RNA–Protein interactions for RNA: ENST00000483851.6

SHOX2-204, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SHOX2, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-204ENST00000483851 CCDC39Q9UFE4 941 aa29.8■■■□□ 2.36
SHOX2-204ENST00000483851 ANO6Q4KMQ2 910 aa29.79■■■□□ 2.36
SHOX2-204ENST00000483851 DTHD1Q6ZMT9 781 aa29.79■■■□□ 2.36
SHOX2-204ENST00000483851 POLR2DO15514 142 aaKnown RBP29.78■■■□□ 2.36
SHOX2-204ENST00000483851 DDNO94850 711 aaPredicted RBP29.78■■■□□ 2.36
SHOX2-204ENST00000483851 AP3B2Q13367 1082 aa29.78■■■□□ 2.36
SHOX2-204ENST00000483851 ZRSR1Q15695 479 aaKnown RBP29.78■■■□□ 2.36
SHOX2-204ENST00000483851 LETM2Q2VYF4 491 aa29.78■■■□□ 2.36
SHOX2-204ENST00000483851 SUPT20HL1Q3ZLR7 823 aa29.78■■■□□ 2.36
SHOX2-204ENST00000483851 SYMPKQ92797 1274 aaKnown RBP29.78■■■□□ 2.36
SHOX2-204ENST00000483851 FEZ1Q99689 392 aa29.78■■■□□ 2.36
SHOX2-204ENST00000483851 TMEM260Q9NX78 707 aa29.78■■■□□ 2.36
SHOX2-204ENST00000483851 TUBE1Q9UJT0 475 aa29.78■■■□□ 2.36
SHOX2-204ENST00000483851 CCNT1O60563 726 aaKnown RBP29.78■■■□□ 2.36
SHOX2-204ENST00000483851 SCYL3Q8IZE3 742 aa29.78■■■□□ 2.36
SHOX2-204ENST00000483851 WDR46O15213 610 aaKnown RBP29.77■■■□□ 2.36
SHOX2-204ENST00000483851 NEMFO60524 1076 aa29.77■■■□□ 2.36
SHOX2-204ENST00000483851 C9orf131Q5VYM1 1079 aa29.77■■■□□ 2.36
SHOX2-204ENST00000483851 PPP4R3AQ6IN85 833 aa29.77■■■□□ 2.36
SHOX2-204ENST00000483851 WDR18Q9BV38 432 aa29.77■■■□□ 2.36
SHOX2-204ENST00000483851 RANBP17Q9H2T7 1088 aaKnown RBP29.77■■■□□ 2.36
SHOX2-204ENST00000483851 AK8Q96MA6 479 aa29.76■■■□□ 2.36
SHOX2-204ENST00000483851 AS3MTQ9HBK9 375 aa29.76■■■□□ 2.36
SHOX2-204ENST00000483851 ZC3H4Q9UPT8 1303 aaKnown RBP29.76■■■□□ 2.35
SHOX2-204ENST00000483851 OR52Z1P0C646 297 aa29.76■■■□□ 2.35
SHOX2-204ENST00000483851 GCFC2P16383 781 aaKnown RBP29.76■■■□□ 2.35
SHOX2-204ENST00000483851 TXLNAP40222 546 aa29.76■■■□□ 2.35
SHOX2-204ENST00000483851 USP14P54578 494 aa29.76■■■□□ 2.35
SHOX2-204ENST00000483851 IL17AQ16552 155 aa29.76■■■□□ 2.35
SHOX2-204ENST00000483851 EPSTI1Q96J88 318 aa29.76■■■□□ 2.35
SHOX2-204ENST00000483851 GLIS2Q9BZE0 524 aaPredicted RBP29.76■■■□□ 2.35
SHOX2-204ENST00000483851 ZKSCAN5Q9Y2L8 839 aa29.76■■■□□ 2.35
SHOX2-204ENST00000483851 FOSP01100 380 aaPredicted RBP29.75■■■□□ 2.35
SHOX2-204ENST00000483851 ZNF165P49910 485 aa29.75■■■□□ 2.35
SHOX2-204ENST00000483851 DPY19L2Q6NUT2 758 aa29.75■■■□□ 2.35
SHOX2-204ENST00000483851 USP49Q70CQ1 688 aa29.75■■■□□ 2.35
SHOX2-204ENST00000483851 NAT10Q9H0A0 1025 aaKnown RBP29.75■■■□□ 2.35
SHOX2-204ENST00000483851 TMEM60Q9H2L4 133 aa29.75■■■□□ 2.35
SHOX2-204ENST00000483851 FRMD4AQ9P2Q2 1039 aaPredicted RBP29.75■■■□□ 2.35
SHOX2-204ENST00000483851 ACTN4O43707 911 aaKnown RBP29.74■■■□□ 2.35
SHOX2-204ENST00000483851 SLFN14P0C7P3 912 aa29.74■■■□□ 2.35
SHOX2-204ENST00000483851 MDM2Q00987 491 aaPredicted RBP29.74■■■□□ 2.35
SHOX2-204ENST00000483851 INPP5BP32019 993 aa29.74■■■□□ 2.35
SHOX2-204ENST00000483851 UBE2SQ16763 222 aa29.74■■■□□ 2.35
SHOX2-204ENST00000483851 PIK3CDO00329 1044 aa29.73■■■□□ 2.35
SHOX2-204ENST00000483851 ZNF500O60304 480 aaPredicted RBP29.73■■■□□ 2.35
SHOX2-204ENST00000483851 MSNP26038 577 aaKnown RBP29.73■■■□□ 2.35
SHOX2-204ENST00000483851 USP11P51784 963 aa29.73■■■□□ 2.35
SHOX2-204ENST00000483851 CEP57L1Q8IYX8 460 aa29.73■■■□□ 2.35
SHOX2-204ENST00000483851 L3MBTL3Q96JM7 780 aaPredicted RBP29.73■■■□□ 2.35
SHOX2-204ENST00000483851 DNAJC25Q9H1X3 360 aa29.73■■■□□ 2.35
SHOX2-204ENST00000483851 CBX8Q9HC52 389 aa29.73■■■□□ 2.35
SHOX2-204ENST00000483851 PICK1Q9NRD5 415 aa29.73■■■□□ 2.35
SHOX2-204ENST00000483851 SERTAD1Q9UHV2 236 aa29.73■■■□□ 2.35
SHOX2-204ENST00000483851 MEIS2O14770 477 aa29.72■■■□□ 2.35
SHOX2-204ENST00000483851 ADCY5O95622 1261 aa29.72■■■□□ 2.35
SHOX2-204ENST00000483851 NLRP12P59046 1061 aa29.72■■■□□ 2.35
SHOX2-204ENST00000483851 ZYXQ15942 572 aaKnown RBP29.72■■■□□ 2.35
SHOX2-204ENST00000483851 NOL9Q5SY16 702 aaKnown RBP29.72■■■□□ 2.35
SHOX2-204ENST00000483851 IQUBQ8NA54 791 aa29.72■■■□□ 2.35
SHOX2-204ENST00000483851 POSTNQ15063 836 aa29.72■■■□□ 2.35
SHOX2-204ENST00000483851 MOXD1Q6UVY6 613 aa29.72■■■□□ 2.35
SHOX2-204ENST00000483851 KLRG1Q96E93 195 aa29.72■■■□□ 2.35
SHOX2-204ENST00000483851 WRNIP1Q96S55 665 aa29.72■■■□□ 2.35
SHOX2-204ENST00000483851 CCSER1Q9C0I3 900 aa29.72■■■□□ 2.35
SHOX2-204ENST00000483851 NT5DC1Q5TFE4 455 aa29.71■■■□□ 2.35
SHOX2-204ENST00000483851 PRPF38AQ8NAV1 312 aaKnown RBP29.71■■■□□ 2.35
SHOX2-204ENST00000483851 BPIFA3Q9BQP9 254 aa29.71■■■□□ 2.35
SHOX2-204ENST00000483851 AP5Z1O43299 807 aa29.7■■■□□ 2.35
SHOX2-204ENST00000483851 PDILTQ8N807 584 aa29.7■■■□□ 2.35
SHOX2-204ENST00000483851 KIFC2Q96AC6 838 aa29.7■■■□□ 2.35
SHOX2-204ENST00000483851 DCPSQ96C86 337 aaKnown RBP29.7■■■□□ 2.35
SHOX2-204ENST00000483851 MTMR9Q96QG7 549 aa29.7■■■□□ 2.35
SHOX2-204ENST00000483851 PNMA2Q9UL42 364 aa29.7■■■□□ 2.35
SHOX2-204ENST00000483851 USH1GQ495M9 461 aa29.7■■■□□ 2.34
SHOX2-204ENST00000483851 CCDC84Q86UT8 332 aaPredicted RBP29.7■■■□□ 2.34
SHOX2-204ENST00000483851 ANO3Q9BYT9 981 aa29.7■■■□□ 2.34
SHOX2-204ENST00000483851 MYH7BA7E2Y1 1941 aa29.69■■■□□ 2.34
SHOX2-204ENST00000483851 USP17L15C9J2P7 530 aa29.69■■■□□ 2.34
SHOX2-204ENST00000483851 USP17L13C9JLJ4 530 aa29.69■■■□□ 2.34
SHOX2-204ENST00000483851 USP17L11C9JVI0 530 aa29.69■■■□□ 2.34
SHOX2-204ENST00000483851 USP17L18D6R9N7 530 aa29.69■■■□□ 2.34
SHOX2-204ENST00000483851 USP17L22D6RA61 530 aa29.69■■■□□ 2.34
SHOX2-204ENST00000483851 USP17L17D6RBQ6 530 aa29.69■■■□□ 2.34
SHOX2-204ENST00000483851 USP17L19D6RCP7 530 aa29.69■■■□□ 2.34
SHOX2-204ENST00000483851 USP17L20D6RJB6 530 aa29.69■■■□□ 2.34
SHOX2-204ENST00000483851 EDIL3O43854 480 aa29.69■■■□□ 2.34
SHOX2-204ENST00000483851 FDX1P10109 184 aa29.69■■■□□ 2.34
SHOX2-204ENST00000483851 PTPRAP18433 802 aa29.69■■■□□ 2.34
SHOX2-204ENST00000483851 SNAP25P60880 206 aa29.69■■■□□ 2.34
SHOX2-204ENST00000483851 USP17L24Q0WX57 530 aa29.69■■■□□ 2.34
SHOX2-204ENST00000483851 PNOCQ13519 176 aa29.69■■■□□ 2.34
SHOX2-204ENST00000483851 USP17L6PQ6QN14 398 aa29.69■■■□□ 2.34
SHOX2-204ENST00000483851 SH3RF1Q7Z6J0 888 aa29.69■■■□□ 2.34
SHOX2-204ENST00000483851 DHX58Q96C10 678 aa29.69■■■□□ 2.34
SHOX2-204ENST00000483851 MRPL11Q9Y3B7 192 aaKnown RBP29.69■■■□□ 2.34
SHOX2-204ENST00000483851 POLR2AP24928 1970 aaKnown RBP29.68■■■□□ 2.34
SHOX2-204ENST00000483851 A0A087X0B3 334 aa29.68■■■□□ 2.34
SHOX2-204ENST00000483851 E2F4Q16254 413 aa29.68■■■□□ 2.34
SHOX2-204ENST00000483851 CALCRLQ16602 461 aa29.68■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms