RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 ARMCX5Q6P1M9 558 aa12.15□□□□□ -0.46
USP4-214ENST00000491791 NYAP1Q6ZVC0 841 aa12.15□□□□□ -0.46
USP4-214ENST00000491791 NEK8Q86SG6 692 aa12.15□□□□□ -0.46
USP4-214ENST00000491791 PDILTQ8N807 584 aa12.15□□□□□ -0.46
USP4-214ENST00000491791 DCAF4Q8WV16 495 aa12.15□□□□□ -0.46
USP4-214ENST00000491791 MTMR9Q96QG7 549 aa12.15□□□□□ -0.46
USP4-214ENST00000491791 PIGSQ96S52 555 aa12.15□□□□□ -0.46
USP4-214ENST00000491791 MTRQ99707 1265 aa12.15□□□□□ -0.46
USP4-214ENST00000491791 JMJD4Q9H9V9 463 aa12.15□□□□□ -0.46
USP4-214ENST00000491791 RIC8AQ9NPQ8 531 aa12.15□□□□□ -0.46
USP4-214ENST00000491791 DISC1Q9NRI5 854 aa12.15□□□□□ -0.46
USP4-214ENST00000491791 KBTBD4Q9NVX7 518 aa12.15□□□□□ -0.46
USP4-214ENST00000491791 R3HCC1Q9Y3T6 440 aaKnown RBP12.15□□□□□ -0.46
USP4-214ENST00000491791 BAZ2BQ9UIF8 2168 aaKnown RBP12.15□□□□□ -0.47
USP4-214ENST00000491791 A0A1B0GTH6 734 aa12.14□□□□□ -0.47
USP4-214ENST00000491791 KIF2AO00139 706 aaPredicted RBP12.14□□□□□ -0.47
USP4-214ENST00000491791 FZD9O00144 591 aa12.14□□□□□ -0.47
USP4-214ENST00000491791 CTCFP49711 727 aaPredicted RBP12.14□□□□□ -0.47
USP4-214ENST00000491791 MMP14P50281 582 aa12.14□□□□□ -0.47
USP4-214ENST00000491791 FXR2P51116 673 aaKnown RBP eCLIP12.14□□□□□ -0.47
USP4-214ENST00000491791 NFIAQ12857 509 aa12.14□□□□□ -0.47
USP4-214ENST00000491791 PDIA5Q14554 519 aa12.14□□□□□ -0.47
USP4-214ENST00000491791 NR1I3Q14994 352 aa12.14□□□□□ -0.47
USP4-214ENST00000491791 INF2Q27J81 1249 aa12.14□□□□□ -0.47
USP4-214ENST00000491791 NAALADL2Q58DX5 795 aa12.14□□□□□ -0.47
USP4-214ENST00000491791 ZNF658Q5TYW1 1059 aaPredicted RBP12.14□□□□□ -0.47
USP4-214ENST00000491791 APTXQ7Z2E3 356 aaKnown RBP12.14□□□□□ -0.47
USP4-214ENST00000491791 FCHSD1Q86WN1 690 aa12.14□□□□□ -0.47
USP4-214ENST00000491791 REXO1Q8N1G1 1221 aaKnown RBP12.14□□□□□ -0.47
USP4-214ENST00000491791 IGSF22Q8N9C0 903 aa12.14□□□□□ -0.47
USP4-214ENST00000491791 GMCL1P1Q8NEA9 526 aa12.14□□□□□ -0.47
USP4-214ENST00000491791 CTAGE1Q96RT6 745 aa12.14□□□□□ -0.47
USP4-214ENST00000491791 NAP1L4Q99733 375 aaKnown RBP12.14□□□□□ -0.47
USP4-214ENST00000491791 MXD3Q9BW11 206 aa12.14□□□□□ -0.47
USP4-214ENST00000491791 TMEM60Q9H2L4 133 aa12.14□□□□□ -0.47
USP4-214ENST00000491791 DNAJC18Q9H819 358 aa12.14□□□□□ -0.47
USP4-214ENST00000491791 DBNDD1Q9H9R9 158 aa12.14□□□□□ -0.47
USP4-214ENST00000491791 PRDM10Q9NQV6 1147 aa12.14□□□□□ -0.47
USP4-214ENST00000491791 RWDD2AQ9UIY3 292 aa12.14□□□□□ -0.47
USP4-214ENST00000491791 NFE2L3Q9Y4A8 694 aa12.14□□□□□ -0.47
USP4-214ENST00000491791 F8W031 263 aaPredicted RBP12.13□□□□□ -0.47
USP4-214ENST00000491791 ZBTB5O15062 677 aa12.13□□□□□ -0.47
USP4-214ENST00000491791 ITGBL1O95965 494 aaPredicted RBP12.13□□□□□ -0.47
USP4-214ENST00000491791 SERPINC1P01008 464 aa12.13□□□□□ -0.47
USP4-214ENST00000491791 OR52Z1P0C646 297 aa12.13□□□□□ -0.47
USP4-214ENST00000491791 PPP1R2P41236 205 aa12.13□□□□□ -0.47
USP4-214ENST00000491791 SCNN1DP51172 638 aa12.13□□□□□ -0.47
USP4-214ENST00000491791 FKBP1CQ5VVH2 108 aa12.13□□□□□ -0.47
USP4-214ENST00000491791 ISM2Q6H9L7 571 aa12.13□□□□□ -0.47
USP4-214ENST00000491791 CNNM4Q6P4Q7 775 aa12.13□□□□□ -0.47
USP4-214ENST00000491791 TMEM179Q6ZVK1 233 aa12.13□□□□□ -0.47
USP4-214ENST00000491791 SH3BP5LQ7L8J4 393 aa12.13□□□□□ -0.47
USP4-214ENST00000491791 FILIP1Q7Z7B0 1213 aa12.13□□□□□ -0.47
USP4-214ENST00000491791 GRAMD1CQ8IYS0 662 aa12.13□□□□□ -0.47
USP4-214ENST00000491791 CCAR2Q8N163 923 aaKnown RBP12.13□□□□□ -0.47
USP4-214ENST00000491791 C17orf53Q8N3J3 647 aaPredicted RBP12.13□□□□□ -0.47
USP4-214ENST00000491791 MTMR14Q8NCE2 650 aa12.13□□□□□ -0.47
USP4-214ENST00000491791 RASGRP4Q8TDF6 673 aa12.13□□□□□ -0.47
USP4-214ENST00000491791 DPF2Q92785 391 aa12.13□□□□□ -0.47
USP4-214ENST00000491791 FBXW7Q969H0 707 aa12.13□□□□□ -0.47
USP4-214ENST00000491791 GMLQ99445 158 aa12.13□□□□□ -0.47
USP4-214ENST00000491791 INTS13Q9NVM9 706 aa12.13□□□□□ -0.47
USP4-214ENST00000491791 MYH4Q9Y623 1939 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.12□□□□□ -0.47
USP4-214ENST00000491791 CCP110O43303 1012 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 NRDCO43847 1150 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 EDIL3O43854 480 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 RHOBTB3O94955 611 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 CD44P16070 742 aaKnown RBP12.12□□□□□ -0.47
USP4-214ENST00000491791 SFPQP23246 707 aaKnown RBP eCLIP12.12□□□□□ -0.47
USP4-214ENST00000491791 PBX1P40424 430 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 UBA7P41226 1012 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 AFMP43652 599 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 VEGFBP49765 207 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 ADCY7P51828 1080 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 MRPL12P52815 198 aaKnown RBP12.12□□□□□ -0.47
USP4-214ENST00000491791 SPAG1Q07617 926 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 ARID5BQ14865 1188 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 DEFB115Q30KQ5 88 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 RRAGBQ5VZM2 374 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 FOXR2Q6PJQ5 311 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 BTNL9Q6UXG8 535 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 TMC6Q7Z403 805 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 SIAH1Q8IUQ4 282 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 ZFPM1Q8IX07 1006 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 ADGRF4Q8IZF3 695 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 LARGE2Q8N3Y3 721 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 GMCL1Q96IK5 515 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 C7orf25Q9BPX7 421 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 KCNQ5Q9NR82 932 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 ABT1Q9ULW3 272 aaKnown RBP12.12□□□□□ -0.47
USP4-214ENST00000491791 PAXBP1Q9Y5B6 917 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 GJA3Q9Y6H8 435 aa12.12□□□□□ -0.47
USP4-214ENST00000491791 ITIH6Q6UXX5 1313 aa12.11□□□□□ -0.47
USP4-214ENST00000491791 CYP3A7-CYP3A51PA0A087WV96 503 aa12.11□□□□□ -0.47
USP4-214ENST00000491791 DDTLA6NHG4 134 aaPredicted RBP12.11□□□□□ -0.47
USP4-214ENST00000491791 RPN1P04843 607 aaKnown RBP12.11□□□□□ -0.47
USP4-214ENST00000491791 VIL1P09327 827 aaKnown RBP12.11□□□□□ -0.47
USP4-214ENST00000491791 GCFC2P16383 781 aaKnown RBP12.11□□□□□ -0.47
USP4-214ENST00000491791 CYP3A7P24462 503 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms