RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 TSKSQ9UJT2 592 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 CAPN11Q9UMQ6 739 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 DUSP10Q9Y6W6 482 aa6.91□□□□□ -1.3
VPS13D-209ENST00000487188 WDR19Q8NEZ3 1342 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 NALCNQ8IZF0 1738 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 UBE2Q2LH0YL09 131 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 RANBP6O60518 1105 aaKnown RBP6.9□□□□□ -1.3
VPS13D-209ENST00000487188 RWDD2BP57060 319 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 ZBED6P86452 979 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 DPYDQ12882 1025 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 CCDC57Q2TAC2 916 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 KRT26Q7Z3Y9 468 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 CSGALNACT2Q8N6G5 542 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 CCHCR1Q8TD31 782 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 LMBR1Q8WVP7 490 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 ZNF594Q96JF6 807 aaPredicted RBP6.9□□□□□ -1.3
VPS13D-209ENST00000487188 ZKSCAN3Q9BRR0 538 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 NOC4LQ9BVI4 516 aaKnown RBP6.9□□□□□ -1.3
VPS13D-209ENST00000487188 NSRP1Q9H0G5 558 aaKnown RBP6.9□□□□□ -1.3
VPS13D-209ENST00000487188 CCDC113Q9H0I3 377 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 MMRN2Q9H8L6 949 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 RBM12Q9NTZ6 932 aaKnown RBP6.9□□□□□ -1.3
VPS13D-209ENST00000487188 IRAK4Q9NWZ3 460 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 GGA2Q9UJY4 613 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 GDAQ9Y2T3 454 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 ZNF330Q9Y3S2 320 aaPredicted RBP6.9□□□□□ -1.3
VPS13D-209ENST00000487188 TRIM49BA6NDI0 452 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 EYA2O00167 538 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 ATP6V1G2O95670 118 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 RPN1P04843 607 aaKnown RBP6.9□□□□□ -1.3
VPS13D-209ENST00000487188 NEFHP12036 1026 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 EEF1GP26641 437 aaKnown RBP6.9□□□□□ -1.3
VPS13D-209ENST00000487188 LACTBP83111 547 aaPredicted RBP6.9□□□□□ -1.3
VPS13D-209ENST00000487188 SLMAPQ14BN4 828 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 LRRC59Q96AG4 307 aaKnown RBP6.9□□□□□ -1.3
VPS13D-209ENST00000487188 ETAA1Q9NY74 926 aa6.9□□□□□ -1.3
VPS13D-209ENST00000487188 NOVA2Q9UNW9 492 aaKnown RBP6.9□□□□□ -1.3
VPS13D-209ENST00000487188 STK36Q9NRP7 1315 aa6.9□□□□□ -1.31
VPS13D-209ENST00000487188 SNUPNO95149 360 aaKnown RBP6.9□□□□□ -1.31
VPS13D-209ENST00000487188 TMOD1P28289 359 aa6.9□□□□□ -1.31
VPS13D-209ENST00000487188 ZAP70P43403 619 aa6.9□□□□□ -1.31
VPS13D-209ENST00000487188 TOB1P50616 345 aaPredicted RBP6.9□□□□□ -1.31
VPS13D-209ENST00000487188 FAM133BQ5BKY9 247 aaKnown RBP6.9□□□□□ -1.31
VPS13D-209ENST00000487188 TTC38Q5R3I4 469 aa6.9□□□□□ -1.31
VPS13D-209ENST00000487188 ZNF658Q5TYW1 1059 aaPredicted RBP6.9□□□□□ -1.31
VPS13D-209ENST00000487188 TBC1D10CQ8IV04 446 aa6.9□□□□□ -1.31
VPS13D-209ENST00000487188 DYDC1Q8WWB3 177 aa6.9□□□□□ -1.31
VPS13D-209ENST00000487188 EEF2KMTQ96G04 330 aa6.9□□□□□ -1.31
VPS13D-209ENST00000487188 DNAJC7Q99615 494 aa6.9□□□□□ -1.31
VPS13D-209ENST00000487188 PUS7LQ9H0K6 701 aaKnown RBP6.9□□□□□ -1.31
VPS13D-209ENST00000487188 TRPC6Q9Y210 931 aa6.9□□□□□ -1.31
VPS13D-209ENST00000487188 PCDHA13Q9Y5I0 950 aa6.9□□□□□ -1.31
VPS13D-209ENST00000487188 CAPN6Q9Y6Q1 641 aa6.9□□□□□ -1.31
VPS13D-209ENST00000487188 WDR17Q8IZU2 1322 aa6.9□□□□□ -1.31
VPS13D-209ENST00000487188 CEMIPQ8WUJ3 1361 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 AKAP12Q02952 1782 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 A0A1W2PQC6 194 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 ZNF233A6NK53 670 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 AP1G2O75843 785 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 LUC7L3O95232 432 aaKnown RBP6.89□□□□□ -1.31
VPS13D-209ENST00000487188 VIMP08670 466 aaKnown RBP6.89□□□□□ -1.31
VPS13D-209ENST00000487188 IFNAR1P17181 557 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 RFX5P48382 616 aaPredicted RBP6.89□□□□□ -1.31
VPS13D-209ENST00000487188 PPP2R2AP63151 447 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 ENOX2Q16206 610 aaKnown RBP6.89□□□□□ -1.31
VPS13D-209ENST00000487188 CREG2Q8IUH2 290 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 CCDC155Q8N6L0 562 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 OXER1Q8TDS5 423 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 TUBGCP2Q9BSJ2 902 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 GOPCQ9HD26 462 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 STRN4Q9NRL3 753 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 RGPD1P0DJD0 1748 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 TMEM94Q12767 1356 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 ROBO2Q9HCK4 1378 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 LAMA4Q16363 1823 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 FAM153BP0C7A2 387 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 GUCY1A2P33402 732 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 KIF11P52732 1056 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 MTMR3Q13615 1198 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 KCNB1Q14721 858 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 FAM153CQ494X1 144 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 ACCSLQ4AC99 568 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 LRRC24Q50LG9 513 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 TRIM68Q6AZZ1 485 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 MFSD6Q6ZSS7 791 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 SPDYE1Q8NFV5 336 aaPredicted RBP6.89□□□□□ -1.31
VPS13D-209ENST00000487188 MAGEC3Q8TD91 643 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 FAM167BQ9BTA0 163 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 PAGR1Q9BTK6 254 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 SENP2Q9HC62 589 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 AGPAT5Q9NUQ2 364 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 FAM153AQ9UHL3 310 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 STK38LQ9Y2H1 464 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 ROBO1Q9Y6N7 1651 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 RCCD1A6NED2 376 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 SMIM23A6NLE4 172 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 PHF20L1A8MW92 1017 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 CTNND1O60716 968 aaKnown RBP6.89□□□□□ -1.31
VPS13D-209ENST00000487188 DIAPH2O60879 1101 aa6.89□□□□□ -1.31
VPS13D-209ENST00000487188 ADCY2Q08462 1091 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms