RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 A0A1W2PQU0 124 aa9.19□□□□□ -0.94
USP40-213ENST00000483216 ZNF503-AS2A6NEH8 195 aa9.19□□□□□ -0.94
USP40-213ENST00000483216 TBX1O43435 398 aa9.19□□□□□ -0.94
USP40-213ENST00000483216 HOXC12P31275 282 aa9.19□□□□□ -0.94
USP40-213ENST00000483216 SCRN1Q12765 414 aa9.19□□□□□ -0.94
USP40-213ENST00000483216 KSR1Q8IVT5 923 aa9.19□□□□□ -0.94
USP40-213ENST00000483216 PMFBP1Q8TBY8 1022 aa9.19□□□□□ -0.94
USP40-213ENST00000483216 CCDC140Q96MF4 163 aa9.19□□□□□ -0.94
USP40-213ENST00000483216 TRBV23OR9-2A0A075B6M9 112 aa9.18□□□□□ -0.94
USP40-213ENST00000483216 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.18□□□□□ -0.94
USP40-213ENST00000483216 SCG5P05408 212 aa9.18□□□□□ -0.94
USP40-213ENST00000483216 PPP2R2AP63151 447 aa9.18□□□□□ -0.94
USP40-213ENST00000483216 RASA3Q14644 834 aa9.18□□□□□ -0.94
USP40-213ENST00000483216 JMJD8Q96S16 334 aa9.18□□□□□ -0.94
USP40-213ENST00000483216 PLCD4Q9BRC7 762 aa9.18□□□□□ -0.94
USP40-213ENST00000483216 CRTAC1Q9NQ79 661 aa9.18□□□□□ -0.94
USP40-213ENST00000483216 FAM53CQ9NYF3 392 aa9.18□□□□□ -0.94
USP40-213ENST00000483216 YBX2Q9Y2T7 364 aaKnown RBP9.18□□□□□ -0.94
USP40-213ENST00000483216 TAF6LQ9Y6J9 622 aa9.18□□□□□ -0.94
USP40-213ENST00000483216 PAX4O43316 350 aa9.17□□□□□ -0.94
USP40-213ENST00000483216 EFEMP2O95967 443 aa9.17□□□□□ -0.94
USP40-213ENST00000483216 CYP4F3Q08477 520 aa9.17□□□□□ -0.94
USP40-213ENST00000483216 LRRC47Q8N1G4 583 aaKnown RBP9.17□□□□□ -0.94
USP40-213ENST00000483216 ACSL6Q9UKU0 697 aa9.17□□□□□ -0.94
USP40-213ENST00000483216 CCDC85CA6NKD9 419 aa9.16□□□□□ -0.94
USP40-213ENST00000483216 CPP00450 1065 aa9.16□□□□□ -0.94
USP40-213ENST00000483216 PAMP19021 973 aa9.16□□□□□ -0.94
USP40-213ENST00000483216 HSP90AA2PQ14568 343 aaPredicted RBP9.16□□□□□ -0.94
USP40-213ENST00000483216 MTERF2Q49AM1 385 aa9.16□□□□□ -0.94
USP40-213ENST00000483216 JAMLQ86YT9 394 aa9.16□□□□□ -0.94
USP40-213ENST00000483216 DEPDC7Q96QD5 511 aa9.16□□□□□ -0.94
USP40-213ENST00000483216 OSBPL2Q9H1P3 480 aa9.16□□□□□ -0.94
USP40-213ENST00000483216 SLC6A17Q9H1V8 727 aa9.16□□□□□ -0.94
USP40-213ENST00000483216 SNTG2Q9NY99 539 aa9.16□□□□□ -0.94
USP40-213ENST00000483216 THBDP07204 575 aa9.15□□□□□ -0.94
USP40-213ENST00000483216 SNRPB2P08579 225 aaKnown RBP9.15□□□□□ -0.94
USP40-213ENST00000483216 PNLIPP16233 465 aa9.15□□□□□ -0.94
USP40-213ENST00000483216 L1CAMP32004 1257 aa9.15□□□□□ -0.94
USP40-213ENST00000483216 GFRA1P56159 465 aa9.15□□□□□ -0.94
USP40-213ENST00000483216 SPATC1Q76KD6 591 aa9.15□□□□□ -0.94
USP40-213ENST00000483216 NLGN2Q8NFZ4 835 aa9.15□□□□□ -0.94
USP40-213ENST00000483216 LIN37Q96GY3 246 aaPredicted RBP9.15□□□□□ -0.94
USP40-213ENST00000483216 MMP19Q99542 508 aa9.15□□□□□ -0.94
USP40-213ENST00000483216 GPRC5CQ9NQ84 441 aa9.15□□□□□ -0.94
USP40-213ENST00000483216 NPHP3-ACAD11A0A0J9YXS1 232 aa9.14□□□□□ -0.95
USP40-213ENST00000483216 PLS3P13797 630 aa9.14□□□□□ -0.95
USP40-213ENST00000483216 CORO7P57737 925 aa9.14□□□□□ -0.95
USP40-213ENST00000483216 LAPTM5Q13571 262 aa9.14□□□□□ -0.95
USP40-213ENST00000483216 MPZL3Q6UWV2 235 aa9.14□□□□□ -0.95
USP40-213ENST00000483216 NPLOC4Q8TAT6 608 aa9.14□□□□□ -0.95
USP40-213ENST00000483216 FRS2Q8WU20 508 aa9.14□□□□□ -0.95
USP40-213ENST00000483216 INTS4Q96HW7 963 aaKnown RBP9.14□□□□□ -0.95
USP40-213ENST00000483216 FMNL2Q96PY5 1086 aa9.14□□□□□ -0.95
USP40-213ENST00000483216 SRPK1Q96SB4 655 aaKnown RBP9.14□□□□□ -0.95
USP40-213ENST00000483216 SPATA9Q9BWV2 254 aa9.14□□□□□ -0.95
USP40-213ENST00000483216 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.14□□□□□ -0.95
USP40-213ENST00000483216 CLEC1BQ9P126 229 aa9.14□□□□□ -0.95
USP40-213ENST00000483216 IMPACTQ9P2X3 320 aa9.14□□□□□ -0.95
USP40-213ENST00000483216 RNF114Q9Y508 228 aa9.14□□□□□ -0.95
USP40-213ENST00000483216 FAM221BA6H8Z2 402 aa9.13□□□□□ -0.95
USP40-213ENST00000483216 PRKCAP17252 672 aa9.13□□□□□ -0.95
USP40-213ENST00000483216 GRIA2P42262 883 aa9.13□□□□□ -0.95
USP40-213ENST00000483216 RBM10P98175 930 aaKnown RBP9.13□□□□□ -0.95
USP40-213ENST00000483216 IFRD2Q12894 506 aaPredicted RBP9.13□□□□□ -0.95
USP40-213ENST00000483216 SF1Q15637 639 aaKnown RBP9.13□□□□□ -0.95
USP40-213ENST00000483216 E4F1Q66K89 784 aaPredicted RBP9.13□□□□□ -0.95
USP40-213ENST00000483216 IRF2BP1Q8IU81 584 aa9.13□□□□□ -0.95
USP40-213ENST00000483216 KREMEN2Q8NCW0 462 aa9.13□□□□□ -0.95
USP40-213ENST00000483216 NUP43Q8NFH3 380 aa9.13□□□□□ -0.95
USP40-213ENST00000483216 AARSD1Q9BTE6 412 aaKnown RBP9.13□□□□□ -0.95
USP40-213ENST00000483216 ARHGEF4Q9NR80 690 aa9.13□□□□□ -0.95
USP40-213ENST00000483216 ECI1P42126 302 aa9.12□□□□□ -0.95
USP40-213ENST00000483216 KCNJ6P48051 423 aa9.12□□□□□ -0.95
USP40-213ENST00000483216 GALK1P51570 392 aa9.12□□□□□ -0.95
USP40-213ENST00000483216 CYP4F8P98187 520 aa9.12□□□□□ -0.95
USP40-213ENST00000483216 MVKQ03426 396 aa9.12□□□□□ -0.95
USP40-213ENST00000483216 MAP4K2Q12851 820 aa9.12□□□□□ -0.95
USP40-213ENST00000483216 KIR3DS1Q14943 382 aa9.12□□□□□ -0.95
USP40-213ENST00000483216 TESK1Q15569 626 aa9.12□□□□□ -0.95
USP40-213ENST00000483216 IQCEQ6IPM2 695 aa9.12□□□□□ -0.95
USP40-213ENST00000483216 CPNE8Q86YQ8 564 aa9.12□□□□□ -0.95
USP40-213ENST00000483216 SIRT2Q8IXJ6 389 aa9.12□□□□□ -0.95
USP40-213ENST00000483216 A0A1W2PQ27 194 aa9.11□□□□□ -0.95
USP40-213ENST00000483216 A0A1W2PQ64 194 aa9.11□□□□□ -0.95
USP40-213ENST00000483216 A0A1W2PQC6 194 aa9.11□□□□□ -0.95
USP40-213ENST00000483216 A0A1W2PQD8 194 aa9.11□□□□□ -0.95
USP40-213ENST00000483216 LRRC10BA6NIK2 292 aa9.11□□□□□ -0.95
USP40-213ENST00000483216 FGFR1P11362 822 aa9.11□□□□□ -0.95
USP40-213ENST00000483216 ARL4AP40617 200 aa9.11□□□□□ -0.95
USP40-213ENST00000483216 SSRP1Q08945 709 aaKnown RBP9.11□□□□□ -0.95
USP40-213ENST00000483216 NFE2L2Q16236 605 aa9.11□□□□□ -0.95
USP40-213ENST00000483216 SLC35F1Q5T1Q4 408 aa9.11□□□□□ -0.95
USP40-213ENST00000483216 ACBD5Q5T8D3 534 aaPredicted RBP9.11□□□□□ -0.95
USP40-213ENST00000483216 TMEM145Q8NBT3 493 aa9.11□□□□□ -0.95
USP40-213ENST00000483216 KCTD13Q8WZ19 329 aa9.11□□□□□ -0.95
USP40-213ENST00000483216 C1orf159Q96HA4 380 aa9.11□□□□□ -0.95
USP40-213ENST00000483216 IER2Q9BTL4 223 aa9.11□□□□□ -0.95
USP40-213ENST00000483216 LNPKQ9C0E8 428 aa9.11□□□□□ -0.95
USP40-213ENST00000483216 PFDN2Q9UHV9 154 aa9.11□□□□□ -0.95
USP40-213ENST00000483216 TRAV20A0A0B4J274 112 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms