RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 CYBAP13498 195 aa12.59□□□□□ -0.39
COL6A3-214ENST00000493608 CAPN2P17655 700 aa12.59□□□□□ -0.39
COL6A3-214ENST00000493608 PTPN5P54829 565 aa12.59□□□□□ -0.39
COL6A3-214ENST00000493608 MFAP1P55081 439 aaKnown RBP12.59□□□□□ -0.39
COL6A3-214ENST00000493608 KCTD2Q14681 263 aa12.59□□□□□ -0.39
COL6A3-214ENST00000493608 AKNAD1Q5T1N1 836 aa12.59□□□□□ -0.39
COL6A3-214ENST00000493608 OLFML2BQ68BL8 750 aa12.59□□□□□ -0.39
COL6A3-214ENST00000493608 MFSD6Q6ZSS7 791 aa12.59□□□□□ -0.39
COL6A3-214ENST00000493608 TBC1D10CQ8IV04 446 aa12.59□□□□□ -0.39
COL6A3-214ENST00000493608 ANKLE1Q8NAG6 615 aa12.59□□□□□ -0.39
COL6A3-214ENST00000493608 TEX13BQ9BXU2 312 aa12.59□□□□□ -0.39
COL6A3-214ENST00000493608 IL25Q9H293 177 aa12.59□□□□□ -0.39
COL6A3-214ENST00000493608 SLC38A10Q9HBR0 1119 aa12.59□□□□□ -0.39
COL6A3-214ENST00000493608 TSHZ2Q9NRE2 1034 aa12.59□□□□□ -0.39
COL6A3-214ENST00000493608 KIAA1468Q9P260 1216 aa12.59□□□□□ -0.39
COL6A3-214ENST00000493608 GOLGA8CPA6NN73 597 aa12.58□□□□□ -0.4
COL6A3-214ENST00000493608 HIP1O00291 1037 aa12.58□□□□□ -0.4
COL6A3-214ENST00000493608 ZNF213O14771 459 aa12.58□□□□□ -0.4
COL6A3-214ENST00000493608 STAT2P52630 851 aa12.58□□□□□ -0.4
COL6A3-214ENST00000493608 TSR1Q2NL82 804 aaKnown RBP12.58□□□□□ -0.4
COL6A3-214ENST00000493608 ZNF792Q3KQV3 632 aa12.58□□□□□ -0.4
COL6A3-214ENST00000493608 TTC22Q5TAA0 569 aa12.58□□□□□ -0.4
COL6A3-214ENST00000493608 TTBK2Q6IQ55 1244 aa12.58□□□□□ -0.4
COL6A3-214ENST00000493608 RCSD1Q6JBY9 416 aa12.58□□□□□ -0.4
COL6A3-214ENST00000493608 CHURC1Q8WUH1 139 aa12.58□□□□□ -0.4
COL6A3-214ENST00000493608 STAG1Q8WVM7 1258 aa12.58□□□□□ -0.4
COL6A3-214ENST00000493608 DDX11Q96FC9 970 aa12.58□□□□□ -0.4
COL6A3-214ENST00000493608 TMEM47Q9BQJ4 181 aa12.58□□□□□ -0.4
COL6A3-214ENST00000493608 ZKSCAN3Q9BRR0 538 aa12.58□□□□□ -0.4
COL6A3-214ENST00000493608 HOMER2Q9NSB8 354 aa12.58□□□□□ -0.4
COL6A3-214ENST00000493608 DDX20Q9UHI6 824 aaKnown RBP12.58□□□□□ -0.4
COL6A3-214ENST00000493608 SYNPO2Q9UMS6 1093 aa12.58□□□□□ -0.4
COL6A3-214ENST00000493608 NR2E3Q9Y5X4 410 aa12.58□□□□□ -0.4
COL6A3-214ENST00000493608 ZMYM6O95789 1325 aa12.58□□□□□ -0.4
COL6A3-214ENST00000493608 MCM3APO60318 1980 aa12.58□□□□□ -0.4
COL6A3-214ENST00000493608 TAL1P17542 331 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-214ENST00000493608 SLC16A2P36021 539 aa12.57□□□□□ -0.4
COL6A3-214ENST00000493608 CCDC96Q2M329 555 aa12.57□□□□□ -0.4
COL6A3-214ENST00000493608 HABP4Q5JVS0 413 aaKnown RBP12.57□□□□□ -0.4
COL6A3-214ENST00000493608 GJC2Q5T442 439 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-214ENST00000493608 CCDC174Q6PII3 467 aa12.57□□□□□ -0.4
COL6A3-214ENST00000493608 FAM160B2Q86V87 743 aa12.57□□□□□ -0.4
COL6A3-214ENST00000493608 LAPTM4BQ86VI4 370 aa12.57□□□□□ -0.4
COL6A3-214ENST00000493608 C7orf61Q8IZ16 206 aa12.57□□□□□ -0.4
COL6A3-214ENST00000493608 GMCL1Q96IK5 515 aa12.57□□□□□ -0.4
COL6A3-214ENST00000493608 AGBL1Q96MI9 1066 aa12.57□□□□□ -0.4
COL6A3-214ENST00000493608 GPCPD1Q9NPB8 672 aa12.57□□□□□ -0.4
COL6A3-214ENST00000493608 PFASO15067 1338 aa12.57□□□□□ -0.4
COL6A3-214ENST00000493608 NEDD4P46934 1319 aa12.57□□□□□ -0.4
COL6A3-214ENST00000493608 FRMPD2Q68DX3 1309 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-214ENST00000493608 ATP2A1O14983 1001 aa12.56□□□□□ -0.4
COL6A3-214ENST00000493608 TOP1P11387 765 aaKnown RBP12.56□□□□□ -0.4
COL6A3-214ENST00000493608 COPB2P35606 906 aa12.56□□□□□ -0.4
COL6A3-214ENST00000493608 NOVP48745 357 aa12.56□□□□□ -0.4
COL6A3-214ENST00000493608 ANKRD35Q8N283 1001 aa12.56□□□□□ -0.4
COL6A3-214ENST00000493608 TINF2Q9BSI4 451 aa12.56□□□□□ -0.4
COL6A3-214ENST00000493608 SENP6Q9GZR1 1112 aaPredicted RBP12.56□□□□□ -0.4
COL6A3-214ENST00000493608 TCP11L1Q9NUJ3 509 aa12.56□□□□□ -0.4
COL6A3-214ENST00000493608 PRR12Q9ULL5 1215 aa12.56□□□□□ -0.4
COL6A3-214ENST00000493608 SEPT4O43236 478 aa12.55□□□□□ -0.4
COL6A3-214ENST00000493608 MAP3K7O43318 606 aa12.55□□□□□ -0.4
COL6A3-214ENST00000493608 KDM4AO75164 1064 aa12.55□□□□□ -0.4
COL6A3-214ENST00000493608 ALAS1P13196 640 aa12.55□□□□□ -0.4
COL6A3-214ENST00000493608 SYN1P17600 705 aa12.55□□□□□ -0.4
COL6A3-214ENST00000493608 SKAP1Q86WV1 359 aa12.55□□□□□ -0.4
COL6A3-214ENST00000493608 DCAF4Q8WV16 495 aa12.55□□□□□ -0.4
COL6A3-214ENST00000493608 ESR2Q92731 530 aa12.55□□□□□ -0.4
COL6A3-214ENST00000493608 DSCC1Q9BVC3 393 aa12.55□□□□□ -0.4
COL6A3-214ENST00000493608 RNF41Q9H4P4 317 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-214ENST00000493608 ZMYND8Q9ULU4 1186 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-214ENST00000493608 ZNF536O15090 1300 aa12.55□□□□□ -0.4
COL6A3-214ENST00000493608 LAMA4Q16363 1823 aa12.55□□□□□ -0.4
COL6A3-214ENST00000493608 TRIOBPQ9H2D6 2365 aa12.55□□□□□ -0.4
COL6A3-214ENST00000493608 B4E1Z4 1266 aa12.54□□□□□ -0.4
COL6A3-214ENST00000493608 MSCO60682 206 aa12.54□□□□□ -0.4
COL6A3-214ENST00000493608 COL6A1P12109 1028 aa12.54□□□□□ -0.4
COL6A3-214ENST00000493608 CHMLP26374 656 aa12.54□□□□□ -0.4
COL6A3-214ENST00000493608 CNTN2Q02246 1040 aa12.54□□□□□ -0.4
COL6A3-214ENST00000493608 IMMTQ16891 758 aaKnown RBP12.54□□□□□ -0.4
COL6A3-214ENST00000493608 LRRC26Q2I0M4 334 aa12.54□□□□□ -0.4
COL6A3-214ENST00000493608 CHST13Q8NET6 341 aa12.54□□□□□ -0.4
COL6A3-214ENST00000493608 LENG1Q96BZ8 264 aaPredicted RBP12.54□□□□□ -0.4
COL6A3-214ENST00000493608 TRERF1Q96PN7 1200 aa12.54□□□□□ -0.4
COL6A3-214ENST00000493608 RNF146Q9NTX7 359 aa12.54□□□□□ -0.4
COL6A3-214ENST00000493608 RBM27Q9P2N5 1060 aaKnown RBP12.54□□□□□ -0.4
COL6A3-214ENST00000493608 DIS3Q9Y2L1 958 aaKnown RBP12.54□□□□□ -0.4
COL6A3-214ENST00000493608 DNAJC25-GNG10A0A024R161 153 aa12.53□□□□□ -0.4
COL6A3-214ENST00000493608 PLA2G6O60733 806 aa12.53□□□□□ -0.4
COL6A3-214ENST00000493608 SNAI1O95863 264 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-214ENST00000493608 ZNF865P0CJ78 1059 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-214ENST00000493608 FDX1P10109 184 aa12.53□□□□□ -0.4
COL6A3-214ENST00000493608 PCP11498 1178 aaKnown RBP12.53□□□□□ -0.4
COL6A3-214ENST00000493608 OAZ1P54368 228 aa12.53□□□□□ -0.4
COL6A3-214ENST00000493608 PTH1RQ03431 593 aa12.53□□□□□ -0.4
COL6A3-214ENST00000493608 MUM1L1Q5H9M0 696 aa12.53□□□□□ -0.4
COL6A3-214ENST00000493608 ARRDC4Q8NCT1 418 aa12.53□□□□□ -0.4
COL6A3-214ENST00000493608 ACAD9Q9H845 621 aa12.53□□□□□ -0.4
COL6A3-214ENST00000493608 ZSWIM5Q9P217 1185 aa12.53□□□□□ -0.4
COL6A3-214ENST00000493608 FBXO40Q9UH90 709 aa12.53□□□□□ -0.4
COL6A3-214ENST00000493608 CTNNA3Q9UI47 895 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms