RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 TANGO6Q9C0B7 1094 aa16.23■□□□□ 0.19
CUX1-209ENST00000487284 TSPY26PQ9H489 355 aa16.23■□□□□ 0.19
CUX1-209ENST00000487284 PCDHB6Q9Y5E3 794 aa16.23■□□□□ 0.19
CUX1-209ENST00000487284 TLL2Q9Y6L7 1015 aa16.23■□□□□ 0.19
CUX1-209ENST00000487284 RLFQ13129 1914 aa16.23■□□□□ 0.19
CUX1-209ENST00000487284 ESYT2A0FGR8 921 aa16.22■□□□□ 0.19
CUX1-209ENST00000487284 TMEM88BA6NKF7 163 aa16.22■□□□□ 0.19
CUX1-209ENST00000487284 ADAMTS3O15072 1205 aa16.22■□□□□ 0.19
CUX1-209ENST00000487284 CUTAO60888 179 aa16.22■□□□□ 0.19
CUX1-209ENST00000487284 CMA1P23946 247 aa16.22■□□□□ 0.19
CUX1-209ENST00000487284 MARCKSP29966 332 aaPredicted RBP16.22■□□□□ 0.19
CUX1-209ENST00000487284 TRAPPC10P48553 1259 aa16.22■□□□□ 0.19
CUX1-209ENST00000487284 SYDE2Q5VT97 1194 aa16.22■□□□□ 0.19
CUX1-209ENST00000487284 GADL1Q6ZQY3 521 aa16.22■□□□□ 0.19
CUX1-209ENST00000487284 FMR1NBQ8N0W7 255 aaPredicted RBP16.22■□□□□ 0.19
CUX1-209ENST00000487284 FUCA2Q9BTY2 467 aa16.22■□□□□ 0.19
CUX1-209ENST00000487284 ZMYND12Q9H0C1 365 aa16.22■□□□□ 0.19
CUX1-209ENST00000487284 TNMDQ9H2S6 317 aa16.22■□□□□ 0.19
CUX1-209ENST00000487284 JMJD4Q9H9V9 463 aa16.22■□□□□ 0.19
CUX1-209ENST00000487284 CEP131Q9UPN4 1083 aa16.22■□□□□ 0.19
CUX1-209ENST00000487284 FAM237AA0A1B0GTK4 181 aa16.21■□□□□ 0.19
CUX1-209ENST00000487284 BMP15O95972 392 aa16.21■□□□□ 0.19
CUX1-209ENST00000487284 ZNF157P51786 506 aaPredicted RBP16.21■□□□□ 0.19
CUX1-209ENST00000487284 MOGSQ13724 837 aa16.21■□□□□ 0.19
CUX1-209ENST00000487284 NOM1Q5C9Z4 860 aaKnown RBP16.21■□□□□ 0.19
CUX1-209ENST00000487284 TREML2Q5T2D2 321 aa16.21■□□□□ 0.19
CUX1-209ENST00000487284 SPRYD7Q5W111 196 aa16.21■□□□□ 0.19
CUX1-209ENST00000487284 RGMBQ6NW40 437 aa16.21■□□□□ 0.19
CUX1-209ENST00000487284 SAMD1Q6SPF0 538 aaPredicted RBP16.21■□□□□ 0.19
CUX1-209ENST00000487284 RASAL3Q86YV0 1011 aa16.21■□□□□ 0.19
CUX1-209ENST00000487284 MTMR8Q96EF0 704 aa16.21■□□□□ 0.19
CUX1-209ENST00000487284 FEM1BQ9UK73 627 aa16.21■□□□□ 0.19
CUX1-209ENST00000487284 PRR12Q9ULL5 1215 aa16.21■□□□□ 0.19
CUX1-209ENST00000487284 ABT1Q9ULW3 272 aaKnown RBP16.21■□□□□ 0.19
CUX1-209ENST00000487284 MYH7BA7E2Y1 1941 aa16.21■□□□□ 0.19
CUX1-209ENST00000487284 PLA2G6O60733 806 aa16.21■□□□□ 0.18
CUX1-209ENST00000487284 ZBTB48P10074 688 aaPredicted RBP16.21■□□□□ 0.18
CUX1-209ENST00000487284 NAPAP54920 295 aa16.21■□□□□ 0.18
CUX1-209ENST00000487284 SNAPC2Q13487 334 aa16.21■□□□□ 0.18
CUX1-209ENST00000487284 FAM160B2Q86V87 743 aa16.21■□□□□ 0.18
CUX1-209ENST00000487284 PROCA1Q8NCQ7 364 aaPredicted RBP16.21■□□□□ 0.18
CUX1-209ENST00000487284 CHURC1Q8WUH1 139 aa16.21■□□□□ 0.18
CUX1-209ENST00000487284 KIFC2Q96AC6 838 aa16.21■□□□□ 0.18
CUX1-209ENST00000487284 RBSNQ9H1K0 784 aa16.21■□□□□ 0.18
CUX1-209ENST00000487284 FBXO2Q9UK22 296 aaPredicted RBP16.21■□□□□ 0.18
CUX1-209ENST00000487284 CTAGE5O15320 804 aa16.2■□□□□ 0.18
CUX1-209ENST00000487284 KINO60870 393 aaKnown RBP16.2■□□□□ 0.18
CUX1-209ENST00000487284 FLOT1O75955 427 aa16.2■□□□□ 0.18
CUX1-209ENST00000487284 PTPREP23469 700 aa16.2■□□□□ 0.18
CUX1-209ENST00000487284 NDUFA8P51970 172 aa16.2■□□□□ 0.18
CUX1-209ENST00000487284 SNAP25P60880 206 aa16.2■□□□□ 0.18
CUX1-209ENST00000487284 TTC38Q5R3I4 469 aa16.2■□□□□ 0.18
CUX1-209ENST00000487284 PPP1R18Q6NYC8 613 aa16.2■□□□□ 0.18
CUX1-209ENST00000487284 KRI1Q8N9T8 703 aaKnown RBP16.2■□□□□ 0.18
CUX1-209ENST00000487284 MS4A4AQ96JQ5 239 aa16.2■□□□□ 0.18
CUX1-209ENST00000487284 SLF1Q9BQI6 1058 aa16.2■□□□□ 0.18
CUX1-209ENST00000487284 COL11A1P12107 1806 aaPredicted RBP16.19■□□□□ 0.18
CUX1-209ENST00000487284 PNMA6FA0A0J9YX94 578 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 A0A1B0GVL5 298 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 USP17L15C9J2P7 530 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 USP17L13C9JLJ4 530 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 USP17L11C9JVI0 530 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 USP17L18D6R9N7 530 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 USP17L22D6RA61 530 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 USP17L17D6RBQ6 530 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 USP17L19D6RCP7 530 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 USP17L20D6RJB6 530 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 GTF2A2P52657 109 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 USP17L24Q0WX57 530 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 CAMK4Q16566 473 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 RESP18Q5W5W9 173 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 SHC4Q6S5L8 630 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 CATSPERGQ6ZRH7 1159 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 PIK3AP1Q6ZUJ8 805 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 C6orf50Q9HD87 102 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 PCDHA6Q9UN73 950 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 HPSEQ9Y251 543 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 PCDHA8Q9Y5H6 950 aa16.19■□□□□ 0.18
CUX1-209ENST00000487284 CCL15-CCL14A0A0B4J2E2 113 aa16.18■□□□□ 0.18
CUX1-209ENST00000487284 WNT7AO00755 349 aa16.18■□□□□ 0.18
CUX1-209ENST00000487284 SLC10A3P09131 477 aa16.18■□□□□ 0.18
CUX1-209ENST00000487284 PFKFB1P16118 471 aa16.18■□□□□ 0.18
CUX1-209ENST00000487284 GNA11P29992 359 aa16.18■□□□□ 0.18
CUX1-209ENST00000487284 CDC37Q16543 378 aaPredicted RBP16.18■□□□□ 0.18
CUX1-209ENST00000487284 CCL15Q16663 113 aa16.18■□□□□ 0.18
CUX1-209ENST00000487284 QRICH1Q2TAL8 776 aa16.18■□□□□ 0.18
CUX1-209ENST00000487284 FASTKD5Q7L8L6 764 aaKnown RBP16.18■□□□□ 0.18
CUX1-209ENST00000487284 ZNF579Q8NAF0 562 aaKnown RBP16.18■□□□□ 0.18
CUX1-209ENST00000487284 PRPF38AQ8NAV1 312 aaKnown RBP16.18■□□□□ 0.18
CUX1-209ENST00000487284 PPP1R9AQ9ULJ8 1098 aa16.18■□□□□ 0.18
CUX1-209ENST00000487284 AGTPBP1Q9UPW5 1226 aa16.18■□□□□ 0.18
CUX1-209ENST00000487284 SRPRBQ9Y5M8 271 aaKnown RBP16.18■□□□□ 0.18
CUX1-209ENST00000487284 CCDC194A0A1B0GVG4 234 aa16.17■□□□□ 0.18
CUX1-209ENST00000487284 SMCO2A6NFE2 343 aa16.17■□□□□ 0.18
CUX1-209ENST00000487284 ZBTB5O15062 677 aa16.17■□□□□ 0.18
CUX1-209ENST00000487284 PPP1R11O60927 126 aaPredicted RBP16.17■□□□□ 0.18
CUX1-209ENST00000487284 CETPP11597 493 aa16.17■□□□□ 0.18
CUX1-209ENST00000487284 ATP2B1P20020 1258 aa16.17■□□□□ 0.18
CUX1-209ENST00000487284 APLP1P51693 650 aa16.17■□□□□ 0.18
CUX1-209ENST00000487284 GPAT2Q6NUI2 795 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms