RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 C6orf222P0C671 652 aaPredicted RBP14.46□□□□□ -0.09
SDC3-204ENST00000487984 SNHG28P0DPA3 235 aa14.46□□□□□ -0.09
SDC3-204ENST00000487984 PDE4AP27815 886 aa14.46□□□□□ -0.09
SDC3-204ENST00000487984 CST5P28325 142 aaPredicted RBP14.46□□□□□ -0.09
SDC3-204ENST00000487984 ZNF543Q08ER8 600 aa14.46□□□□□ -0.09
SDC3-204ENST00000487984 NSMFQ6X4W1 530 aa14.46□□□□□ -0.09
SDC3-204ENST00000487984 BADQ92934 168 aa14.46□□□□□ -0.09
SDC3-204ENST00000487984 ZKSCAN3Q9BRR0 538 aa14.46□□□□□ -0.09
SDC3-204ENST00000487984 DSCC1Q9BVC3 393 aa14.46□□□□□ -0.09
SDC3-204ENST00000487984 STARD7Q9NQZ5 370 aa14.46□□□□□ -0.09
SDC3-204ENST00000487984 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.45□□□□□ -0.1
SDC3-204ENST00000487984 KDM4AO75164 1064 aa14.45□□□□□ -0.1
SDC3-204ENST00000487984 CLTBP09497 229 aa14.45□□□□□ -0.1
SDC3-204ENST00000487984 GJA9P57773 515 aa14.45□□□□□ -0.1
SDC3-204ENST00000487984 NUP133Q8WUM0 1156 aa14.45□□□□□ -0.1
SDC3-204ENST00000487984 PURBQ96QR8 312 aaKnown RBP14.45□□□□□ -0.1
SDC3-204ENST00000487984 IL25Q9H293 177 aa14.45□□□□□ -0.1
SDC3-204ENST00000487984 SPC25Q9HBM1 224 aa14.45□□□□□ -0.1
SDC3-204ENST00000487984 LTBP2Q14767 1821 aa14.44□□□□□ -0.1
SDC3-204ENST00000487984 NFIBO00712 420 aa14.44□□□□□ -0.1
SDC3-204ENST00000487984 CTAGE5O15320 804 aa14.44□□□□□ -0.1
SDC3-204ENST00000487984 ASGR1P07306 291 aa14.44□□□□□ -0.1
SDC3-204ENST00000487984 GSPT1P15170 499 aaKnown RBP14.44□□□□□ -0.1
SDC3-204ENST00000487984 ITGB8P26012 769 aa14.44□□□□□ -0.1
SDC3-204ENST00000487984 NT5C2P49902 561 aa14.44□□□□□ -0.1
SDC3-204ENST00000487984 IRX6P78412 446 aaPredicted RBP14.44□□□□□ -0.1
SDC3-204ENST00000487984 TNFAIP2Q03169 654 aa14.44□□□□□ -0.1
SDC3-204ENST00000487984 Q7L0L9 218 aa14.44□□□□□ -0.1
SDC3-204ENST00000487984 ANKRD33Q7Z3H0 272 aa14.44□□□□□ -0.1
SDC3-204ENST00000487984 DGKHQ86XP1 1220 aa14.44□□□□□ -0.1
SDC3-204ENST00000487984 DEFB123Q8N688 67 aa14.44□□□□□ -0.1
SDC3-204ENST00000487984 PCSK9Q8NBP7 692 aaKnown RBP14.44□□□□□ -0.1
SDC3-204ENST00000487984 B4E1Z4 1266 aa14.43□□□□□ -0.1
SDC3-204ENST00000487984 KIAA0355O15063 1070 aa14.43□□□□□ -0.1
SDC3-204ENST00000487984 GOLGA8HP0CJ92 632 aa14.43□□□□□ -0.1
SDC3-204ENST00000487984 PTGS1P23219 599 aa14.43□□□□□ -0.1
SDC3-204ENST00000487984 NKX3-2P78367 333 aa14.43□□□□□ -0.1
SDC3-204ENST00000487984 BAATQ14032 418 aaPredicted RBP14.43□□□□□ -0.1
SDC3-204ENST00000487984 IMMTQ16891 758 aaKnown RBP14.43□□□□□ -0.1
SDC3-204ENST00000487984 GNASQ5JWF2 1037 aa14.43□□□□□ -0.1
SDC3-204ENST00000487984 C9orf50Q5SZB4 431 aa14.43□□□□□ -0.1
SDC3-204ENST00000487984 TTC22Q5TAA0 569 aa14.43□□□□□ -0.1
SDC3-204ENST00000487984 NOL8Q76FK4 1167 aaKnown RBP14.43□□□□□ -0.1
SDC3-204ENST00000487984 EEPD1Q7L9B9 569 aa14.43□□□□□ -0.1
SDC3-204ENST00000487984 IQCA1Q86XH1 822 aa14.43□□□□□ -0.1
SDC3-204ENST00000487984 FBXO16Q8IX29 292 aaPredicted RBP14.43□□□□□ -0.1
SDC3-204ENST00000487984 MORC4Q8TE76 937 aa14.43□□□□□ -0.1
SDC3-204ENST00000487984 CLEC4DQ8WXI8 215 aa14.43□□□□□ -0.1
SDC3-204ENST00000487984 GLT1D1Q96MS3 346 aa14.43□□□□□ -0.1
SDC3-204ENST00000487984 TOX2Q96NM4 488 aa14.43□□□□□ -0.1
SDC3-204ENST00000487984 PDGFCQ9NRA1 345 aa14.43□□□□□ -0.1
SDC3-204ENST00000487984 CTNNA3Q9UI47 895 aa14.43□□□□□ -0.1
SDC3-204ENST00000487984 GNEQ9Y223 722 aaKnown RBP14.43□□□□□ -0.1
SDC3-204ENST00000487984 ELP1O95163 1332 aa14.42□□□□□ -0.1
SDC3-204ENST00000487984 MCM3APO60318 1980 aa14.42□□□□□ -0.1
SDC3-204ENST00000487984 PTPDC1A2A3K4 754 aa14.42□□□□□ -0.1
SDC3-204ENST00000487984 DCDC2CA8MYV0 355 aa14.42□□□□□ -0.1
SDC3-204ENST00000487984 SMPD1P17405 629 aa14.42□□□□□ -0.1
SDC3-204ENST00000487984 BEX3Q00994 111 aa14.42□□□□□ -0.1
SDC3-204ENST00000487984 FAAP100Q0VG06 881 aa14.42□□□□□ -0.1
SDC3-204ENST00000487984 SHHQ15465 462 aa14.42□□□□□ -0.1
SDC3-204ENST00000487984 CCDC178Q5BJE1 867 aa14.42□□□□□ -0.1
SDC3-204ENST00000487984 GPATCH4Q5T3I0 446 aaKnown RBP14.42□□□□□ -0.1
SDC3-204ENST00000487984 TAPT1Q6NXT6 567 aa14.42□□□□□ -0.1
SDC3-204ENST00000487984 SLC30A10Q6XR72 485 aa14.42□□□□□ -0.1
SDC3-204ENST00000487984 TLK2Q86UE8 772 aa14.42□□□□□ -0.1
SDC3-204ENST00000487984 ENAHQ8N8S7 591 aaPredicted RBP14.42□□□□□ -0.1
SDC3-204ENST00000487984 PNMA1Q8ND90 353 aa14.42□□□□□ -0.1
SDC3-204ENST00000487984 ANKS1AQ92625 1134 aa14.42□□□□□ -0.1
SDC3-204ENST00000487984 ZSCAN10Q96SZ4 725 aaPredicted RBP14.42□□□□□ -0.1
SDC3-204ENST00000487984 CPVLQ9H3G5 476 aa14.42□□□□□ -0.1
SDC3-204ENST00000487984 TMEM39AQ9NV64 488 aa14.42□□□□□ -0.1
SDC3-204ENST00000487984 WDR19Q8NEZ3 1342 aa14.41□□□□□ -0.1
SDC3-204ENST00000487984 LAMA2P24043 3122 aaKnown RBP14.41□□□□□ -0.1
SDC3-204ENST00000487984 A0A0U1RQG5 324 aaPredicted RBP14.41□□□□□ -0.1
SDC3-204ENST00000487984 RAG1P15918 1043 aa14.41□□□□□ -0.1
SDC3-204ENST00000487984 CDK7P50613 346 aa14.41□□□□□ -0.1
SDC3-204ENST00000487984 ALDH5A1P51649 535 aaPredicted RBP14.41□□□□□ -0.1
SDC3-204ENST00000487984 TMEM63BQ5T3F8 832 aa14.41□□□□□ -0.1
SDC3-204ENST00000487984 VTI1AQ96AJ9 217 aa14.41□□□□□ -0.1
SDC3-204ENST00000487984 UBA5Q9GZZ9 404 aa14.41□□□□□ -0.1
SDC3-204ENST00000487984 KAT14Q9H8E8 782 aa14.41□□□□□ -0.1
SDC3-204ENST00000487984 VTA1Q9NP79 307 aa14.41□□□□□ -0.1
SDC3-204ENST00000487984 ZSWIM5Q9P217 1185 aa14.41□□□□□ -0.1
SDC3-204ENST00000487984 ADD3Q9UEY8 706 aaKnown RBP14.41□□□□□ -0.1
SDC3-204ENST00000487984 PNMA2Q9UL42 364 aa14.41□□□□□ -0.1
SDC3-204ENST00000487984 LAMA4Q16363 1823 aa14.41□□□□□ -0.1
SDC3-204ENST00000487984 TNKSO95271 1327 aa14.41□□□□□ -0.1
SDC3-204ENST00000487984 CALML3P27482 149 aa14.4□□□□□ -0.1
SDC3-204ENST00000487984 EPHB4P54760 987 aa14.4□□□□□ -0.1
SDC3-204ENST00000487984 FSCN1Q16658 493 aaKnown RBP14.4□□□□□ -0.1
SDC3-204ENST00000487984 IQSEC1Q6DN90 963 aa14.4□□□□□ -0.1
SDC3-204ENST00000487984 RNF207Q6ZRF8 634 aa14.4□□□□□ -0.1
SDC3-204ENST00000487984 KRT23Q9C075 422 aa14.4□□□□□ -0.1
SDC3-204ENST00000487984 AP5M1Q9H0R1 490 aa14.4□□□□□ -0.1
SDC3-204ENST00000487984 CNNM2Q9H8M5 875 aa14.4□□□□□ -0.1
SDC3-204ENST00000487984 MTMR10Q9NXD2 777 aa14.4□□□□□ -0.1
SDC3-204ENST00000487984 TBX21Q9UL17 535 aa14.4□□□□□ -0.1
SDC3-204ENST00000487984 LRRC37A2A6NM11 1700 aa14.4□□□□□ -0.1
SDC3-204ENST00000487984 MROH7Q68CQ1 1323 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms