RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 RANBP17Q9H2T7 1088 aaKnown RBP25.4■■□□□ 1.66
USP40-215ENST00000484528 DIAPH3Q9NSV4 1193 aa25.4■■□□□ 1.66
USP40-215ENST00000484528 TCP11L1Q9NUJ3 509 aa25.4■■□□□ 1.66
USP40-215ENST00000484528 MOXD2PA6NHM9 499 aa25.39■■□□□ 1.66
USP40-215ENST00000484528 ICAM1P05362 532 aa25.39■■□□□ 1.66
USP40-215ENST00000484528 NUP133Q8WUM0 1156 aa25.39■■□□□ 1.66
USP40-215ENST00000484528 ZKSCAN3Q9BRR0 538 aa25.39■■□□□ 1.66
USP40-215ENST00000484528 UPF3AQ9H1J1 476 aaKnown RBP25.39■■□□□ 1.66
USP40-215ENST00000484528 CYP39A1Q9NYL5 469 aa25.39■■□□□ 1.66
USP40-215ENST00000484528 ASGR1P07306 291 aa25.38■■□□□ 1.65
USP40-215ENST00000484528 PDHBP11177 359 aa25.38■■□□□ 1.65
USP40-215ENST00000484528 PTGS1P23219 599 aa25.38■■□□□ 1.65
USP40-215ENST00000484528 CST5P28325 142 aaPredicted RBP25.38■■□□□ 1.65
USP40-215ENST00000484528 BTNL9Q6UXG8 535 aa25.38■■□□□ 1.65
USP40-215ENST00000484528 NOL8Q76FK4 1167 aaKnown RBP25.38■■□□□ 1.65
USP40-215ENST00000484528 EEPD1Q7L9B9 569 aa25.38■■□□□ 1.65
USP40-215ENST00000484528 SPC25Q9HBM1 224 aa25.38■■□□□ 1.65
USP40-215ENST00000484528 MTMR10Q9NXD2 777 aa25.38■■□□□ 1.65
USP40-215ENST00000484528 ASB14A6NK59 587 aa25.37■■□□□ 1.65
USP40-215ENST00000484528 RAG1P15918 1043 aa25.37■■□□□ 1.65
USP40-215ENST00000484528 GJA9P57773 515 aa25.37■■□□□ 1.65
USP40-215ENST00000484528 BEX3Q00994 111 aa25.37■■□□□ 1.65
USP40-215ENST00000484528 TNFAIP2Q03169 654 aa25.37■■□□□ 1.65
USP40-215ENST00000484528 VTI1AQ96AJ9 217 aa25.37■■□□□ 1.65
USP40-215ENST00000484528 GLT1D1Q96MS3 346 aa25.37■■□□□ 1.65
USP40-215ENST00000484528 RNF41Q9H4P4 317 aaPredicted RBP25.37■■□□□ 1.65
USP40-215ENST00000484528 TMEM39AQ9NV64 488 aa25.37■■□□□ 1.65
USP40-215ENST00000484528 NFIBO00712 420 aa25.36■■□□□ 1.65
USP40-215ENST00000484528 FAAP100Q0VG06 881 aa25.36■■□□□ 1.65
USP40-215ENST00000484528 GNASQ5JWF2 1037 aa25.36■■□□□ 1.65
USP40-215ENST00000484528 FBXO16Q8IX29 292 aaPredicted RBP25.36■■□□□ 1.65
USP40-215ENST00000484528 PCSK9Q8NBP7 692 aaKnown RBP25.36■■□□□ 1.65
USP40-215ENST00000484528 MYH6P13533 1939 aa25.35■■□□□ 1.65
USP40-215ENST00000484528 DCDC2CA8MYV0 355 aa25.35■■□□□ 1.65
USP40-215ENST00000484528 ZNF213O14771 459 aa25.35■■□□□ 1.65
USP40-215ENST00000484528 KIAA0355O15063 1070 aa25.35■■□□□ 1.65
USP40-215ENST00000484528 CTAGE5O15320 804 aa25.35■■□□□ 1.65
USP40-215ENST00000484528 PCP11498 1178 aaKnown RBP25.35■■□□□ 1.65
USP40-215ENST00000484528 ZNF543Q08ER8 600 aa25.35■■□□□ 1.65
USP40-215ENST00000484528 ANKRD33Q7Z3H0 272 aa25.35■■□□□ 1.65
USP40-215ENST00000484528 ESR2Q92731 530 aa25.35■■□□□ 1.65
USP40-215ENST00000484528 FAM161BQ96MY7 647 aa25.35■■□□□ 1.65
USP40-215ENST00000484528 PDGFCQ9NRA1 345 aa25.35■■□□□ 1.65
USP40-215ENST00000484528 SUPT16HQ9Y5B9 1047 aaKnown RBP25.35■■□□□ 1.65
USP40-215ENST00000484528 EPHB4P54760 987 aa25.34■■□□□ 1.65
USP40-215ENST00000484528 BAATQ14032 418 aaPredicted RBP25.34■■□□□ 1.65
USP40-215ENST00000484528 ELP1O95163 1332 aa25.34■■□□□ 1.65
USP40-215ENST00000484528 PTPDC1A2A3K4 754 aa25.33■■□□□ 1.65
USP40-215ENST00000484528 KDM4AO75164 1064 aa25.33■■□□□ 1.65
USP40-215ENST00000484528 GOLGA8HP0CJ92 632 aa25.33■■□□□ 1.65
USP40-215ENST00000484528 TMEM63BQ5T3F8 832 aa25.33■■□□□ 1.65
USP40-215ENST00000484528 TLK2Q86UE8 772 aa25.33■■□□□ 1.65
USP40-215ENST00000484528 TTC14Q96N46 770 aa25.33■■□□□ 1.65
USP40-215ENST00000484528 TOX2Q96NM4 488 aa25.33■■□□□ 1.65
USP40-215ENST00000484528 CPVLQ9H3G5 476 aa25.33■■□□□ 1.65
USP40-215ENST00000484528 B4E1Z4 1266 aa25.32■■□□□ 1.64
USP40-215ENST00000484528 SNHG28P0DPA3 235 aa25.32■■□□□ 1.64
USP40-215ENST00000484528 SMPD1P17405 629 aa25.32■■□□□ 1.64
USP40-215ENST00000484528 SLC30A10Q6XR72 485 aa25.32■■□□□ 1.64
USP40-215ENST00000484528 GNEQ9Y223 722 aaKnown RBP25.32■■□□□ 1.64
USP40-215ENST00000484528 A0A0U1RQG5 324 aaPredicted RBP25.31■■□□□ 1.64
USP40-215ENST00000484528 HIP1O00291 1037 aa25.31■■□□□ 1.64
USP40-215ENST00000484528 CALML3P27482 149 aa25.31■■□□□ 1.64
USP40-215ENST00000484528 PDE4AP27815 886 aa25.31■■□□□ 1.64
USP40-215ENST00000484528 IRX6P78412 446 aaPredicted RBP25.31■■□□□ 1.64
USP40-215ENST00000484528 FPGSQ05932 587 aa25.31■■□□□ 1.64
USP40-215ENST00000484528 TAPT1Q6NXT6 567 aa25.31■■□□□ 1.64
USP40-215ENST00000484528 CXCL17Q6UXB2 119 aa25.31■■□□□ 1.64
USP40-215ENST00000484528 SLC17A8Q8NDX2 589 aa25.31■■□□□ 1.64
USP40-215ENST00000484528 IL25Q9H293 177 aa25.31■■□□□ 1.64
USP40-215ENST00000484528 DYNC1LI2O43237 492 aaPredicted RBP25.3■■□□□ 1.64
USP40-215ENST00000484528 CDK7P50613 346 aa25.3■■□□□ 1.64
USP40-215ENST00000484528 ALDH5A1P51649 535 aaPredicted RBP25.3■■□□□ 1.64
USP40-215ENST00000484528 FSCN1Q16658 493 aaKnown RBP25.3■■□□□ 1.64
USP40-215ENST00000484528 CLEC4DQ8WXI8 215 aa25.3■■□□□ 1.64
USP40-215ENST00000484528 AP5M1Q9H0R1 490 aa25.3■■□□□ 1.64
USP40-215ENST00000484528 TBX21Q9UL17 535 aa25.3■■□□□ 1.64
USP40-215ENST00000484528 STXBP5LQ9Y2K9 1186 aa25.3■■□□□ 1.64
USP40-215ENST00000484528 MROH7Q68CQ1 1323 aa25.3■■□□□ 1.64
USP40-215ENST00000484528 ARVCFO00192 962 aa25.29■■□□□ 1.64
USP40-215ENST00000484528 KIAA1211Q6ZU35 1233 aa25.29■■□□□ 1.64
USP40-215ENST00000484528 IQCA1Q86XH1 822 aa25.29■■□□□ 1.64
USP40-215ENST00000484528 PNMA1Q8ND90 353 aa25.29■■□□□ 1.64
USP40-215ENST00000484528 RNPC3Q96LT9 517 aaKnown RBP25.29■■□□□ 1.64
USP40-215ENST00000484528 GUCD1Q96NT3 240 aa25.29■■□□□ 1.64
USP40-215ENST00000484528 DSCC1Q9BVC3 393 aa25.29■■□□□ 1.64
USP40-215ENST00000484528 UBA5Q9GZZ9 404 aa25.29■■□□□ 1.64
USP40-215ENST00000484528 VTA1Q9NP79 307 aa25.29■■□□□ 1.64
USP40-215ENST00000484528 ADD3Q9UEY8 706 aaKnown RBP25.29■■□□□ 1.64
USP40-215ENST00000484528 NKX3-2P78367 333 aa25.28■■□□□ 1.64
USP40-215ENST00000484528 IMMTQ16891 758 aaKnown RBP25.28■■□□□ 1.64
USP40-215ENST00000484528 USH1GQ495M9 461 aa25.28■■□□□ 1.64
USP40-215ENST00000484528 ZNF697Q5TEC3 545 aa25.28■■□□□ 1.64
USP40-215ENST00000484528 FAM109BQ6ICB4 259 aaPredicted RBP25.28■■□□□ 1.64
USP40-215ENST00000484528 RNF207Q6ZRF8 634 aa25.28■■□□□ 1.64
USP40-215ENST00000484528 DGKHQ86XP1 1220 aa25.28■■□□□ 1.64
USP40-215ENST00000484528 MORC4Q8TE76 937 aa25.28■■□□□ 1.64
USP40-215ENST00000484528 TIMP1P01033 207 aa25.27■■□□□ 1.64
USP40-215ENST00000484528 GPATCH4Q5T3I0 446 aaKnown RBP25.27■■□□□ 1.64
USP40-215ENST00000484528 IQSEC1Q6DN90 963 aa25.27■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms