RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 IQSEC1Q6DN90 963 aa11.13□□□□□ -0.63
COL17A1-207ENST00000488320 AACSQ86V21 672 aa11.13□□□□□ -0.63
COL17A1-207ENST00000488320 VWCEQ96DN2 955 aa11.13□□□□□ -0.63
COL17A1-207ENST00000488320 FGD4Q96M96 766 aa11.13□□□□□ -0.63
COL17A1-207ENST00000488320 KATNBL1Q9H079 304 aa11.13□□□□□ -0.63
COL17A1-207ENST00000488320 KCNH6Q9H252 994 aa11.13□□□□□ -0.63
COL17A1-207ENST00000488320 UBE2ZQ9H832 354 aaPredicted RBP11.13□□□□□ -0.63
COL17A1-207ENST00000488320 TRMT13Q9NUP7 481 aaKnown RBP11.13□□□□□ -0.63
COL17A1-207ENST00000488320 GNEQ9Y223 722 aaKnown RBP11.13□□□□□ -0.63
COL17A1-207ENST00000488320 COG6Q9Y2V7 657 aa11.13□□□□□ -0.63
COL17A1-207ENST00000488320 TRANK1O15050 2925 aa11.13□□□□□ -0.63
COL17A1-207ENST00000488320 BAZ2AQ9UIF9 1905 aaKnown RBP11.13□□□□□ -0.63
COL17A1-207ENST00000488320 ZNF536O15090 1300 aa11.12□□□□□ -0.63
COL17A1-207ENST00000488320 TNKSO95271 1327 aa11.12□□□□□ -0.63
COL17A1-207ENST00000488320 USP17L12C9JPN9 530 aa11.12□□□□□ -0.63
COL17A1-207ENST00000488320 USP17L21D6R901 530 aa11.12□□□□□ -0.63
COL17A1-207ENST00000488320 GOLIM4O00461 696 aa11.12□□□□□ -0.63
COL17A1-207ENST00000488320 SMPD1P17405 629 aa11.12□□□□□ -0.63
COL17A1-207ENST00000488320 KCNA5P22460 613 aa11.12□□□□□ -0.63
COL17A1-207ENST00000488320 PTGS1P23219 599 aa11.12□□□□□ -0.63
COL17A1-207ENST00000488320 PTCRAQ6ISU1 281 aaPredicted RBP11.12□□□□□ -0.63
COL17A1-207ENST00000488320 C16orf86Q6ZW13 317 aa11.12□□□□□ -0.63
COL17A1-207ENST00000488320 EEPD1Q7L9B9 569 aa11.12□□□□□ -0.63
COL17A1-207ENST00000488320 TRMT2AQ8IZ69 625 aaKnown RBP11.12□□□□□ -0.63
COL17A1-207ENST00000488320 GDPD5Q8WTR4 605 aa11.12□□□□□ -0.63
COL17A1-207ENST00000488320 DNAJC2Q99543 621 aaKnown RBP11.12□□□□□ -0.63
COL17A1-207ENST00000488320 GPHNQ9NQX3 736 aaPredicted RBP11.12□□□□□ -0.63
COL17A1-207ENST00000488320 MTUS1Q9ULD2 1270 aa11.12□□□□□ -0.63
COL17A1-207ENST00000488320 ISY1Q9ULR0 285 aaKnown RBP11.12□□□□□ -0.63
COL17A1-207ENST00000488320 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.11□□□□□ -0.63
COL17A1-207ENST00000488320 DCXO43602 365 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 LPXNO60711 386 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 NDUFB10O96000 172 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 MYL3P08590 195 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 IQCF3P0C7M6 154 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 TRIM27P14373 513 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 IL9P15248 144 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 LEXMQ3ZCV2 418 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 KIAA1211Q6ZU35 1233 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 SPRED2Q7Z698 418 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 STK11IPQ8N1F8 1099 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.11□□□□□ -0.63
COL17A1-207ENST00000488320 CRBNQ96SW2 442 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 BCL11AQ9H165 835 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 C1orf115Q9H7X2 142 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 ACAD9Q9H845 621 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 MKNK2Q9HBH9 465 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 SLC38A10Q9HBR0 1119 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 PDGFCQ9NRA1 345 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 POLR3EQ9NVU0 708 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 CLIP2Q9UDT6 1046 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 FEM1BQ9UK73 627 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 TNNQ9UQP3 1299 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 NOD1Q9Y239 953 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 NOP58Q9Y2X3 529 aaKnown RBP11.11□□□□□ -0.63
COL17A1-207ENST00000488320 Q9Y3F1 56 aa11.11□□□□□ -0.63
COL17A1-207ENST00000488320 TCRBV5S4A2TA0A5A2 114 aa11.1□□□□□ -0.63
COL17A1-207ENST00000488320 SOWAHBA6NEL2 793 aa11.1□□□□□ -0.63
COL17A1-207ENST00000488320 MBD4O95243 580 aa11.1□□□□□ -0.63
COL17A1-207ENST00000488320 OAZ1P54368 228 aa11.1□□□□□ -0.63
COL17A1-207ENST00000488320 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.1□□□□□ -0.63
COL17A1-207ENST00000488320 FBXO16Q8IX29 292 aaPredicted RBP11.1□□□□□ -0.63
COL17A1-207ENST00000488320 FAM133AQ8N9E0 248 aa11.1□□□□□ -0.63
COL17A1-207ENST00000488320 SLC4A4Q9Y6R1 1079 aa11.1□□□□□ -0.63
COL17A1-207ENST00000488320 LCHNA4D1U4 455 aa11.09□□□□□ -0.63
COL17A1-207ENST00000488320 ZNF316A6NFI3 1004 aaPredicted RBP11.09□□□□□ -0.63
COL17A1-207ENST00000488320 BAIAP3O94812 1187 aa11.09□□□□□ -0.63
COL17A1-207ENST00000488320 CHMP4BP1P59074 171 aa11.09□□□□□ -0.63
COL17A1-207ENST00000488320 IKQ13123 557 aaPredicted RBP11.09□□□□□ -0.63
COL17A1-207ENST00000488320 BFSP2Q13515 415 aa11.09□□□□□ -0.63
COL17A1-207ENST00000488320 PUS10Q3MIT2 529 aaKnown RBP11.09□□□□□ -0.63
COL17A1-207ENST00000488320 TMEM63BQ5T3F8 832 aa11.09□□□□□ -0.63
COL17A1-207ENST00000488320 TAPT1Q6NXT6 567 aa11.09□□□□□ -0.63
COL17A1-207ENST00000488320 EP400NLQ6ZTU2 488 aa11.09□□□□□ -0.63
COL17A1-207ENST00000488320 ERC1Q8IUD2 1116 aa11.09□□□□□ -0.63
COL17A1-207ENST00000488320 TMEM57Q8N5G2 664 aa11.09□□□□□ -0.63
COL17A1-207ENST00000488320 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.09□□□□□ -0.63
COL17A1-207ENST00000488320 MFSD14AQ96MC6 490 aa11.09□□□□□ -0.63
COL17A1-207ENST00000488320 TGS1Q96RS0 853 aaKnown RBP11.09□□□□□ -0.63
COL17A1-207ENST00000488320 MTG1Q9BT17 334 aaPredicted RBP11.09□□□□□ -0.63
COL17A1-207ENST00000488320 SUGCTQ9HAC7 445 aa11.09□□□□□ -0.63
COL17A1-207ENST00000488320 RNF146Q9NTX7 359 aa11.09□□□□□ -0.63
COL17A1-207ENST00000488320 NYAP2Q9P242 653 aa11.09□□□□□ -0.63
COL17A1-207ENST00000488320 COL4A4P53420 1690 aaPredicted RBP11.08□□□□□ -0.64
COL17A1-207ENST00000488320 GRXCR2A6NFK2 248 aa11.08□□□□□ -0.64
COL17A1-207ENST00000488320 PITPNM1O00562 1244 aa11.08□□□□□ -0.64
COL17A1-207ENST00000488320 FDX1P10109 184 aa11.08□□□□□ -0.64
COL17A1-207ENST00000488320 ALAS1P13196 640 aa11.08□□□□□ -0.64
COL17A1-207ENST00000488320 CPT1AP50416 773 aa11.08□□□□□ -0.64
COL17A1-207ENST00000488320 NBPF20Q3BBV1 942 aa11.08□□□□□ -0.64
COL17A1-207ENST00000488320 SLFNL1Q499Z3 407 aa11.08□□□□□ -0.64
COL17A1-207ENST00000488320 BRDTQ58F21 947 aaPredicted RBP11.08□□□□□ -0.64
COL17A1-207ENST00000488320 CTR9Q6PD62 1173 aa11.08□□□□□ -0.64
COL17A1-207ENST00000488320 TMCO2Q7Z6W1 182 aaPredicted RBP11.08□□□□□ -0.64
COL17A1-207ENST00000488320 OR6J1Q8NGC5 347 aa11.08□□□□□ -0.64
COL17A1-207ENST00000488320 PPP1R13LQ8WUF5 828 aa11.08□□□□□ -0.64
COL17A1-207ENST00000488320 TRERF1Q96PN7 1200 aa11.08□□□□□ -0.64
COL17A1-207ENST00000488320 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.08□□□□□ -0.64
COL17A1-207ENST00000488320 IL1RAPL2Q9NP60 686 aa11.08□□□□□ -0.64
COL17A1-207ENST00000488320 A1CFQ9NQ94 594 aaKnown RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms