RNA–Protein interactions for RNA: ENST00000485397.1

COL27A1-205, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 5

Gene COL27A1, Length 463 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-205ENST00000485397 ARVCFO00192 962 aa22.73■■□□□ 1.23
COL27A1-205ENST00000485397 TIMP1P01033 207 aa22.73■■□□□ 1.23
COL27A1-205ENST00000485397 SLC16A2P36021 539 aa22.73■■□□□ 1.23
COL27A1-205ENST00000485397 DCAF4Q8WV16 495 aa22.73■■□□□ 1.23
COL27A1-205ENST00000485397 PURBQ96QR8 312 aaKnown RBP22.73■■□□□ 1.23
COL27A1-205ENST00000485397 CYP39A1Q9NYL5 469 aa22.73■■□□□ 1.23
COL27A1-205ENST00000485397 CCPG1Q9ULG6 757 aa22.73■■□□□ 1.23
COL27A1-205ENST00000485397 A0A0U1RQG5 324 aaPredicted RBP22.72■■□□□ 1.23
COL27A1-205ENST00000485397 HSPD1P10809 573 aaKnown RBP22.72■■□□□ 1.23
COL27A1-205ENST00000485397 NKX3-2P78367 333 aa22.72■■□□□ 1.23
COL27A1-205ENST00000485397 NMIQ13287 307 aaPredicted RBP22.72■■□□□ 1.23
COL27A1-205ENST00000485397 NSMFQ6X4W1 530 aa22.72■■□□□ 1.23
COL27A1-205ENST00000485397 EEPD1Q7L9B9 569 aa22.72■■□□□ 1.23
COL27A1-205ENST00000485397 ZNF589Q86UQ0 364 aaPredicted RBP22.72■■□□□ 1.23
COL27A1-205ENST00000485397 TMEM47Q9BQJ4 181 aa22.72■■□□□ 1.23
COL27A1-205ENST00000485397 LNPKQ9C0E8 428 aa22.72■■□□□ 1.23
COL27A1-205ENST00000485397 PDGFCQ9NRA1 345 aa22.72■■□□□ 1.23
COL27A1-205ENST00000485397 GNEQ9Y223 722 aaKnown RBP22.72■■□□□ 1.23
COL27A1-205ENST00000485397 MROH7Q68CQ1 1323 aa22.72■■□□□ 1.23
COL27A1-205ENST00000485397 HAND2P61296 217 aa22.71■■□□□ 1.23
COL27A1-205ENST00000485397 RANBP17Q9H2T7 1088 aaKnown RBP22.71■■□□□ 1.23
COL27A1-205ENST00000485397 GPCPD1Q9NPB8 672 aa22.71■■□□□ 1.23
COL27A1-205ENST00000485397 FRMPD2Q68DX3 1309 aaPredicted RBP22.71■■□□□ 1.23
COL27A1-205ENST00000485397 ICAM1P05362 532 aa22.7■■□□□ 1.22
COL27A1-205ENST00000485397 TOP1P11387 765 aaKnown RBP22.7■■□□□ 1.22
COL27A1-205ENST00000485397 SMPD1P17405 629 aa22.7■■□□□ 1.22
COL27A1-205ENST00000485397 TMEM63BQ5T3F8 832 aa22.7■■□□□ 1.22
COL27A1-205ENST00000485397 SYDE2Q5VT97 1194 aa22.7■■□□□ 1.22
COL27A1-205ENST00000485397 MFSD5Q6N075 450 aa22.7■■□□□ 1.22
COL27A1-205ENST00000485397 CXCL17Q6UXB2 119 aa22.7■■□□□ 1.22
COL27A1-205ENST00000485397 BTNL9Q6UXG8 535 aa22.7■■□□□ 1.22
COL27A1-205ENST00000485397 FBXO16Q8IX29 292 aaPredicted RBP22.7■■□□□ 1.22
COL27A1-205ENST00000485397 FAM126BQ8IXS8 530 aa22.7■■□□□ 1.22
COL27A1-205ENST00000485397 MYLIPQ8WY64 445 aa22.7■■□□□ 1.22
COL27A1-205ENST00000485397 TRIM6-TRIM34B2RNG4 842 aa22.69■■□□□ 1.22
COL27A1-205ENST00000485397 DYNC1LI2O43237 492 aaPredicted RBP22.69■■□□□ 1.22
COL27A1-205ENST00000485397 TAPT1Q6NXT6 567 aa22.69■■□□□ 1.22
COL27A1-205ENST00000485397 TLK2Q86UE8 772 aa22.69■■□□□ 1.22
COL27A1-205ENST00000485397 PHF6Q8IWS0 365 aaKnown RBP eCLIP22.69■■□□□ 1.22
COL27A1-205ENST00000485397 RILPL2Q969X0 211 aa22.69■■□□□ 1.22
COL27A1-205ENST00000485397 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.69■■□□□ 1.222e-27■■□□□ 14.5
COL27A1-205ENST00000485397 PPP1R12CQ9BZL4 782 aa22.69■■□□□ 1.22
COL27A1-205ENST00000485397 TCP11L1Q9NUJ3 509 aa22.69■■□□□ 1.22
COL27A1-205ENST00000485397 BAATQ14032 418 aaPredicted RBP22.68■■□□□ 1.22
COL27A1-205ENST00000485397 B4GALNT3Q6L9W6 998 aa22.68■■□□□ 1.22
COL27A1-205ENST00000485397 C16orf59Q7L2K0 433 aa22.68■■□□□ 1.22
COL27A1-205ENST00000485397 AP5M1Q9H0R1 490 aa22.68■■□□□ 1.22
COL27A1-205ENST00000485397 ZMYM6O95789 1325 aa22.67■■□□□ 1.22
COL27A1-205ENST00000485397 CCDC171Q6TFL3 1326 aa22.67■■□□□ 1.22
COL27A1-205ENST00000485397 NFIBO00712 420 aa22.67■■□□□ 1.22
COL27A1-205ENST00000485397 TLR3O15455 904 aaKnown RBP22.67■■□□□ 1.22
COL27A1-205ENST00000485397 CSF2RAP15509 400 aa22.67■■□□□ 1.22
COL27A1-205ENST00000485397 FSCN1Q16658 493 aaKnown RBP22.67■■□□□ 1.22
COL27A1-205ENST00000485397 IQSEC1Q6DN90 963 aa22.67■■□□□ 1.22
COL27A1-205ENST00000485397 TICAM2Q86XR7 235 aa22.67■■□□□ 1.22
COL27A1-205ENST00000485397 HSFX4A0A1B0GTS1 333 aaPredicted RBP22.66■■□□□ 1.22
COL27A1-205ENST00000485397 HSFX3A0A1B0GWH4 333 aaPredicted RBP22.66■■□□□ 1.22
COL27A1-205ENST00000485397 CD4P01730 458 aa22.66■■□□□ 1.22
COL27A1-205ENST00000485397 ACRP10323 421 aa22.66■■□□□ 1.22
COL27A1-205ENST00000485397 PDHBP11177 359 aa22.66■■□□□ 1.22
COL27A1-205ENST00000485397 PPIGQ13427 754 aaKnown RBP eCLIP22.66■■□□□ 1.221e-23■■■■□ 19.9
COL27A1-205ENST00000485397 TMEM240Q5SV17 173 aa22.66■■□□□ 1.22
COL27A1-205ENST00000485397 KIAA1211Q6ZU35 1233 aa22.66■■□□□ 1.22
COL27A1-205ENST00000485397 TBC1D10CQ8IV04 446 aa22.66■■□□□ 1.22
COL27A1-205ENST00000485397 SLC43A3Q8NBI5 491 aa22.66■■□□□ 1.22
COL27A1-205ENST00000485397 MAFAQ8NHW3 353 aaPredicted RBP22.66■■□□□ 1.22
COL27A1-205ENST00000485397 MORC4Q8TE76 937 aa22.66■■□□□ 1.22
COL27A1-205ENST00000485397 LRRC37A2A6NM11 1700 aa22.65■■□□□ 1.22
COL27A1-205ENST00000485397 GRIN2DO15399 1336 aa22.65■■□□□ 1.22
COL27A1-205ENST00000485397 CABYRO75952 493 aa22.65■■□□□ 1.22
COL27A1-205ENST00000485397 AKNAD1Q5T1N1 836 aa22.65■■□□□ 1.22
COL27A1-205ENST00000485397 MFSD6Q6ZSS7 791 aa22.65■■□□□ 1.22
COL27A1-205ENST00000485397 SMC5Q8IY18 1101 aa22.65■■□□□ 1.22
COL27A1-205ENST00000485397 TMEM199Q8N511 208 aa22.65■■□□□ 1.22
COL27A1-205ENST00000485397 VTA1Q9NP79 307 aa22.65■■□□□ 1.22
COL27A1-205ENST00000485397 LCTP09848 1927 aa22.65■■□□□ 1.22
COL27A1-205ENST00000485397 LAMA2P24043 3122 aaKnown RBP22.64■■□□□ 1.22
COL27A1-205ENST00000485397 TMEM265A0A087WTH1 108 aa22.64■■□□□ 1.21
COL27A1-205ENST00000485397 PTPDC1A2A3K4 754 aa22.64■■□□□ 1.21
COL27A1-205ENST00000485397 SDSP20132 328 aa22.64■■□□□ 1.21
COL27A1-205ENST00000485397 DNAJB2P25686 324 aa22.64■■□□□ 1.21
COL27A1-205ENST00000485397 CYP2C18P33260 490 aa22.64■■□□□ 1.21
COL27A1-205ENST00000485397 ALDH5A1P51649 535 aaPredicted RBP22.64■■□□□ 1.21
COL27A1-205ENST00000485397 ITGA7Q13683 1181 aa22.64■■□□□ 1.21
COL27A1-205ENST00000485397 CLEC4DQ8WXI8 215 aa22.64■■□□□ 1.21
COL27A1-205ENST00000485397 COL25A1Q9BXS0 654 aaPredicted RBP22.64■■□□□ 1.21
COL27A1-205ENST00000485397 Q9Y3F1 56 aa22.64■■□□□ 1.21
COL27A1-205ENST00000485397 ZEB2O60315 1214 aa22.63■■□□□ 1.21
COL27A1-205ENST00000485397 PSMC6P62333 389 aa22.63■■□□□ 1.21
COL27A1-205ENST00000485397 ZNF543Q08ER8 600 aa22.63■■□□□ 1.21
COL27A1-205ENST00000485397 SLC30A10Q6XR72 485 aa22.63■■□□□ 1.21
COL27A1-205ENST00000485397 ZNF365Q70YC5 407 aa22.63■■□□□ 1.21
COL27A1-205ENST00000485397 PLEKHM2Q8IWE5 1019 aa22.63■■□□□ 1.21
COL27A1-205ENST00000485397 TTC14Q96N46 770 aa22.63■■□□□ 1.21
COL27A1-205ENST00000485397 RWDD1Q9H446 243 aaPredicted RBP22.63■■□□□ 1.21
COL27A1-205ENST00000485397 ADD3Q9UEY8 706 aaKnown RBP22.63■■□□□ 1.21
COL27A1-205ENST00000485397 UMODL1Q5DID0 1318 aa22.62■■□□□ 1.21
COL27A1-205ENST00000485397 GRXCR1A8MXD5 290 aa22.62■■□□□ 1.21
COL27A1-205ENST00000485397 IGHDP01880 384 aa22.62■■□□□ 1.21
COL27A1-205ENST00000485397 FOSL2P15408 326 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms