4CP60510 307 aa18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 WDR66Q8TBY9 1149 aa18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 DUSP9Q99956 384 aaKnown RBP18.04■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 RASA1P20936 1047 aa18.03■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 BEND6Q5SZJ8 279 aaPredicted RBP18.03■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 WDR59Q6PJI9 974 aa18.03■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 OR8K1Q8NGG5 319 aa18.03■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 MASTLQ96GX5 879 aa18.03■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 ANKIB1Q9P2G1 1089 aa18.03■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 TRIM10Q9UDY6 481 aa18.03■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 KLRG2A4D1S0 409 aaPredicted RBP18.03■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 ERICH4A6NGS2 130 aa18.03■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 LAD1O00515 517 aa18.03■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 GOLGA8HP0CJ92 632 aa18.03■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 WHAMMP3Q1A5X7 153 aa18.03■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 TGFBRAP1Q8WUH2 860 aa18.03■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 CAPN11Q9UMQ6 739 aa18.03■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 MTMR7Q9Y216 660 aa18.03■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 PPEF1O14829 653 aaPredicted RBP18.02■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 NPR1P16066 1061 aa18.02■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 SEMA3FQ13275 785 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms