RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 KIR2DL1P43626 348 aaPredicted RBP8.04□□□□□ -1.12
USP48-209ENST00000487880 KIR2DL2P43627 348 aaPredicted RBP8.04□□□□□ -1.12
USP48-209ENST00000487880 SEPHS1P49903 392 aa8.04□□□□□ -1.12
USP48-209ENST00000487880 MAP4K2Q12851 820 aa8.04□□□□□ -1.12
USP48-209ENST00000487880 TESK1Q15569 626 aa8.04□□□□□ -1.12
USP48-209ENST00000487880 SLC35F1Q5T1Q4 408 aa8.04□□□□□ -1.12
USP48-209ENST00000487880 FOXB2Q5VYV0 432 aa8.04□□□□□ -1.12
USP48-209ENST00000487880 JAZF1Q86VZ6 243 aa8.04□□□□□ -1.12
USP48-209ENST00000487880 TMEM145Q8NBT3 493 aa8.04□□□□□ -1.12
USP48-209ENST00000487880 KREMEN2Q8NCW0 462 aa8.04□□□□□ -1.12
USP48-209ENST00000487880 PDZD8Q8NEN9 1154 aa8.04□□□□□ -1.12
USP48-209ENST00000487880 FLAD1Q8NFF5 587 aa8.04□□□□□ -1.12
USP48-209ENST00000487880 FRS2Q8WU20 508 aa8.04□□□□□ -1.12
USP48-209ENST00000487880 SYTL4Q96C24 671 aaPredicted RBP8.04□□□□□ -1.12
USP48-209ENST00000487880 RNPC3Q96LT9 517 aaKnown RBP8.04□□□□□ -1.12
USP48-209ENST00000487880 ADGRE2Q9UHX3 823 aa8.04□□□□□ -1.12
USP48-209ENST00000487880 NOTOA8MTQ0 251 aa8.03□□□□□ -1.12
USP48-209ENST00000487880 HPXP02790 462 aa8.03□□□□□ -1.12
USP48-209ENST00000487880 HK2P52789 917 aa8.03□□□□□ -1.12
USP48-209ENST00000487880 ZC3H12BQ5HYM0 836 aaKnown RBP8.03□□□□□ -1.12
USP48-209ENST00000487880 DENND5AQ6IQ26 1287 aa8.03□□□□□ -1.12
USP48-209ENST00000487880 GIMAP6Q6P9H5 292 aa8.03□□□□□ -1.12
USP48-209ENST00000487880 SLCO6A1Q86UG4 719 aa8.03□□□□□ -1.12
USP48-209ENST00000487880 ANKS4BQ8N8V4 417 aa8.03□□□□□ -1.12
USP48-209ENST00000487880 SH3TC2Q8TF17 1288 aa8.03□□□□□ -1.12
USP48-209ENST00000487880 KRTAP9-2Q9BYQ4 174 aa8.03□□□□□ -1.12
USP48-209ENST00000487880 KANSL2Q9H9L4 492 aa8.03□□□□□ -1.12
USP48-209ENST00000487880 RC3H2Q9HBD1 1191 aaKnown RBP8.03□□□□□ -1.12
USP48-209ENST00000487880 TBX22Q9Y458 520 aa8.03□□□□□ -1.12
USP48-209ENST00000487880 PRODHO43272 600 aa8.02□□□□□ -1.13
USP48-209ENST00000487880 CHRNEQ04844 493 aa8.02□□□□□ -1.13
USP48-209ENST00000487880 SQSTM1Q13501 440 aa8.02□□□□□ -1.13
USP48-209ENST00000487880 NR0B2Q15466 257 aa8.02□□□□□ -1.13
USP48-209ENST00000487880 PRSS53Q2L4Q9 553 aa8.02□□□□□ -1.13
USP48-209ENST00000487880 ACBD5Q5T8D3 534 aaPredicted RBP8.02□□□□□ -1.13
USP48-209ENST00000487880 KSR1Q8IVT5 923 aa8.02□□□□□ -1.13
USP48-209ENST00000487880 KCTD13Q8WZ19 329 aa8.02□□□□□ -1.13
USP48-209ENST00000487880 EXOC2Q96KP1 924 aa8.02□□□□□ -1.13
USP48-209ENST00000487880 SLC26A8Q96RN1 970 aa8.02□□□□□ -1.13
USP48-209ENST00000487880 GPRC5CQ9NQ84 441 aa8.02□□□□□ -1.13
USP48-209ENST00000487880 PTCH2Q9Y6C5 1203 aa8.02□□□□□ -1.13
USP48-209ENST00000487880 FITM1A5D6W6 292 aa8.01□□□□□ -1.13
USP48-209ENST00000487880 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.01□□□□□ -1.13
USP48-209ENST00000487880 ARNTLO00327 626 aa8.01□□□□□ -1.13
USP48-209ENST00000487880 USP2O75604 605 aaPredicted RBP8.01□□□□□ -1.13
USP48-209ENST00000487880 PLS3P13797 630 aa8.01□□□□□ -1.13
USP48-209ENST00000487880 ECI1P42126 302 aa8.01□□□□□ -1.13
USP48-209ENST00000487880 ERVFC1P60507 584 aa8.01□□□□□ -1.13
USP48-209ENST00000487880 TMEM67Q5HYA8 995 aa8.01□□□□□ -1.13
USP48-209ENST00000487880 NSMFQ6X4W1 530 aa8.01□□□□□ -1.13
USP48-209ENST00000487880 NBPF11Q86T75 865 aa8.01□□□□□ -1.13
USP48-209ENST00000487880 SCUBE1Q8IWY4 988 aa8.01□□□□□ -1.13
USP48-209ENST00000487880 NAT16Q8N8M0 369 aa8.01□□□□□ -1.13
USP48-209ENST00000487880 KISS1RQ969F8 398 aaPredicted RBP8.01□□□□□ -1.13
USP48-209ENST00000487880 MRPL42Q9Y6G3 142 aaKnown RBP8.01□□□□□ -1.13
USP48-209ENST00000487880 TRBV23OR9-2A0A075B6M9 112 aa8□□□□□ -1.13
USP48-209ENST00000487880 TBC1D8O95759 1140 aa8□□□□□ -1.13
USP48-209ENST00000487880 EFEMP2O95967 443 aa8□□□□□ -1.13
USP48-209ENST00000487880 KCNJ6P48051 423 aa8□□□□□ -1.13
USP48-209ENST00000487880 FAM209AQ5JX71 171 aa8□□□□□ -1.13
USP48-209ENST00000487880 HLA-DQA1Q5Y7H0 255 aa8□□□□□ -1.13
USP48-209ENST00000487880 E4F1Q66K89 784 aaPredicted RBP8□□□□□ -1.13
USP48-209ENST00000487880 CCDC103Q8IW40 242 aa8□□□□□ -1.13
USP48-209ENST00000487880 OXR1Q8N573 874 aa8□□□□□ -1.13
USP48-209ENST00000487880 ZSWIM2Q8NEG5 633 aa8□□□□□ -1.13
USP48-209ENST00000487880 MMP19Q99542 508 aa8□□□□□ -1.13
USP48-209ENST00000487880 CWC22Q9HCG8 908 aaKnown RBP8□□□□□ -1.13
USP48-209ENST00000487880 TMEM260Q9NX78 707 aa8□□□□□ -1.13
USP48-209ENST00000487880 CLEC1BQ9P126 229 aa8□□□□□ -1.13
USP48-209ENST00000487880 TRBV23-1A0A0A0MS06 115 aa7.99□□□□□ -1.13
USP48-209ENST00000487880 NPHP3-ACAD11A0A0J9YXS1 232 aa7.99□□□□□ -1.13
USP48-209ENST00000487880 A0A1W2PQ45 241 aaPredicted RBP7.99□□□□□ -1.13
USP48-209ENST00000487880 A0A1W2PQY0 241 aa7.99□□□□□ -1.13
USP48-209ENST00000487880 NRDCO43847 1150 aa7.99□□□□□ -1.13
USP48-209ENST00000487880 PAMP19021 973 aa7.99□□□□□ -1.13
USP48-209ENST00000487880 RTP1P59025 263 aa7.99□□□□□ -1.13
USP48-209ENST00000487880 NTRK3Q16288 839 aa7.99□□□□□ -1.13
USP48-209ENST00000487880 TIGD5Q53EQ6 642 aa7.99□□□□□ -1.13
USP48-209ENST00000487880 MBLAC2Q68D91 279 aa7.99□□□□□ -1.13
USP48-209ENST00000487880 ATG4DQ86TL0 474 aaPredicted RBP7.99□□□□□ -1.13
USP48-209ENST00000487880 SPPL2CQ8IUH8 684 aa7.99□□□□□ -1.13
USP48-209ENST00000487880 NLGN1Q8N2Q7 840 aa7.99□□□□□ -1.13
USP48-209ENST00000487880 JMJD8Q96S16 334 aa7.99□□□□□ -1.13
USP48-209ENST00000487880 TMEFF2Q9UIK5 374 aaPredicted RBP7.99□□□□□ -1.13
USP48-209ENST00000487880 MRPS23Q9Y3D9 190 aaKnown RBP7.99□□□□□ -1.13
USP48-209ENST00000487880 NPFFR2Q9Y5X5 522 aa7.99□□□□□ -1.13
USP48-209ENST00000487880 TLDC2A0PJX2 215 aa7.98□□□□□ -1.13
USP48-209ENST00000487880 SUMO1P63165 101 aaKnown RBP7.98□□□□□ -1.13
USP48-209ENST00000487880 HSF5Q4G112 596 aaPredicted RBP7.98□□□□□ -1.13
USP48-209ENST00000487880 CEP128Q6ZU80 1094 aa7.98□□□□□ -1.13
USP48-209ENST00000487880 PPIL6Q8IXY8 311 aa7.98□□□□□ -1.13
USP48-209ENST00000487880 CDC6Q99741 560 aa7.98□□□□□ -1.13
USP48-209ENST00000487880 DHRS4Q9BTZ2 278 aa7.98□□□□□ -1.13
USP48-209ENST00000487880 KRTAP9-6A0A140TA67 174 aa7.97□□□□□ -1.13
USP48-209ENST00000487880 MEFVO15553 781 aaPredicted RBP7.97□□□□□ -1.13
USP48-209ENST00000487880 C6orf222P0C671 652 aaPredicted RBP7.97□□□□□ -1.13
USP48-209ENST00000487880 ITGB5P18084 799 aa7.97□□□□□ -1.13
USP48-209ENST00000487880 L1CAMP32004 1257 aa7.97□□□□□ -1.13
USP48-209ENST00000487880 KCNAB2Q13303 367 aa7.97□□□□□ -1.13
USP48-209ENST00000487880 IQCEQ6IPM2 695 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms