RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 CABP5Q9NP86 173 aa14.36□□□□□ -0.11
UPF3A-210ENST00000493727 MTMR10Q9NXD2 777 aa14.36□□□□□ -0.11
UPF3A-210ENST00000493727 STXBP5LQ9Y2K9 1186 aa14.36□□□□□ -0.11
UPF3A-210ENST00000493727 XRCC5P13010 732 aaKnown RBP14.35□□□□□ -0.11
UPF3A-210ENST00000493727 ERVK-9P63128 1117 aa14.35□□□□□ -0.11
UPF3A-210ENST00000493727 ERVK-24P63145 666 aa14.35□□□□□ -0.11
UPF3A-210ENST00000493727 JAG1P78504 1218 aa14.35□□□□□ -0.11
UPF3A-210ENST00000493727 CERKLQ49MI3 558 aaPredicted RBP14.35□□□□□ -0.11
UPF3A-210ENST00000493727 LSG1Q9H089 658 aaKnown RBP14.35□□□□□ -0.11
UPF3A-210ENST00000493727 TXNRD2Q9NNW7 524 aa14.35□□□□□ -0.11
UPF3A-210ENST00000493727 MUC3AQ02505 3323 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 USP17L15C9J2P7 530 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 USP17L13C9JLJ4 530 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 USP17L11C9JVI0 530 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 USP17L18D6R9N7 530 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 USP17L22D6RA61 530 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 USP17L17D6RBQ6 530 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 USP17L19D6RCP7 530 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 USP17L20D6RJB6 530 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 PEX10O60683 326 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 POLR3DP05423 398 aaPredicted RBP14.34□□□□□ -0.11
UPF3A-210ENST00000493727 HSPD1P10809 573 aaKnown RBP14.34□□□□□ -0.11
UPF3A-210ENST00000493727 CYP2B6P20813 491 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 TDO2P48775 406 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 CCNA1P78396 465 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 PTH1RQ03431 593 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 USP17L24Q0WX57 530 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 ABCB5Q2M3G0 1257 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 ZNF697Q5TEC3 545 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 VPS53Q5VIR6 699 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 USP6NLQ92738 828 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 DSCC1Q9BVC3 393 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 KIAA1683Q9H0B3 1180 aa14.34□□□□□ -0.11
UPF3A-210ENST00000493727 PATL2C9JE40 543 aaKnown RBP14.33□□□□□ -0.12
UPF3A-210ENST00000493727 PRKAB2O43741 272 aa14.33□□□□□ -0.12
UPF3A-210ENST00000493727 RAB3GAP1Q15042 981 aa14.33□□□□□ -0.12
UPF3A-210ENST00000493727 NR6A1Q15406 480 aa14.33□□□□□ -0.12
UPF3A-210ENST00000493727 SHROOM1Q2M3G4 852 aaPredicted RBP14.33□□□□□ -0.12
UPF3A-210ENST00000493727 SDR42E1Q8WUS8 393 aa14.33□□□□□ -0.12
UPF3A-210ENST00000493727 NAPBQ9H115 298 aa14.33□□□□□ -0.12
UPF3A-210ENST00000493727 CWC22Q9HCG8 908 aaKnown RBP14.33□□□□□ -0.12
UPF3A-210ENST00000493727 RBPJLQ9UBG7 517 aa14.33□□□□□ -0.12
UPF3A-210ENST00000493727 RABGAP1Q9Y3P9 1069 aa14.33□□□□□ -0.12
UPF3A-210ENST00000493727 RBM8AQ9Y5S9 174 aaKnown RBP14.33□□□□□ -0.12
UPF3A-210ENST00000493727 LTBP2Q14767 1821 aa14.33□□□□□ -0.12
UPF3A-210ENST00000493727 BAZ2AQ9UIF9 1905 aaKnown RBP14.33□□□□□ -0.12
UPF3A-210ENST00000493727 RGS2P41220 211 aa14.32□□□□□ -0.12
UPF3A-210ENST00000493727 SKOR1P84550 965 aa14.32□□□□□ -0.12
UPF3A-210ENST00000493727 PLEKHH3Q7Z736 793 aa14.32□□□□□ -0.12
UPF3A-210ENST00000493727 AMOTL1Q8IY63 956 aa14.32□□□□□ -0.12
UPF3A-210ENST00000493727 EPS8L1Q8TE68 723 aa14.32□□□□□ -0.12
UPF3A-210ENST00000493727 PAGR1Q9BTK6 254 aa14.32□□□□□ -0.12
UPF3A-210ENST00000493727 UBE2OQ9C0C9 1292 aaKnown RBP14.32□□□□□ -0.12
UPF3A-210ENST00000493727 MCM9Q9NXL9 1143 aa14.32□□□□□ -0.12
UPF3A-210ENST00000493727 CTNNA3Q9UI47 895 aa14.32□□□□□ -0.12
UPF3A-210ENST00000493727 TTC28Q96AY4 2481 aa14.31□□□□□ -0.12
UPF3A-210ENST00000493727 EPB41L2O43491 1005 aaKnown RBP14.31□□□□□ -0.12
UPF3A-210ENST00000493727 ZKSCAN1P17029 563 aaPredicted RBP14.31□□□□□ -0.12
UPF3A-210ENST00000493727 SHMT1P34896 483 aa14.31□□□□□ -0.12
UPF3A-210ENST00000493727 PLCD1P51178 756 aa14.31□□□□□ -0.12
UPF3A-210ENST00000493727 GABPAQ06546 454 aa14.31□□□□□ -0.12
UPF3A-210ENST00000493727 CACNB2Q08289 660 aaPredicted RBP14.31□□□□□ -0.12
UPF3A-210ENST00000493727 ZYXQ15942 572 aaKnown RBP14.31□□□□□ -0.12
UPF3A-210ENST00000493727 LRRC26Q2I0M4 334 aa14.31□□□□□ -0.12
UPF3A-210ENST00000493727 RNF20Q5VTR2 975 aa14.31□□□□□ -0.12
UPF3A-210ENST00000493727 LBX2Q6XYB7 198 aa14.31□□□□□ -0.12
UPF3A-210ENST00000493727 CATSPERGQ6ZRH7 1159 aa14.31□□□□□ -0.12
UPF3A-210ENST00000493727 GPR142Q7Z601 462 aa14.31□□□□□ -0.12
UPF3A-210ENST00000493727 IFNL3Q8IZI9 196 aa14.31□□□□□ -0.12
UPF3A-210ENST00000493727 BAP1Q92560 729 aa14.31□□□□□ -0.12
UPF3A-210ENST00000493727 MAP4K1Q92918 833 aa14.31□□□□□ -0.12
UPF3A-210ENST00000493727 APBA2Q99767 749 aa14.31□□□□□ -0.12
UPF3A-210ENST00000493727 USP26Q9BXU7 913 aa14.31□□□□□ -0.12
UPF3A-210ENST00000493727 C22orf23Q9BZE7 217 aa14.31□□□□□ -0.12
UPF3A-210ENST00000493727 PORCNQ9H237 461 aa14.31□□□□□ -0.12
UPF3A-210ENST00000493727 ATP8A2Q9NTI2 1148 aa14.31□□□□□ -0.12
UPF3A-210ENST00000493727 SWAP70Q9UH65 585 aa14.31□□□□□ -0.12
UPF3A-210ENST00000493727 GSG1L2A8MUP6 293 aa14.3□□□□□ -0.12
UPF3A-210ENST00000493727 VCAM1P19320 739 aa14.3□□□□□ -0.12
UPF3A-210ENST00000493727 CCND3P30281 292 aaPredicted RBP14.3□□□□□ -0.12
UPF3A-210ENST00000493727 CCL14Q16627 93 aa14.3□□□□□ -0.12
UPF3A-210ENST00000493727 GIMAP6Q6P9H5 292 aa14.3□□□□□ -0.12
UPF3A-210ENST00000493727 TRIM67Q6ZTA4 783 aa14.3□□□□□ -0.12
UPF3A-210ENST00000493727 EPB41L4AQ9HCS5 686 aaPredicted RBP14.3□□□□□ -0.12
UPF3A-210ENST00000493727 DCP1AQ9NPI6 582 aaPredicted RBP14.3□□□□□ -0.12
UPF3A-210ENST00000493727 RLFQ13129 1914 aa14.3□□□□□ -0.12
UPF3A-210ENST00000493727 MINDY4BA8MYZ0 360 aa14.29□□□□□ -0.12
UPF3A-210ENST00000493727 FGAP02671 866 aa14.29□□□□□ -0.12
UPF3A-210ENST00000493727 WNT7BP56706 349 aa14.29□□□□□ -0.12
UPF3A-210ENST00000493727 SH3BP2P78314 561 aa14.29□□□□□ -0.12
UPF3A-210ENST00000493727 ALX1Q15699 326 aa14.29□□□□□ -0.12
UPF3A-210ENST00000493727 IMMTQ16891 758 aaKnown RBP14.29□□□□□ -0.12
UPF3A-210ENST00000493727 ARPP21Q9UBL0 812 aaPredicted RBP14.29□□□□□ -0.12
UPF3A-210ENST00000493727 IVNS1ABPQ9Y6Y0 642 aa14.29□□□□□ -0.12
UPF3A-210ENST00000493727 ZMYM6O95789 1325 aa14.29□□□□□ -0.12
UPF3A-210ENST00000493727 SLC15A5A6NIM6 579 aa14.28□□□□□ -0.12
UPF3A-210ENST00000493727 MPHOSPH10O00566 681 aaKnown RBP14.28□□□□□ -0.12
UPF3A-210ENST00000493727 ZNF213O14771 459 aa14.28□□□□□ -0.12
UPF3A-210ENST00000493727 FOXP2O15409 715 aa14.28□□□□□ -0.12
UPF3A-210ENST00000493727 HAND2P61296 217 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms