RNA–Protein interactions for RNA: ENST00000487461.1

VPS16-208, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 634 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-208ENST00000487461 NKX3-2P78367 333 aa14.4□□□□□ -0.1
VPS16-208ENST00000487461 TNFAIP2Q03169 654 aa14.4□□□□□ -0.1
VPS16-208ENST00000487461 AAMPQ13685 434 aa14.4□□□□□ -0.1
VPS16-208ENST00000487461 CCDC96Q2M329 555 aa14.4□□□□□ -0.1
VPS16-208ENST00000487461 BTNL9Q6UXG8 535 aa14.4□□□□□ -0.1
VPS16-208ENST00000487461 PLEKHM2Q8IWE5 1019 aa14.4□□□□□ -0.1
VPS16-208ENST00000487461 VTI1AQ96AJ9 217 aa14.4□□□□□ -0.1
VPS16-208ENST00000487461 GLT1D1Q96MS3 346 aa14.4□□□□□ -0.1
VPS16-208ENST00000487461 YTHDC1Q96MU7 727 aaKnown RBP14.4□□□□□ -0.1
VPS16-208ENST00000487461 PURBQ96QR8 312 aaKnown RBP14.4□□□□□ -0.1
VPS16-208ENST00000487461 RANBP17Q9H2T7 1088 aaKnown RBP14.4□□□□□ -0.1
VPS16-208ENST00000487461 RWDD1Q9H446 243 aaPredicted RBP14.4□□□□□ -0.1
VPS16-208ENST00000487461 GPCPD1Q9NPB8 672 aa14.4□□□□□ -0.1
VPS16-208ENST00000487461 CYP39A1Q9NYL5 469 aa14.4□□□□□ -0.1
VPS16-208ENST00000487461 CCPG1Q9ULG6 757 aa14.4□□□□□ -0.1
VPS16-208ENST00000487461 MCM3APO60318 1980 aa14.4□□□□□ -0.1
VPS16-208ENST00000487461 CCDC171Q6TFL3 1326 aa14.4□□□□□ -0.1
VPS16-208ENST00000487461 ICAM1P05362 532 aa14.39□□□□□ -0.11
VPS16-208ENST00000487461 SDSP20132 328 aa14.39□□□□□ -0.11
VPS16-208ENST00000487461 PTGS1P23219 599 aa14.39□□□□□ -0.11
VPS16-208ENST00000487461 BEX3Q00994 111 aa14.39□□□□□ -0.11
VPS16-208ENST00000487461 SYDE2Q5VT97 1194 aa14.39□□□□□ -0.11
VPS16-208ENST00000487461 NOL8Q76FK4 1167 aaKnown RBP14.39□□□□□ -0.11
VPS16-208ENST00000487461 CHD1LQ86WJ1 897 aa14.39□□□□□ -0.11
VPS16-208ENST00000487461 PDGFCQ9NRA1 345 aa14.39□□□□□ -0.11
VPS16-208ENST00000487461 GNEQ9Y223 722 aaKnown RBP14.39□□□□□ -0.11
VPS16-208ENST00000487461 ZMYM6O95789 1325 aa14.39□□□□□ -0.11
VPS16-208ENST00000487461 FRMPD2Q68DX3 1309 aaPredicted RBP14.39□□□□□ -0.11
VPS16-208ENST00000487461 ARVCFO00192 962 aa14.38□□□□□ -0.11
VPS16-208ENST00000487461 TIMP1P01033 207 aa14.38□□□□□ -0.11
VPS16-208ENST00000487461 SMPD1P17405 629 aa14.38□□□□□ -0.11
VPS16-208ENST00000487461 SMAD3P84022 425 aaKnown RBP14.38□□□□□ -0.11
VPS16-208ENST00000487461 FPGSQ05932 587 aa14.38□□□□□ -0.11
VPS16-208ENST00000487461 AKNAD1Q5T1N1 836 aa14.38□□□□□ -0.11
VPS16-208ENST00000487461 TMEM63BQ5T3F8 832 aa14.38□□□□□ -0.11
VPS16-208ENST00000487461 ZNF697Q5TEC3 545 aa14.38□□□□□ -0.11
VPS16-208ENST00000487461 TAPT1Q6NXT6 567 aa14.38□□□□□ -0.11
VPS16-208ENST00000487461 NSMFQ6X4W1 530 aa14.38□□□□□ -0.11
VPS16-208ENST00000487461 MFSD6Q6ZSS7 791 aa14.38□□□□□ -0.11
VPS16-208ENST00000487461 EEPD1Q7L9B9 569 aa14.38□□□□□ -0.11
VPS16-208ENST00000487461 TBC1D10CQ8IV04 446 aa14.38□□□□□ -0.11
VPS16-208ENST00000487461 EXOC6Q8TAG9 804 aa14.38□□□□□ -0.11
VPS16-208ENST00000487461 SEMA6BQ9H3T3 888 aa14.38□□□□□ -0.11
VPS16-208ENST00000487461 OSBPL3Q9H4L5 887 aa14.38□□□□□ -0.11
VPS16-208ENST00000487461 TBX21Q9UL17 535 aa14.38□□□□□ -0.11
VPS16-208ENST00000487461 A0A0U1RQG5 324 aaPredicted RBP14.37□□□□□ -0.11
VPS16-208ENST00000487461 DYNC1LI2O43237 492 aaPredicted RBP14.37□□□□□ -0.11
VPS16-208ENST00000487461 PDHBP11177 359 aa14.37□□□□□ -0.11
VPS16-208ENST00000487461 NUCB1Q02818 461 aa14.37□□□□□ -0.11
VPS16-208ENST00000487461 BAATQ14032 418 aaPredicted RBP14.37□□□□□ -0.11
VPS16-208ENST00000487461 IQSEC1Q6DN90 963 aa14.37□□□□□ -0.11
VPS16-208ENST00000487461 MORC4Q8TE76 937 aa14.37□□□□□ -0.11
VPS16-208ENST00000487461 RNPC3Q96LT9 517 aaKnown RBP14.37□□□□□ -0.11
VPS16-208ENST00000487461 TTC14Q96N46 770 aa14.37□□□□□ -0.11
VPS16-208ENST00000487461 NFIBO00712 420 aa14.36□□□□□ -0.11
VPS16-208ENST00000487461 PCP11498 1178 aaKnown RBP14.36□□□□□ -0.11
VPS16-208ENST00000487461 ZNF543Q08ER8 600 aa14.36□□□□□ -0.11
VPS16-208ENST00000487461 MFSD5Q6N075 450 aa14.36□□□□□ -0.11
VPS16-208ENST00000487461 CXCL17Q6UXB2 119 aa14.36□□□□□ -0.11
VPS16-208ENST00000487461 C16orf59Q7L2K0 433 aa14.36□□□□□ -0.11
VPS16-208ENST00000487461 FBXO16Q8IX29 292 aaPredicted RBP14.36□□□□□ -0.11
VPS16-208ENST00000487461 FAM126BQ8IXS8 530 aa14.36□□□□□ -0.11
VPS16-208ENST00000487461 CLEC4DQ8WXI8 215 aa14.36□□□□□ -0.11
VPS16-208ENST00000487461 CDX2Q99626 313 aaPredicted RBP14.36□□□□□ -0.11
VPS16-208ENST00000487461 AP5M1Q9H0R1 490 aa14.36□□□□□ -0.11
VPS16-208ENST00000487461 TTYH1Q9H313 450 aaPredicted RBP14.36□□□□□ -0.11
VPS16-208ENST00000487461 MROH7Q68CQ1 1323 aa14.36□□□□□ -0.11
VPS16-208ENST00000487461 A0A0C4DFX4 3053 aa14.35□□□□□ -0.11
VPS16-208ENST00000487461 LAMA2P24043 3122 aaKnown RBP14.35□□□□□ -0.11
VPS16-208ENST00000487461 CD4P01730 458 aa14.35□□□□□ -0.11
VPS16-208ENST00000487461 SNHG28P0DPA3 235 aa14.35□□□□□ -0.11
VPS16-208ENST00000487461 MFAP1P55081 439 aaKnown RBP14.35□□□□□ -0.11
VPS16-208ENST00000487461 FSCN1Q16658 493 aaKnown RBP14.35□□□□□ -0.11
VPS16-208ENST00000487461 CWC27Q6UX04 472 aaKnown RBP14.35□□□□□ -0.11
VPS16-208ENST00000487461 KIAA1211Q6ZU35 1233 aa14.35□□□□□ -0.11
VPS16-208ENST00000487461 TLK2Q86UE8 772 aa14.35□□□□□ -0.11
VPS16-208ENST00000487461 SLC43A3Q8NBI5 491 aa14.35□□□□□ -0.11
VPS16-208ENST00000487461 ZKSCAN3Q9BRR0 538 aa14.35□□□□□ -0.11
VPS16-208ENST00000487461 RNF41Q9H4P4 317 aaPredicted RBP14.35□□□□□ -0.11
VPS16-208ENST00000487461 VTA1Q9NP79 307 aa14.35□□□□□ -0.11
VPS16-208ENST00000487461 GRIN2DO15399 1336 aa14.35□□□□□ -0.11
VPS16-208ENST00000487461 PTPDC1A2A3K4 754 aa14.34□□□□□ -0.11
VPS16-208ENST00000487461 ZNF213O14771 459 aa14.34□□□□□ -0.11
VPS16-208ENST00000487461 CABYRO75952 493 aa14.34□□□□□ -0.11
VPS16-208ENST00000487461 ALDH5A1P51649 535 aaPredicted RBP14.34□□□□□ -0.11
VPS16-208ENST00000487461 ESR2Q92731 530 aa14.34□□□□□ -0.11
VPS16-208ENST00000487461 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.34□□□□□ -0.114e-7■■■□□ 17.3
VPS16-208ENST00000487461 ADD3Q9UEY8 706 aaKnown RBP14.34□□□□□ -0.11
VPS16-208ENST00000487461 Q9Y3F1 56 aa14.34□□□□□ -0.11
VPS16-208ENST00000487461 NEDD4P46934 1319 aa14.34□□□□□ -0.11
VPS16-208ENST00000487461 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.33□□□□□ -0.12
VPS16-208ENST00000487461 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.33□□□□□ -0.12
VPS16-208ENST00000487461 TLR3O15455 904 aaKnown RBP14.33□□□□□ -0.12
VPS16-208ENST00000487461 ZEB2O60315 1214 aa14.33□□□□□ -0.12
VPS16-208ENST00000487461 GOLGA8HP0CJ92 632 aa14.33□□□□□ -0.12
VPS16-208ENST00000487461 CSF2RAP15509 400 aa14.33□□□□□ -0.12
VPS16-208ENST00000487461 CALML3P27482 149 aa14.33□□□□□ -0.12
VPS16-208ENST00000487461 PPIGQ13427 754 aaKnown RBP eCLIP14.33□□□□□ -0.122e-6■■■■□ 25.4
VPS16-208ENST00000487461 ITGA7Q13683 1181 aa14.33□□□□□ -0.12
VPS16-208ENST00000487461 DUSP28Q4G0W2 176 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms