RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 B4DLN1 442 aa19.03■□□□□ 0.64
SF3A1-209ENST00000496189 SEPT4O43236 478 aa19.03■□□□□ 0.64
SF3A1-209ENST00000496189 PSMA5P28066 241 aa19.03■□□□□ 0.64
SF3A1-209ENST00000496189 GNAQP50148 359 aa19.03■□□□□ 0.64
SF3A1-209ENST00000496189 MRPL12P52815 198 aaKnown RBP19.03■□□□□ 0.64
SF3A1-209ENST00000496189 MUM1L1Q5H9M0 696 aa19.03■□□□□ 0.64
SF3A1-209ENST00000496189 DHX32Q7L7V1 743 aaKnown RBP19.03■□□□□ 0.64
SF3A1-209ENST00000496189 FBXO11Q86XK2 927 aa19.03■□□□□ 0.64
SF3A1-209ENST00000496189 USP26Q9BXU7 913 aa19.03■□□□□ 0.64
SF3A1-209ENST00000496189 MAF1Q9H063 256 aa19.03■□□□□ 0.64
SF3A1-209ENST00000496189 CRISPLD2Q9H0B8 497 aa19.03■□□□□ 0.64
SF3A1-209ENST00000496189 CPVLQ9H3G5 476 aa19.03■□□□□ 0.64
SF3A1-209ENST00000496189 CYP39A1Q9NYL5 469 aa19.03■□□□□ 0.64
SF3A1-209ENST00000496189 PALM3A6NDB9 673 aaPredicted RBP19.02■□□□□ 0.64
SF3A1-209ENST00000496189 TROAPQ12815 778 aa19.02■□□□□ 0.64
SF3A1-209ENST00000496189 QRICH1Q2TAL8 776 aa19.02■□□□□ 0.64
SF3A1-209ENST00000496189 RNF207Q6ZRF8 634 aa19.02■□□□□ 0.64
SF3A1-209ENST00000496189 NECAB2Q7Z6G3 386 aa19.02■□□□□ 0.64
SF3A1-209ENST00000496189 MCF2L2Q86YR7 1114 aa19.02■□□□□ 0.64
SF3A1-209ENST00000496189 STAG2Q8N3U4 1231 aa19.02■□□□□ 0.64
SF3A1-209ENST00000496189 LZTS2Q9BRK4 669 aa19.02■□□□□ 0.64
SF3A1-209ENST00000496189 AMNQ9BXJ7 453 aa19.02■□□□□ 0.64
SF3A1-209ENST00000496189 JMJD4Q9H9V9 463 aa19.02■□□□□ 0.64
SF3A1-209ENST00000496189 OGDHLQ9ULD0 1010 aa19.02■□□□□ 0.64
SF3A1-209ENST00000496189 MRPL11Q9Y3B7 192 aaKnown RBP19.02■□□□□ 0.64
SF3A1-209ENST00000496189 ZBTB5O15062 677 aa19.01■□□□□ 0.63
SF3A1-209ENST00000496189 AKR1A1P14550 325 aa19.01■□□□□ 0.63
SF3A1-209ENST00000496189 BLOC1S2Q6QNY1 142 aa19.01■□□□□ 0.63
SF3A1-209ENST00000496189 MAMDC4Q6UXC1 1216 aa19.01■□□□□ 0.63
SF3A1-209ENST00000496189 HOMER1Q86YM7 354 aa19.01■□□□□ 0.63
SF3A1-209ENST00000496189 KCNB2Q92953 911 aa19.01■□□□□ 0.63
SF3A1-209ENST00000496189 JAKMIP1Q96N16 626 aaKnown RBP19.01■□□□□ 0.63
SF3A1-209ENST00000496189 SENP2Q9HC62 589 aa19.01■□□□□ 0.63
SF3A1-209ENST00000496189 ZHX1Q9UKY1 873 aaPredicted RBP19.01■□□□□ 0.63
SF3A1-209ENST00000496189 NFIBO00712 420 aa19■□□□□ 0.63
SF3A1-209ENST00000496189 RARBP10826 455 aa19■□□□□ 0.63
SF3A1-209ENST00000496189 CALML3P27482 149 aa19■□□□□ 0.63
SF3A1-209ENST00000496189 CNTN2Q02246 1040 aa19■□□□□ 0.63
SF3A1-209ENST00000496189 RASEFQ8IZ41 740 aa19■□□□□ 0.63
SF3A1-209ENST00000496189 FAM133AQ8N9E0 248 aa19■□□□□ 0.63
SF3A1-209ENST00000496189 ARRDC4Q8NCT1 418 aa19■□□□□ 0.63
SF3A1-209ENST00000496189 LRRC2Q9BYS8 371 aa19■□□□□ 0.63
SF3A1-209ENST00000496189 ABHD16BQ9H3Z7 469 aa19■□□□□ 0.63
SF3A1-209ENST00000496189 SEC63Q9UGP8 760 aaKnown RBP19■□□□□ 0.63
SF3A1-209ENST00000496189 LOC102724159A0A0B4J2E5 919 aa18.99■□□□□ 0.63
SF3A1-209ENST00000496189 KBTBD13C9JR72 458 aa18.99■□□□□ 0.63
SF3A1-209ENST00000496189 IGHA2P01877 340 aa18.99■□□□□ 0.63
SF3A1-209ENST00000496189 BAATQ14032 418 aaPredicted RBP18.99■□□□□ 0.63
SF3A1-209ENST00000496189 PWP2Q15269 919 aaKnown RBP18.99■□□□□ 0.63
SF3A1-209ENST00000496189 ADCK5Q3MIX3 580 aa18.99■□□□□ 0.63
SF3A1-209ENST00000496189 PRAMEF19Q5SWL8 479 aa18.99■□□□□ 0.63
SF3A1-209ENST00000496189 LHX8Q68G74 356 aa18.99■□□□□ 0.63
SF3A1-209ENST00000496189 ARMCX2Q7L311 632 aa18.99■□□□□ 0.63
SF3A1-209ENST00000496189 SGMS1Q86VZ5 419 aa18.99■□□□□ 0.63
SF3A1-209ENST00000496189 RGS22Q8NE09 1264 aa18.99■□□□□ 0.63
SF3A1-209ENST00000496189 TRPV1Q8NER1 839 aa18.99■□□□□ 0.63
SF3A1-209ENST00000496189 RRP36Q96EU6 259 aaKnown RBP18.99■□□□□ 0.63
SF3A1-209ENST00000496189 MYL10Q9BUA6 226 aa18.99■□□□□ 0.63
SF3A1-209ENST00000496189 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.99■□□□□ 0.63
SF3A1-209ENST00000496189 FAM184BQ9ULE4 1060 aa18.99■□□□□ 0.63
SF3A1-209ENST00000496189 SNX14Q9Y5W7 946 aa18.99■□□□□ 0.63
SF3A1-209ENST00000496189 MYCNP04198 464 aaPredicted RBP18.98■□□□□ 0.63
SF3A1-209ENST00000496189 ACVR2BQ13705 512 aa18.98■□□□□ 0.63
SF3A1-209ENST00000496189 MICU3Q86XE3 530 aa18.98■□□□□ 0.63
SF3A1-209ENST00000496189 CCDC144CPQ8IYA2 1237 aa18.98■□□□□ 0.63
SF3A1-209ENST00000496189 DPF3Q92784 378 aa18.98■□□□□ 0.63
SF3A1-209ENST00000496189 PAWRQ96IZ0 340 aaKnown RBP18.98■□□□□ 0.63
SF3A1-209ENST00000496189 RIOX1Q9H6W3 641 aa18.98■□□□□ 0.63
SF3A1-209ENST00000496189 SPC25Q9HBM1 224 aa18.98■□□□□ 0.63
SF3A1-209ENST00000496189 GPHNQ9NQX3 736 aaPredicted RBP18.98■□□□□ 0.63
SF3A1-209ENST00000496189 NAP1L2Q9ULW6 460 aaPredicted RBP18.98■□□□□ 0.63
SF3A1-209ENST00000496189 PCDHA1Q9Y5I3 950 aa18.98■□□□□ 0.63
SF3A1-209ENST00000496189 PNMA6FA0A0J9YX94 578 aa18.97■□□□□ 0.63
SF3A1-209ENST00000496189 TAL1P17542 331 aaPredicted RBP18.97■□□□□ 0.63
SF3A1-209ENST00000496189 SMARCA1P28370 1054 aa18.97■□□□□ 0.63
SF3A1-209ENST00000496189 EXOSC10Q01780 885 aaKnown RBP18.97■□□□□ 0.63
SF3A1-209ENST00000496189 DNERQ8NFT8 737 aa18.97■□□□□ 0.63
SF3A1-209ENST00000496189 CLEC4DQ8WXI8 215 aa18.97■□□□□ 0.63
SF3A1-209ENST00000496189 PIGSQ96S52 555 aa18.97■□□□□ 0.63
SF3A1-209ENST00000496189 SPZ1Q9BXG8 430 aa18.97■□□□□ 0.63
SF3A1-209ENST00000496189 C11orf49Q9H6J7 331 aa18.97■□□□□ 0.63
SF3A1-209ENST00000496189 XPNPEP3Q9NQH7 507 aa18.97■□□□□ 0.63
SF3A1-209ENST00000496189 RBM28Q9NW13 759 aaKnown RBP18.97■□□□□ 0.63
SF3A1-209ENST00000496189 MYH6P13533 1939 aa18.97■□□□□ 0.63
SF3A1-209ENST00000496189 ZBTB43O43298 467 aa18.96■□□□□ 0.63
SF3A1-209ENST00000496189 SNAI1O95863 264 aaPredicted RBP18.96■□□□□ 0.63
SF3A1-209ENST00000496189 CASTP20810 708 aaKnown RBP18.96■□□□□ 0.63
SF3A1-209ENST00000496189 RPS6P62753 249 aaKnown RBP18.96■□□□□ 0.63
SF3A1-209ENST00000496189 C8orf34Q49A92 452 aa18.96■□□□□ 0.63
SF3A1-209ENST00000496189 SLC30A10Q6XR72 485 aa18.96■□□□□ 0.63
SF3A1-209ENST00000496189 RNF180Q86T96 592 aa18.96■□□□□ 0.63
SF3A1-209ENST00000496189 SAMD3Q8N6K7 520 aa18.96■□□□□ 0.63
SF3A1-209ENST00000496189 FANCBQ8NB91 859 aa18.96■□□□□ 0.63
SF3A1-209ENST00000496189 MTMR8Q96EF0 704 aa18.96■□□□□ 0.63
SF3A1-209ENST00000496189 TCEANC2Q96MN5 208 aa18.96■□□□□ 0.63
SF3A1-209ENST00000496189 MAP3K20Q9NYL2 800 aaKnown RBP18.96■□□□□ 0.63
SF3A1-209ENST00000496189 BRCA2P51587 3418 aa18.95■□□□□ 0.62
SF3A1-209ENST00000496189 KLF18A0A0U1RQI7 1052 aa18.95■□□□□ 0.62
SF3A1-209ENST00000496189 SOWAHBA6NEL2 793 aa18.95■□□□□ 0.62
SF3A1-209ENST00000496189 DNM1LO00429 736 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms