RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 PMF1-BGLAPU3KQ54 211 aa7.29□□□□□ -1.24
VPS50-219ENST00000495039 K7ESM1 405 aa7.28□□□□□ -1.24
VPS50-219ENST00000495039 SHOXO15266 292 aa7.28□□□□□ -1.24
VPS50-219ENST00000495039 ERCC3P19447 782 aa7.28□□□□□ -1.24
VPS50-219ENST00000495039 CORO7P57737 925 aa7.28□□□□□ -1.24
VPS50-219ENST00000495039 NT5DC1Q5TFE4 455 aa7.28□□□□□ -1.24
VPS50-219ENST00000495039 SLITRK4Q8IW52 837 aa7.28□□□□□ -1.24
VPS50-219ENST00000495039 NKD1Q969G9 470 aa7.28□□□□□ -1.24
VPS50-219ENST00000495039 PALD1Q9ULE6 856 aa7.28□□□□□ -1.24
VPS50-219ENST00000495039 HCFC2Q9Y5Z7 792 aa7.28□□□□□ -1.24
VPS50-219ENST00000495039 C9IYK1 514 aa7.27□□□□□ -1.25
VPS50-219ENST00000495039 H0Y8X5 98 aa7.27□□□□□ -1.25
VPS50-219ENST00000495039 FGF10O15520 208 aaPredicted RBP7.27□□□□□ -1.25
VPS50-219ENST00000495039 PLA2G1BP04054 148 aaKnown RBP7.27□□□□□ -1.25
VPS50-219ENST00000495039 NOP2P46087 812 aaKnown RBP7.27□□□□□ -1.25
VPS50-219ENST00000495039 INTS3Q68E01 1043 aaKnown RBP7.27□□□□□ -1.25
VPS50-219ENST00000495039 HHIPL2Q6UWX4 724 aa7.27□□□□□ -1.25
VPS50-219ENST00000495039 SAPCD2Q86UD0 394 aa7.27□□□□□ -1.25
VPS50-219ENST00000495039 SMARCC1Q92922 1105 aaPredicted RBP7.27□□□□□ -1.25
VPS50-219ENST00000495039 SPATA25Q9BR10 227 aa7.27□□□□□ -1.25
VPS50-219ENST00000495039 NT5C1AQ9BXI3 368 aa7.27□□□□□ -1.25
VPS50-219ENST00000495039 KRTAP17-1Q9BYP8 105 aa7.27□□□□□ -1.25
VPS50-219ENST00000495039 SH3D21A4FU49 640 aa7.26□□□□□ -1.25
VPS50-219ENST00000495039 FAM86C2PA6NEL3 165 aa7.26□□□□□ -1.25
VPS50-219ENST00000495039 INSRRP14616 1297 aa7.26□□□□□ -1.25
VPS50-219ENST00000495039 ATF2P15336 505 aa7.26□□□□□ -1.25
VPS50-219ENST00000495039 PMS1P54277 932 aaKnown RBP7.26□□□□□ -1.25
VPS50-219ENST00000495039 HTRA3P83110 453 aa7.26□□□□□ -1.25
VPS50-219ENST00000495039 ZNF827Q17R98 1081 aa7.26□□□□□ -1.25
VPS50-219ENST00000495039 NOL9Q5SY16 702 aaKnown RBP7.26□□□□□ -1.25
VPS50-219ENST00000495039 ADGRG2Q8IZP9 1017 aa7.26□□□□□ -1.25
VPS50-219ENST00000495039 RGS22Q8NE09 1264 aa7.26□□□□□ -1.25
VPS50-219ENST00000495039 GPR20Q99678 358 aa7.26□□□□□ -1.25
VPS50-219ENST00000495039 DBR1Q9UK59 544 aaKnown RBP7.26□□□□□ -1.25
VPS50-219ENST00000495039 TIMELESSQ9UNS1 1208 aa7.26□□□□□ -1.25
VPS50-219ENST00000495039 MYRFQ9Y2G1 1151 aa7.26□□□□□ -1.25
VPS50-219ENST00000495039 A0A1B0GTL3 188 aa7.25□□□□□ -1.25
VPS50-219ENST00000495039 F8W031 263 aaPredicted RBP7.25□□□□□ -1.25
VPS50-219ENST00000495039 NCAM1P13591 858 aa7.25□□□□□ -1.25
VPS50-219ENST00000495039 PRR5P85299 388 aa7.25□□□□□ -1.25
VPS50-219ENST00000495039 PUM1Q14671 1186 aaKnown RBP eCLIP7.25□□□□□ -1.25
VPS50-219ENST00000495039 TBC1D8O95759 1140 aa7.24□□□□□ -1.25
VPS50-219ENST00000495039 ACRP10323 421 aa7.24□□□□□ -1.25
VPS50-219ENST00000495039 ZNF445P59923 1031 aa7.24□□□□□ -1.25
VPS50-219ENST00000495039 ANKRD39Q53RE8 183 aa7.24□□□□□ -1.25
VPS50-219ENST00000495039 TDRD10Q5VZ19 366 aaKnown RBP7.24□□□□□ -1.25
VPS50-219ENST00000495039 FERMT3Q86UX7 667 aa7.24□□□□□ -1.25
VPS50-219ENST00000495039 PLA2G2DQ9UNK4 145 aa7.24□□□□□ -1.25
VPS50-219ENST00000495039 FHOD1Q9Y613 1164 aa7.24□□□□□ -1.25
VPS50-219ENST00000495039 IMPDH2P12268 514 aa7.23□□□□□ -1.25
VPS50-219ENST00000495039 TACR1P25103 407 aa7.23□□□□□ -1.25
VPS50-219ENST00000495039 DCAF15Q66K64 600 aa7.23□□□□□ -1.25
VPS50-219ENST00000495039 FIBCD1Q8N539 461 aa7.23□□□□□ -1.25
VPS50-219ENST00000495039 TAB3Q8N5C8 712 aaPredicted RBP7.23□□□□□ -1.25
VPS50-219ENST00000495039 NLGN2Q8NFZ4 835 aa7.23□□□□□ -1.25
VPS50-219ENST00000495039 ZNF526Q8TF50 670 aaPredicted RBP7.23□□□□□ -1.25
VPS50-219ENST00000495039 PTCHD1Q96NR3 888 aa7.23□□□□□ -1.25
VPS50-219ENST00000495039 GP6Q9HCN6 339 aa7.23□□□□□ -1.25
VPS50-219ENST00000495039 ZNRF3Q9ULT6 936 aa7.23□□□□□ -1.25
VPS50-219ENST00000495039 SF3B6Q9Y3B4 125 aaKnown RBP7.23□□□□□ -1.25
VPS50-219ENST00000495039 ASGR2P07307 311 aa7.22□□□□□ -1.25
VPS50-219ENST00000495039 L1CAMP32004 1257 aa7.22□□□□□ -1.25
VPS50-219ENST00000495039 B3GNT8Q7Z7M8 397 aa7.22□□□□□ -1.25
VPS50-219ENST00000495039 USP48Q86UV5 1035 aa7.22□□□□□ -1.25
VPS50-219ENST00000495039 CABP7Q86V35 215 aa7.22□□□□□ -1.25
VPS50-219ENST00000495039 KIAA0825Q8IV33 1275 aa7.22□□□□□ -1.25
VPS50-219ENST00000495039 ALG3Q92685 438 aa7.22□□□□□ -1.25
VPS50-219ENST00000495039 BRF1Q92994 677 aa7.22□□□□□ -1.25
VPS50-219ENST00000495039 FCRL3Q96P31 734 aaPredicted RBP7.22□□□□□ -1.25
VPS50-219ENST00000495039 MC3RP41968 323 aa7.21□□□□□ -1.26
VPS50-219ENST00000495039 GJA9P57773 515 aa7.21□□□□□ -1.26
VPS50-219ENST00000495039 POU4F1Q01851 419 aa7.21□□□□□ -1.26
VPS50-219ENST00000495039 DLX2Q07687 328 aaPredicted RBP7.21□□□□□ -1.26
VPS50-219ENST00000495039 AXDND1Q5T1B0 1012 aaPredicted RBP7.21□□□□□ -1.26
VPS50-219ENST00000495039 PPFIBP1Q86W92 1011 aa7.21□□□□□ -1.26
VPS50-219ENST00000495039 CARFQ8N187 725 aa7.21□□□□□ -1.26
VPS50-219ENST00000495039 TM9SF2Q99805 663 aa7.21□□□□□ -1.26
VPS50-219ENST00000495039 BCL11AQ9H165 835 aa7.21□□□□□ -1.26
VPS50-219ENST00000495039 NOBOXO60393 691 aa7.2□□□□□ -1.26
VPS50-219ENST00000495039 CD3EP07766 207 aa7.2□□□□□ -1.26
VPS50-219ENST00000495039 GLI4P10075 376 aa7.2□□□□□ -1.26
VPS50-219ENST00000495039 ITGA4P13612 1032 aa7.2□□□□□ -1.26
VPS50-219ENST00000495039 IFNGR1P15260 489 aa7.2□□□□□ -1.26
VPS50-219ENST00000495039 CD247P20963 164 aa7.2□□□□□ -1.26
VPS50-219ENST00000495039 CNR2P34972 360 aa7.2□□□□□ -1.26
VPS50-219ENST00000495039 MAGEA10P43363 369 aaPredicted RBP7.2□□□□□ -1.26
VPS50-219ENST00000495039 TSPAN17Q96FV3 270 aa7.2□□□□□ -1.26
VPS50-219ENST00000495039 SPON2Q9BUD6 331 aa7.2□□□□□ -1.26
VPS50-219ENST00000495039 DDX1Q92499 740 aaKnown RBP7.19□□□□□ -1.26
VPS50-219ENST00000495039 LNPKQ9C0E8 428 aa7.19□□□□□ -1.26
VPS50-219ENST00000495039 NOL6Q9H6R4 1146 aaKnown RBP7.19□□□□□ -1.26
VPS50-219ENST00000495039 DUSP10Q9Y6W6 482 aa7.19□□□□□ -1.26
VPS50-219ENST00000495039 TP53P04637 393 aaPredicted RBP7.18□□□□□ -1.26
VPS50-219ENST00000495039 PMLP29590 882 aa7.18□□□□□ -1.26
VPS50-219ENST00000495039 TRIM26Q12899 539 aaPredicted RBP7.18□□□□□ -1.26
VPS50-219ENST00000495039 MRPL58Q14197 206 aaKnown RBP7.18□□□□□ -1.26
VPS50-219ENST00000495039 FERD3LQ96RJ6 166 aa7.18□□□□□ -1.26
VPS50-219ENST00000495039 SMPD4Q9NXE4 827 aa7.18□□□□□ -1.26
VPS50-219ENST00000495039 NTMQ9P121 344 aa7.18□□□□□ -1.26
VPS50-219ENST00000495039 NUDT5Q9UKK9 219 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms