RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 PHKA1P46020 1223 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 TDO2P48775 406 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 ACTN3Q08043 901 aaPredicted RBP10.78□□□□□ -0.68
SYNE1-230ENST00000495090 NEDD9Q14511 834 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 PREPLQ4J6C6 727 aaPredicted RBP10.78□□□□□ -0.68
SYNE1-230ENST00000495090 KRT28Q7Z3Y7 464 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 IFT20Q8IY31 132 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 CMTR1Q8N1G2 835 aaKnown RBP10.78□□□□□ -0.68
SYNE1-230ENST00000495090 EIF1ADQ8N9N8 165 aaKnown RBP10.78□□□□□ -0.68
SYNE1-230ENST00000495090 GIMAP8Q8ND71 665 aaPredicted RBP10.78□□□□□ -0.68
SYNE1-230ENST00000495090 MAGEC3Q8TD91 643 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 LPIN2Q92539 896 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 ESR2Q92731 530 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 STAMQ92783 540 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 TRIM47Q96LD4 638 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 CCDC42Q96M95 316 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 ORAI2Q96SN7 254 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 TUBGCP2Q9BSJ2 902 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 ACTR5Q9H9F9 607 aaPredicted RBP10.78□□□□□ -0.68
SYNE1-230ENST00000495090 AGPAT5Q9NUQ2 364 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 TFR2Q9UP52 801 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 PLAGL2Q9UPG8 496 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 DLEC1Q9Y238 1755 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 TNKSO95271 1327 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 SPATA31A3Q5VYP0 1347 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 BICDL2A1A5D9 508 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 HMGB1P1B2RPK0 211 aaPredicted RBP10.77□□□□□ -0.69
SYNE1-230ENST00000495090 B4DLN1 442 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 PJA2O43164 708 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 RASSF9O75901 435 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 FGFR2P21802 821 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 ITGA6P23229 1130 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 PAK2Q13177 524 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 PUM3Q15397 648 aaKnown RBP10.77□□□□□ -0.69
SYNE1-230ENST00000495090 EZH2Q15910 746 aaKnown RBP10.77□□□□□ -0.69
SYNE1-230ENST00000495090 PTGISQ16647 500 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 RRP12Q5JTH9 1297 aaKnown RBP10.77□□□□□ -0.69
SYNE1-230ENST00000495090 CCDC181Q5TID7 509 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 C8orf74Q6P047 294 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 TAX1BP1Q86VP1 789 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 CCDC50Q8IVM0 306 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 MAGEB6Q8N7X4 407 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 SPATA5Q8NB90 893 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 ZNF473Q8WTR7 871 aaKnown RBP10.77□□□□□ -0.69
SYNE1-230ENST00000495090 ZKSCAN3Q9BRR0 538 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 IFIH1Q9BYX4 1025 aaKnown RBP10.77□□□□□ -0.69
SYNE1-230ENST00000495090 ARMT1Q9H993 441 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 MAGEF1Q9HAY2 307 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 DISC1Q9NRI5 854 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 CNNM1Q9NRU3 951 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 CAPN6Q9Y6Q1 641 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 DUSP10Q9Y6W6 482 aa10.77□□□□□ -0.69
SYNE1-230ENST00000495090 TRIM49BA6NDI0 452 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 MYO1FO00160 1098 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 ZNF263O14978 683 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 DDAH1O94760 285 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 FAM107AO95990 144 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 PCP11498 1178 aaKnown RBP10.76□□□□□ -0.69
SYNE1-230ENST00000495090 NR1D1P20393 614 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 RDXP35241 583 aaKnown RBP10.76□□□□□ -0.69
SYNE1-230ENST00000495090 STAT6P42226 847 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 PMS1P54277 932 aaKnown RBP10.76□□□□□ -0.69
SYNE1-230ENST00000495090 TBC1D8BQ0IIM8 1120 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 IL17AQ16552 155 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 CCDC96Q2M329 555 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 COBLL1Q53SF7 1204 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 CFAP58Q5T655 872 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 WLSQ5T9L3 541 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 PPP4R3AQ6IN85 833 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 LMOD2Q6P5Q4 547 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 C6orf89Q6UWU4 347 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 CATIPQ7Z7H3 387 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 WHAMMQ8TF30 809 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 ZKSCAN4Q969J2 545 aaPredicted RBP10.76□□□□□ -0.69
SYNE1-230ENST00000495090 RNPC3Q96LT9 517 aaKnown RBP10.76□□□□□ -0.69
SYNE1-230ENST00000495090 CUEDC2Q9H467 287 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 LRWD1Q9UFC0 647 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 MCM8Q9UJA3 840 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 PCDHA13Q9Y5I0 950 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 MROH5Q6ZUA9 1318 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 MYH3P11055 1940 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 KLRC4O43908 158 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 MDH1P40925 334 aaKnown RBP10.76□□□□□ -0.69
SYNE1-230ENST00000495090 CTSWP56202 376 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 ZC3H6P61129 1189 aaKnown RBP10.76□□□□□ -0.69
SYNE1-230ENST00000495090 PPARAQ07869 468 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 TMED8Q6PL24 325 aaPredicted RBP10.76□□□□□ -0.69
SYNE1-230ENST00000495090 ARHGAP27Q6ZUM4 889 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 TMTC3Q6ZXV5 915 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 RNF10Q8N5U6 811 aaKnown RBP10.76□□□□□ -0.69
SYNE1-230ENST00000495090 ARFGAP2Q8N6H7 521 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 MYCBPAPQ8TBZ2 947 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 FAM89AQ96GI7 184 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 ATP6V1G3Q96LB4 118 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 DUSP9Q99956 384 aaKnown RBP10.76□□□□□ -0.69
SYNE1-230ENST00000495090 KLC4Q9NSK0 619 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 SLC4A4Q9Y6R1 1079 aa10.76□□□□□ -0.69
SYNE1-230ENST00000495090 ABCB11O95342 1321 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 CNTNAP5Q8WYK1 1306 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 PCDH11XQ9BZA7 1347 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms