RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, human

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-210	ENST00000497815		K7ELQ4	463 aa	Predicted RBP	13.75	□□□□□ -0.21
CUX1-210	ENST00000497815	TNPO2	O14787	897 aa	Known RBP	13.75	□□□□□ -0.21
CUX1-210	ENST00000497815	PRPF3	O43395	683 aa	Known RBP	13.75	□□□□□ -0.21
CUX1-210	ENST00000497815	JAK2	O60674	1132 aa		13.75	□□□□□ -0.21
CUX1-210	ENST00000497815	CTGF	P29279	349 aa		13.75	□□□□□ -0.21
CUX1-210	ENST00000497815	MAPK4	P31152	587 aa		13.75	□□□□□ -0.21
CUX1-210	ENST00000497815	FCGRT	P55899	365 aa		13.75	□□□□□ -0.21
CUX1-210	ENST00000497815	MUM1L1	Q5H9M0	696 aa		13.75	□□□□□ -0.21
CUX1-210	ENST00000497815	NSUN7	Q8NE18	718 aa	Known RBP	13.75	□□□□□ -0.21
CUX1-210	ENST00000497815	SHCBP1	Q8NEM2	672 aa		13.75	□□□□□ -0.21
CUX1-210	ENST00000497815	TRIM47	Q96LD4	638 aa		13.75	□□□□□ -0.21
CUX1-210	ENST00000497815	MROH8	Q9H579	483 aa		13.75	□□□□□ -0.21
CUX1-210	ENST00000497815	ABCB11	O95342	1321 aa		13.74	□□□□□ -0.21
CUX1-210	ENST00000497815	NFIB	O00712	420 aa		13.74	□□□□□ -0.21
CUX1-210	ENST00000497815	SCG2	P13521	617 aa		13.74	□□□□□ -0.21
CUX1-210	ENST00000497815	COPB2	P35606	906 aa		13.74	□□□□□ -0.21
CUX1-210	ENST00000497815	CAP1	Q01518	475 aa		13.74	□□□□□ -0.21
CUX1-210	ENST00000497815	PFKFB3	Q16875	520 aa	Predicted RBP	13.74	□□□□□ -0.21
CUX1-210	ENST00000497815	TKFC	Q3LXA3	575 aa		13.74	□□□□□ -0.21
CUX1-210	ENST00000497815	NOM1	Q5C9Z4	860 aa	Known RBP	13.74	□□□□□ -0.21
CUX1-210	ENST00000497815	WWC2	Q6AWC2	1192 aa		13.74	□□□□□ -0.21
CUX1-210	ENST00000497815	GPR142	Q7Z601	462 aa		13.74	□□□□□ -0.21
CUX1-210	ENST00000497815	PLEKHH3	Q7Z736	793 aa		13.74	□□□□□ -0.21
CUX1-210	ENST00000497815	SNX21	Q969T3	373 aa		13.74	□□□□□ -0.21
CUX1-210	ENST00000497815	ERO1A	Q96HE7	468 aa		13.74	□□□□□ -0.21
CUX1-210	ENST00000497815	MMP19	Q99542	508 aa		13.74	□□□□□ -0.21
CUX1-210	ENST00000497815	ACAD9	Q9H845	621 aa		13.74	□□□□□ -0.21
CUX1-210	ENST00000497815	RBM27	Q9P2N5	1060 aa	Known RBP	13.74	□□□□□ -0.21
CUX1-210	ENST00000497815	ORC3	Q9UBD5	711 aa	Predicted RBP	13.74	□□□□□ -0.21
CUX1-210	ENST00000497815	PNMA2	Q9UL42	364 aa		13.74	□□□□□ -0.21
CUX1-210	ENST00000497815	IVNS1ABP	Q9Y6Y0	642 aa		13.74	□□□□□ -0.21
CUX1-210	ENST00000497815	ZSWIM8	A7E2V4	1837 aa		13.74	□□□□□ -0.21
CUX1-210	ENST00000497815	DEXI	O95424	95 aa		13.73	□□□□□ -0.21
CUX1-210	ENST00000497815	FOSB	P53539	338 aa		13.73	□□□□□ -0.21
CUX1-210	ENST00000497815	NAPA	P54920	295 aa		13.73	□□□□□ -0.21
CUX1-210	ENST00000497815	KCTD2	Q14681	263 aa		13.73	□□□□□ -0.21
CUX1-210	ENST00000497815	PKN1	Q16512	942 aa		13.73	□□□□□ -0.21
CUX1-210	ENST00000497815	NSMF	Q6X4W1	530 aa		13.73	□□□□□ -0.21
CUX1-210	ENST00000497815	ANKRD35	Q8N283	1001 aa		13.73	□□□□□ -0.21
CUX1-210	ENST00000497815	CHST13	Q8NET6	341 aa		13.73	□□□□□ -0.21
CUX1-210	ENST00000497815	CLEC4D	Q8WXI8	215 aa		13.73	□□□□□ -0.21
CUX1-210	ENST00000497815	AIFM3	Q96NN9	605 aa		13.73	□□□□□ -0.21
CUX1-210	ENST00000497815	FOXD4L1	Q9NU39	408 aa		13.73	□□□□□ -0.21
CUX1-210	ENST00000497815	FBXO40	Q9UH90	709 aa		13.73	□□□□□ -0.21
CUX1-210	ENST00000497815	MRPL11	Q9Y3B7	192 aa	Known RBP	13.73	□□□□□ -0.21
CUX1-210	ENST00000497815	STK36	Q9NRP7	1315 aa		13.72	□□□□□ -0.21
CUX1-210	ENST00000497815	STXBP3	O00186	592 aa		13.72	□□□□□ -0.21
CUX1-210	ENST00000497815	PGK2	P07205	417 aa		13.72	□□□□□ -0.21
CUX1-210	ENST00000497815	FCER1A	P12319	257 aa		13.72	□□□□□ -0.21
CUX1-210	ENST00000497815	FDPS	P14324	419 aa	Known RBP	13.72	□□□□□ -0.21
CUX1-210	ENST00000497815	PTPRE	P23469	700 aa		13.72	□□□□□ -0.21
CUX1-210	ENST00000497815	TRAF1	Q13077	416 aa		13.72	□□□□□ -0.21
CUX1-210	ENST00000497815	LLPH	Q9BRT6	129 aa	Known RBP	13.72	□□□□□ -0.21
CUX1-210	ENST00000497815	VPS54	Q9P1Q0	977 aa		13.72	□□□□□ -0.21
CUX1-210	ENST00000497815	PCNT	O95613	3336 aa		13.72	□□□□□ -0.21
CUX1-210	ENST00000497815	CFB	P00751	764 aa		13.71	□□□□□ -0.21
CUX1-210	ENST00000497815	CALML3	P27482	149 aa		13.71	□□□□□ -0.21
CUX1-210	ENST00000497815	TYW1B	Q6NUM6	668 aa		13.71	□□□□□ -0.21
CUX1-210	ENST00000497815	SLC30A10	Q6XR72	485 aa		13.71	□□□□□ -0.21
CUX1-210	ENST00000497815	RNF207	Q6ZRF8	634 aa		13.71	□□□□□ -0.21
CUX1-210	ENST00000497815	SMARCC2	Q8TAQ2	1214 aa		13.71	□□□□□ -0.21
CUX1-210	ENST00000497815	TBC1D5	Q92609	795 aa		13.71	□□□□□ -0.21
CUX1-210	ENST00000497815	ALG1	Q9BT22	464 aa		13.71	□□□□□ -0.21
CUX1-210	ENST00000497815	A1CF	Q9NQ94	594 aa	Known RBP	13.71	□□□□□ -0.21
CUX1-210	ENST00000497815	BARHL2	Q9NY43	387 aa		13.71	□□□□□ -0.21
CUX1-210	ENST00000497815	GABRQ	Q9UN88	632 aa		13.71	□□□□□ -0.21
CUX1-210	ENST00000497815	TRIM17	Q9Y577	477 aa		13.71	□□□□□ -0.21
CUX1-210	ENST00000497815	SLC15A5	A6NIM6	579 aa		13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	hCG_1984214	I3L0E3	225 aa		13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	OPLAH	O14841	1288 aa		13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	STRN	O43815	780 aa		13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	ADORA2A	P29274	412 aa		13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	HOXA13	P31271	388 aa	Predicted RBP	13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	PRKCZ	Q05513	592 aa		13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	CUL4A	Q13619	759 aa		13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	BAAT	Q14032	418 aa	Predicted RBP	13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	ARHGEF6	Q15052	776 aa		13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	POTEH	Q6S545	545 aa		13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	DPP9	Q86TI2	863 aa		13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	MCF2L2	Q86YR7	1114 aa		13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	ZNF713	Q8N859	430 aa	Predicted RBP	13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	FAM184A	Q8NB25	1140 aa		13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	SPRYD3	Q8NCJ5	442 aa		13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	WASF1	Q92558	559 aa		13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	NUDT12	Q9BQG2	462 aa		13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	GJB4	Q9NTQ9	266 aa		13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	SMC3	Q9UQE7	1217 aa		13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	BAZ2B	Q9UIF8	2168 aa	Known RBP	13.7	□□□□□ -0.22
CUX1-210	ENST00000497815	SMCO2	A6NFE2	343 aa		13.69	□□□□□ -0.22
CUX1-210	ENST00000497815	HSP90AA1	P07900	732 aa	Known RBP	13.69	□□□□□ -0.22
CUX1-210	ENST00000497815	CYP2B6	P20813	491 aa		13.69	□□□□□ -0.22
CUX1-210	ENST00000497815	HOXD10	P28358	340 aa		13.69	□□□□□ -0.22
CUX1-210	ENST00000497815	GJB2	P29033	226 aa		13.69	□□□□□ -0.22
CUX1-210	ENST00000497815	FLT3LG	P49771	235 aa		13.69	□□□□□ -0.22
CUX1-210	ENST00000497815	RPS6	P62753	249 aa	Known RBP	13.69	□□□□□ -0.22
CUX1-210	ENST00000497815	HMGN5	P82970	282 aa	Known RBP	13.69	□□□□□ -0.22
CUX1-210	ENST00000497815	GRB14	Q14449	540 aa		13.69	□□□□□ -0.22
CUX1-210	ENST00000497815	MORN1	Q5T089	497 aa		13.69	□□□□□ -0.22
CUX1-210	ENST00000497815	PPP1R18	Q6NYC8	613 aa		13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms