RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 EPHB1P54762 984 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 KCTD1Q719H9 257 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 SLC7A3Q8WY07 619 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 ALKBH8Q96BT7 664 aaKnown RBP14.38□□□□□ -0.11
COL6A3-212ENST00000491769 FAM8A1Q9UBU6 413 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 E7EWF7 191 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 DPYSL4O14531 572 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 DTNBO60941 627 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 NLRP12P59046 1061 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 ERFEQ4G0M1 354 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 CFAP221Q4G0U5 840 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 LRRC43Q8N309 656 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 ELMOD1Q8N336 334 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 CRKLP46109 303 aaKnown RBP14.37□□□□□ -0.11
COL6A3-212ENST00000491769 N4BP2L2Q92802 583 aaPredicted RBP14.37□□□□□ -0.11
COL6A3-212ENST00000491769 HVCN1Q96D96 273 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 JPH2Q9BR39 696 aaPredicted RBP14.37□□□□□ -0.11
COL6A3-212ENST00000491769 SERTAD1Q9UHV2 236 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 XDHP47989 1333 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 CCDC93Q567U6 631 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 LRCH2Q5VUJ6 765 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 NEK8Q86SG6 692 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 GRK7Q8WTQ7 553 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 MTRQ99707 1265 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 LARSQ9P2J5 1176 aaKnown RBP14.37□□□□□ -0.11
COL6A3-212ENST00000491769 OSTNP61366 133 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 BFSP1Q12934 665 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 IFNL3Q8IZI9 196 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 ATP6V0A1Q93050 837 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 USP26Q9BXU7 913 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 RABGAP1Q9Y3P9 1069 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 FAM173BQ6P4H8 233 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 FASTKD5Q7L8L6 764 aaKnown RBP14.37□□□□□ -0.11
COL6A3-212ENST00000491769 CCDC84Q86UT8 332 aaPredicted RBP14.37□□□□□ -0.11
COL6A3-212ENST00000491769 IFIH1Q9BYX4 1025 aaKnown RBP14.37□□□□□ -0.11
COL6A3-212ENST00000491769 LOC102724428A0A0B4J2F2 783 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 WDR64B1ANS9 1081 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 THAP12O43422 761 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 SIK1P57059 783 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 RAB44Q7Z6P3 723 aaPredicted RBP14.37□□□□□ -0.11
COL6A3-212ENST00000491769 CCDC13Q8IYE1 715 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 RSRC1Q96IZ7 334 aaKnown RBP14.37□□□□□ -0.11
COL6A3-212ENST00000491769 TTC1Q99614 292 aa14.37□□□□□ -0.11
COL6A3-212ENST00000491769 CCNYQ8ND76 341 aa14.36□□□□□ -0.11
COL6A3-212ENST00000491769 NFE2L3Q9Y4A8 694 aa14.36□□□□□ -0.11
COL6A3-212ENST00000491769 ARHGAP42A6NI28 874 aa14.36□□□□□ -0.11
COL6A3-212ENST00000491769 TUBBP07437 444 aa14.36□□□□□ -0.11
COL6A3-212ENST00000491769 PNOCQ13519 176 aa14.36□□□□□ -0.11
COL6A3-212ENST00000491769 ADAT2Q7Z6V5 191 aaKnown RBP14.36□□□□□ -0.11
COL6A3-212ENST00000491769 INTS4Q96HW7 963 aaKnown RBP14.36□□□□□ -0.11
COL6A3-212ENST00000491769 HAUS8Q9BT25 410 aa14.36□□□□□ -0.11
COL6A3-212ENST00000491769 COL4A3BPQ9Y5P4 624 aa14.36□□□□□ -0.11
COL6A3-212ENST00000491769 ZNF18P17022 549 aa14.36□□□□□ -0.11
COL6A3-212ENST00000491769 MARK3P27448 753 aa14.36□□□□□ -0.11
COL6A3-212ENST00000491769 GTF2A1P52655 376 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-212ENST00000491769 SNX21Q969T3 373 aa14.36□□□□□ -0.11
COL6A3-212ENST00000491769 RAB17Q9H0T7 212 aa14.36□□□□□ -0.11
COL6A3-212ENST00000491769 ARMCX3Q9UH62 379 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-212ENST00000491769 NEURL1BA8MQ27 555 aa14.36□□□□□ -0.11
COL6A3-212ENST00000491769 NVLO15381 856 aaKnown RBP14.36□□□□□ -0.11
COL6A3-212ENST00000491769 OR52Z1P0C646 297 aa14.36□□□□□ -0.11
COL6A3-212ENST00000491769 RNF219Q5W0B1 726 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-212ENST00000491769 RUFY4Q6ZNE9 571 aa14.36□□□□□ -0.11
COL6A3-212ENST00000491769 CROCCP2Q86T23 111 aa14.36□□□□□ -0.11
COL6A3-212ENST00000491769 CDC26Q8NHZ8 85 aa14.36□□□□□ -0.11
COL6A3-212ENST00000491769 MGEA5O60502 916 aa14.35□□□□□ -0.11
COL6A3-212ENST00000491769 NSFP46459 744 aaKnown RBP14.35□□□□□ -0.11
COL6A3-212ENST00000491769 KCNQ4P56696 695 aa14.35□□□□□ -0.11
COL6A3-212ENST00000491769 MMEL1Q495T6 779 aa14.35□□□□□ -0.11
COL6A3-212ENST00000491769 DSTYKQ6XUX3 929 aa14.35□□□□□ -0.11
COL6A3-212ENST00000491769 TMTC1Q8IUR5 882 aa14.35□□□□□ -0.11
COL6A3-212ENST00000491769 RNF139Q8WU17 664 aa14.35□□□□□ -0.11
COL6A3-212ENST00000491769 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.35□□□□□ -0.11
COL6A3-212ENST00000491769 HOXB7P09629 217 aa14.35□□□□□ -0.11
COL6A3-212ENST00000491769 ODR4Q5SWX8 454 aa14.35□□□□□ -0.11
COL6A3-212ENST00000491769 CACTINQ8WUQ7 758 aaKnown RBP14.35□□□□□ -0.11
COL6A3-212ENST00000491769 SUDS3Q9H7L9 328 aaPredicted RBP14.35□□□□□ -0.11
COL6A3-212ENST00000491769 PIDD1Q9HB75 910 aa14.35□□□□□ -0.11
COL6A3-212ENST00000491769 TSKSQ9UJT2 592 aa14.35□□□□□ -0.11
COL6A3-212ENST00000491769 PAK2Q13177 524 aa14.35□□□□□ -0.11
COL6A3-212ENST00000491769 OTUD7AQ8TE49 926 aaPredicted RBP14.35□□□□□ -0.11
COL6A3-212ENST00000491769 FAM71BQ8TC56 605 aa14.35□□□□□ -0.11
COL6A3-212ENST00000491769 MMTAG2Q9BU76 263 aaKnown RBP14.35□□□□□ -0.11
COL6A3-212ENST00000491769 KMT5AQ9NQR1 393 aa14.35□□□□□ -0.11
COL6A3-212ENST00000491769 BABAM1Q9NWV8 329 aa14.35□□□□□ -0.11
COL6A3-212ENST00000491769 STX2P32856 288 aa14.35□□□□□ -0.11
COL6A3-212ENST00000491769 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.35□□□□□ -0.11
COL6A3-212ENST00000491769 MAP7D3Q8IWC1 876 aa14.35□□□□□ -0.11
COL6A3-212ENST00000491769 ZBTB38Q8NAP3 1195 aaPredicted RBP14.35□□□□□ -0.11
COL6A3-212ENST00000491769 GJA10Q969M2 543 aa14.35□□□□□ -0.11
COL6A3-212ENST00000491769 ARHGEF37A1IGU5 675 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 TROVE2P10155 538 aaKnown RBP eCLIP14.34□□□□□ -0.11
COL6A3-212ENST00000491769 TFAMQ00059 246 aaKnown RBP14.34□□□□□ -0.11
COL6A3-212ENST00000491769 MTX1Q13505 466 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 CIAPIN1Q6FI81 312 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 AMNQ9BXJ7 453 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 PPFIA4O75335 1185 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 MYL7Q01449 175 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 MYSM1Q5VVJ2 828 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 THOC2Q8NI27 1593 aaKnown RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms