RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 CCDC84Q86UT8 332 aaPredicted RBP6.84□□□□□ -1.31
PTCD3-219ENST00000494323 NBPF5PQ86XG9 351 aaPredicted RBP6.84□□□□□ -1.31
PTCD3-219ENST00000494323 TMEM130Q8N3G9 435 aa6.84□□□□□ -1.31
PTCD3-219ENST00000494323 STK35Q8TDR2 534 aa6.84□□□□□ -1.31
PTCD3-219ENST00000494323 UBXN4Q92575 508 aa6.84□□□□□ -1.31
PTCD3-219ENST00000494323 MASTLQ96GX5 879 aa6.84□□□□□ -1.31
PTCD3-219ENST00000494323 RHOVQ96L33 236 aa6.84□□□□□ -1.31
PTCD3-219ENST00000494323 GMLQ99445 158 aa6.84□□□□□ -1.31
PTCD3-219ENST00000494323 CAPN10Q9HC96 672 aa6.84□□□□□ -1.31
PTCD3-219ENST00000494323 ZNF277Q9NRM2 450 aaPredicted RBP6.84□□□□□ -1.31
PTCD3-219ENST00000494323 KRT82Q9NSB4 513 aa6.84□□□□□ -1.31
PTCD3-219ENST00000494323 MIS18AQ9NYP9 233 aa6.84□□□□□ -1.31
PTCD3-219ENST00000494323 LOC100289279A0A1B0GTE1 492 aa6.83□□□□□ -1.32
PTCD3-219ENST00000494323 MINDY4BA8MYZ0 360 aa6.83□□□□□ -1.32
PTCD3-219ENST00000494323 ADAM11O75078 769 aa6.83□□□□□ -1.32
PTCD3-219ENST00000494323 EIF4A3P38919 411 aaKnown RBP6.83□□□□□ -1.32
PTCD3-219ENST00000494323 GJA8P48165 433 aa6.83□□□□□ -1.32
PTCD3-219ENST00000494323 DCTN1Q14203 1278 aa6.83□□□□□ -1.32
PTCD3-219ENST00000494323 DUOXA2Q1HG44 320 aa6.83□□□□□ -1.32
PTCD3-219ENST00000494323 TRIM42Q8IWZ5 723 aa6.83□□□□□ -1.32
PTCD3-219ENST00000494323 NGEFQ8N5V2 710 aa6.83□□□□□ -1.32
PTCD3-219ENST00000494323 PSMG3-AS1Q96PY0 264 aa6.83□□□□□ -1.32
PTCD3-219ENST00000494323 MIR1-1HGQ9H1L0 117 aa6.83□□□□□ -1.32
PTCD3-219ENST00000494323 KCNK4Q9NYG8 393 aa6.83□□□□□ -1.32
PTCD3-219ENST00000494323 TLR6Q9Y2C9 796 aa6.83□□□□□ -1.32
PTCD3-219ENST00000494323 MRC1P22897 1456 aa6.83□□□□□ -1.32
PTCD3-219ENST00000494323 DICER1Q9UPY3 1922 aaKnown RBP6.83□□□□□ -1.32
PTCD3-219ENST00000494323 FER1L6Q2WGJ9 1857 aa6.83□□□□□ -1.32
PTCD3-219ENST00000494323 F6X3S4 739 aa6.82□□□□□ -1.32
PTCD3-219ENST00000494323 FOXN1O15353 648 aa6.82□□□□□ -1.32
PTCD3-219ENST00000494323 DDX3YO15523 660 aaKnown RBP6.82□□□□□ -1.32
PTCD3-219ENST00000494323 PF4P02776 101 aa6.82□□□□□ -1.32
PTCD3-219ENST00000494323 SNRPA1P09661 255 aaKnown RBP6.82□□□□□ -1.32
PTCD3-219ENST00000494323 NPR1P16066 1061 aa6.82□□□□□ -1.32
PTCD3-219ENST00000494323 GLB1P16278 677 aa6.82□□□□□ -1.32
PTCD3-219ENST00000494323 TFE3P19532 575 aaPredicted RBP6.82□□□□□ -1.32
PTCD3-219ENST00000494323 CAMK2GQ13555 558 aaPredicted RBP6.82□□□□□ -1.32
PTCD3-219ENST00000494323 HLFQ16534 295 aa6.82□□□□□ -1.32
PTCD3-219ENST00000494323 SNAP47Q5SQN1 464 aa6.82□□□□□ -1.32
PTCD3-219ENST00000494323 RASIP1Q5U651 963 aa6.82□□□□□ -1.32
PTCD3-219ENST00000494323 MAP1SQ66K74 1059 aaPredicted RBP6.82□□□□□ -1.32
PTCD3-219ENST00000494323 CLEC4GQ6UXB4 293 aa6.82□□□□□ -1.32
PTCD3-219ENST00000494323 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.82□□□□□ -1.32
PTCD3-219ENST00000494323 DZIP1LQ8IYY4 767 aaKnown RBP6.82□□□□□ -1.32
PTCD3-219ENST00000494323 SYNE4Q8N205 404 aa6.82□□□□□ -1.32
PTCD3-219ENST00000494323 AGGF1Q8N302 714 aaeCLIP6.82□□□□□ -1.32
PTCD3-219ENST00000494323 GRIN3AQ8TCU5 1115 aa6.82□□□□□ -1.32
PTCD3-219ENST00000494323 KCNB2Q92953 911 aa6.82□□□□□ -1.32
PTCD3-219ENST00000494323 TAF1DQ9H5J8 278 aaPredicted RBP6.82□□□□□ -1.32
PTCD3-219ENST00000494323 KCNQ5Q9NR82 932 aa6.82□□□□□ -1.32
PTCD3-219ENST00000494323 NIP7Q9Y221 180 aaKnown RBP eCLIP6.82□□□□□ -1.32
PTCD3-219ENST00000494323 DLEC1Q9Y238 1755 aa6.82□□□□□ -1.32
PTCD3-219ENST00000494323 CACNA1SQ13698 1873 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 ZNF541Q9H0D2 1346 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 LTBP3Q9NS15 1303 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 IQCA1LA6NCM1 817 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 TCERG1O14776 1098 aaKnown RBP6.81□□□□□ -1.32
PTCD3-219ENST00000494323 U2AF1L5P0DN76 240 aaPredicted RBP6.81□□□□□ -1.32
PTCD3-219ENST00000494323 U2AF1Q01081 240 aaKnown RBP eCLIP6.81□□□□□ -1.32
PTCD3-219ENST00000494323 PDE3AQ14432 1141 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 CCDC93Q567U6 631 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 SOGA3Q5TF21 947 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 PRR23CQ6ZRP0 262 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 ACAD11Q709F0 780 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 LDHDQ86WU2 507 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 KIAA0825Q8IV33 1275 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 CNTROBQ8N137 903 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 RTF1Q92541 710 aaKnown RBP6.81□□□□□ -1.32
PTCD3-219ENST00000494323 SPON2Q9BUD6 331 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 TANGO6Q9C0B7 1094 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 CACNA2D2Q9NY47 1150 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 PRKAG2Q9UGJ0 569 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 ADAMTS1Q9UHI8 967 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 INPP5FQ9Y2H2 1132 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 SUPT16HQ9Y5B9 1047 aaKnown RBP6.81□□□□□ -1.32
PTCD3-219ENST00000494323 UBR2Q8IWV8 1755 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 TIAM2Q8IVF5 1701 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 CEMIPQ8WUJ3 1361 aa6.81□□□□□ -1.32
PTCD3-219ENST00000494323 RNF123Q5XPI4 1314 aa6.8□□□□□ -1.32
PTCD3-219ENST00000494323 PASKQ96RG2 1323 aa6.8□□□□□ -1.32
PTCD3-219ENST00000494323 KLRG2A4D1S0 409 aaPredicted RBP6.8□□□□□ -1.32
PTCD3-219ENST00000494323 ECEL1O95672 775 aa6.8□□□□□ -1.32
PTCD3-219ENST00000494323 ALDH1B1P30837 517 aa6.8□□□□□ -1.32
PTCD3-219ENST00000494323 EPHX2P34913 555 aa6.8□□□□□ -1.32
PTCD3-219ENST00000494323 LBX1P52954 281 aa6.8□□□□□ -1.32
PTCD3-219ENST00000494323 GNL2Q13823 731 aaKnown RBP6.8□□□□□ -1.32
PTCD3-219ENST00000494323 TAF7Q15545 349 aaPredicted RBP6.8□□□□□ -1.32
PTCD3-219ENST00000494323 DEFB115Q30KQ5 88 aa6.8□□□□□ -1.32
PTCD3-219ENST00000494323 Q6ZS46 218 aa6.8□□□□□ -1.32
PTCD3-219ENST00000494323 RTKN2Q8IZC4 609 aa6.8□□□□□ -1.32
PTCD3-219ENST00000494323 UBASH3BQ8TF42 649 aa6.8□□□□□ -1.32
PTCD3-219ENST00000494323 ZNF296Q8WUU4 475 aaPredicted RBP6.8□□□□□ -1.32
PTCD3-219ENST00000494323 CFAP53Q96M91 514 aa6.8□□□□□ -1.32
PTCD3-219ENST00000494323 RUSC1Q9BVN2 902 aa6.8□□□□□ -1.32
PTCD3-219ENST00000494323 CCDC86Q9H6F5 360 aaKnown RBP6.8□□□□□ -1.32
PTCD3-219ENST00000494323 HACL1Q9UJ83 578 aa6.8□□□□□ -1.32
PTCD3-219ENST00000494323 NUDCQ9Y266 331 aa6.8□□□□□ -1.32
PTCD3-219ENST00000494323 ZNF652Q9Y2D9 606 aa6.8□□□□□ -1.32
PTCD3-219ENST00000494323 RRP7AQ9Y3A4 280 aaKnown RBP6.8□□□□□ -1.32
PTCD3-219ENST00000494323 PCDHB5Q9Y5E4 795 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms