RNA–Protein interactions for RNA: ENST00000497139.5

VEGFA-215, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 2,746 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-215ENST00000497139 A0A087X0B3 334 aa14.4□□□□□ -0.1
VEGFA-215ENST00000497139 FRMD3A2A2Y4 597 aa14.4□□□□□ -0.1
VEGFA-215ENST00000497139 GRID2IPA4D2P6 1211 aa14.4□□□□□ -0.1
VEGFA-215ENST00000497139 TRIM75PA6NK02 468 aa14.4□□□□□ -0.1
VEGFA-215ENST00000497139 PPP1R12BO60237 982 aaPredicted RBP14.4□□□□□ -0.1
VEGFA-215ENST00000497139 RPSAP08865 295 aaKnown RBP14.4□□□□□ -0.1
VEGFA-215ENST00000497139 KCNA6P17658 529 aa14.4□□□□□ -0.1
VEGFA-215ENST00000497139 USP49Q70CQ1 688 aa14.4□□□□□ -0.1
VEGFA-215ENST00000497139 ATG9AQ7Z3C6 839 aa14.4□□□□□ -0.1
VEGFA-215ENST00000497139 MICU3Q86XE3 530 aa14.4□□□□□ -0.1
VEGFA-215ENST00000497139 ACSBG1Q96GR2 724 aa14.4□□□□□ -0.1
VEGFA-215ENST00000497139 SLC39A2Q9NP94 309 aa14.4□□□□□ -0.1
VEGFA-215ENST00000497139 NOP53Q9NZM5 478 aaKnown RBP14.4□□□□□ -0.1
VEGFA-215ENST00000497139 AHCYL1O43865 530 aa14.39□□□□□ -0.11
VEGFA-215ENST00000497139 LUC7L3O95232 432 aaKnown RBP14.39□□□□□ -0.11
VEGFA-215ENST00000497139 LCA5LO95447 670 aa14.39□□□□□ -0.11
VEGFA-215ENST00000497139 MIS18BP1Q6P0N0 1132 aa14.39□□□□□ -0.11
VEGFA-215ENST00000497139 NFU1Q9UMS0 254 aa14.39□□□□□ -0.11
VEGFA-215ENST00000497139 DEXIO95424 95 aa14.39□□□□□ -0.11
VEGFA-215ENST00000497139 A1BGP04217 495 aa14.39□□□□□ -0.11
VEGFA-215ENST00000497139 FESP07332 822 aa14.39□□□□□ -0.11
VEGFA-215ENST00000497139 HNRNPH3P31942 346 aaKnown RBP14.39□□□□□ -0.11
VEGFA-215ENST00000497139 RCAN1P53805 252 aa14.39□□□□□ -0.11
VEGFA-215ENST00000497139 IGDCC4Q8TDY8 1250 aa14.39□□□□□ -0.11
VEGFA-215ENST00000497139 RBM33Q96EV2 1170 aaKnown RBP14.39□□□□□ -0.11
VEGFA-215ENST00000497139 TAF1DQ9H5J8 278 aaPredicted RBP14.39□□□□□ -0.11
VEGFA-215ENST00000497139 LRP6O75581 1613 aa14.39□□□□□ -0.11
VEGFA-215ENST00000497139 PHRF1Q9P1Y6 1649 aaKnown RBP14.39□□□□□ -0.11
VEGFA-215ENST00000497139 ATRNO75882 1429 aa14.38□□□□□ -0.11
VEGFA-215ENST00000497139 BYSLQ13895 437 aaKnown RBP14.38□□□□□ -0.11
VEGFA-215ENST00000497139 CCDC96Q2M329 555 aa14.38□□□□□ -0.11
VEGFA-215ENST00000497139 NFXL1Q6ZNB6 911 aa14.38□□□□□ -0.11
VEGFA-215ENST00000497139 CYB5R4Q7L1T6 521 aa14.38□□□□□ -0.11
VEGFA-215ENST00000497139 NBPF5PQ86XG9 351 aaPredicted RBP14.38□□□□□ -0.11
VEGFA-215ENST00000497139 SYMPKQ92797 1274 aaKnown RBP14.38□□□□□ -0.11
VEGFA-215ENST00000497139 CENPTQ96BT3 561 aa14.38□□□□□ -0.11
VEGFA-215ENST00000497139 CNOT10Q9H9A5 744 aaKnown RBP14.38□□□□□ -0.11
VEGFA-215ENST00000497139 LY9Q9HBG7 655 aa14.38□□□□□ -0.11
VEGFA-215ENST00000497139 TFR2Q9UP52 801 aa14.38□□□□□ -0.11
VEGFA-215ENST00000497139 PLAAQ9Y263 795 aa14.38□□□□□ -0.11
VEGFA-215ENST00000497139 H7C1W4 665 aa14.38□□□□□ -0.11
VEGFA-215ENST00000497139 HEXIM1O94992 359 aaKnown RBP14.38□□□□□ -0.11
VEGFA-215ENST00000497139 ALADP13716 330 aa14.38□□□□□ -0.11
VEGFA-215ENST00000497139 CARSP49589 748 aaKnown RBP14.38□□□□□ -0.11
VEGFA-215ENST00000497139 PPARAQ07869 468 aa14.38□□□□□ -0.11
VEGFA-215ENST00000497139 MKRN4PQ13434 485 aaPredicted RBP14.38□□□□□ -0.11
VEGFA-215ENST00000497139 ACCSLQ4AC99 568 aa14.38□□□□□ -0.11
VEGFA-215ENST00000497139 C1orf141Q5JVX7 400 aa14.38□□□□□ -0.11
VEGFA-215ENST00000497139 MAATS1Q7Z4T9 603 aa14.38□□□□□ -0.11
VEGFA-215ENST00000497139 LRRC45Q96CN5 670 aa14.38□□□□□ -0.11
VEGFA-215ENST00000497139 CCDC42Q96M95 316 aa14.38□□□□□ -0.11
VEGFA-215ENST00000497139 RBM12Q9NTZ6 932 aaKnown RBP14.38□□□□□ -0.11
VEGFA-215ENST00000497139 PJA2O43164 708 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 ORC4O43929 436 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 CIAO1O76071 339 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 IBSPP21815 317 aaPredicted RBP14.37□□□□□ -0.11
VEGFA-215ENST00000497139 PPP2R2AP63151 447 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 MYO1EQ12965 1108 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 SPRED3Q2MJR0 410 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 IRF2BP1Q8IU81 584 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 USHBP1Q8N6Y0 703 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 ANKS4BQ8N8V4 417 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 IP6K1Q92551 441 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 CNKSR1Q969H4 720 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 LTV1Q96GA3 475 aaPredicted RBP14.37□□□□□ -0.11
VEGFA-215ENST00000497139 CALR3Q96L12 384 aaKnown RBP14.37□□□□□ -0.11
VEGFA-215ENST00000497139 IFIH1Q9BYX4 1025 aaKnown RBP14.37□□□□□ -0.11
VEGFA-215ENST00000497139 EPB41L5Q9HCM4 733 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 EXOC1Q9NV70 894 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 MAGEC2Q9UBF1 373 aaPredicted RBP14.37□□□□□ -0.11
VEGFA-215ENST00000497139 BAIAP2L1Q9UHR4 511 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 SLC12A4Q9UP95 1085 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 CAPN6Q9Y6Q1 641 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 PXDNQ92626 1479 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 CCT8L1PA6NM43 557 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 GLI1P08151 1106 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 FAM153BP0C7A2 387 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 TRIM21P19474 475 aaKnown RBP14.37□□□□□ -0.11
VEGFA-215ENST00000497139 CASP7P55210 303 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 CTDSPL2Q05D32 466 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 ITIH4Q14624 930 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 KCNB1Q14721 858 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 FAM153CQ494X1 144 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 CCDC38Q502W7 563 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 RNF10Q8N5U6 811 aaKnown RBP14.37□□□□□ -0.11
VEGFA-215ENST00000497139 STAMBPL1Q96FJ0 436 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 EPSTI1Q96J88 318 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 L3MBTL3Q96JM7 780 aaPredicted RBP14.37□□□□□ -0.11
VEGFA-215ENST00000497139 SENP2Q9HC62 589 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 LRWD1Q9UFC0 647 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 FAM153AQ9UHL3 310 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 SLC12A7Q9Y666 1083 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 DUSP10Q9Y6W6 482 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 XDHP47989 1333 aa14.37□□□□□ -0.11
VEGFA-215ENST00000497139 ARFGEF2Q9Y6D5 1785 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 OPLAHO14841 1288 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 GPAA1O43292 621 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 TRIM37O94972 964 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 ANP32DO95626 131 aa14.36□□□□□ -0.11
VEGFA-215ENST00000497139 MATR3P43243 847 aaKnown RBP eCLIP14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms