RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 DNAJC2Q99543 621 aaKnown RBP9.24□□□□□ -0.93
USP54-213ENST00000481991 SEZ6LQ9BYH1 1024 aa9.24□□□□□ -0.93
USP54-213ENST00000481991 MKNK2Q9HBH9 465 aa9.24□□□□□ -0.93
USP54-213ENST00000481991 CLIP2Q9UDT6 1046 aa9.24□□□□□ -0.93
USP54-213ENST00000481991 FBXO40Q9UH90 709 aa9.24□□□□□ -0.93
USP54-213ENST00000481991 DDX49Q9Y6V7 483 aaKnown RBP9.24□□□□□ -0.93
USP54-213ENST00000481991 TNKSO95271 1327 aa9.24□□□□□ -0.93
USP54-213ENST00000481991 ZNF532Q9HCE3 1301 aa9.24□□□□□ -0.93
USP54-213ENST00000481991 ROBO3Q96MS0 1386 aa9.24□□□□□ -0.93
USP54-213ENST00000481991 ASB14A6NK59 587 aa9.23□□□□□ -0.93
USP54-213ENST00000481991 F5H6K3 240 aa9.23□□□□□ -0.93
USP54-213ENST00000481991 GOLIM4O00461 696 aa9.23□□□□□ -0.93
USP54-213ENST00000481991 IPO8O15397 1037 aaKnown RBP9.23□□□□□ -0.93
USP54-213ENST00000481991 IQCF3P0C7M6 154 aa9.23□□□□□ -0.93
USP54-213ENST00000481991 PDE6AP16499 860 aa9.23□□□□□ -0.93
USP54-213ENST00000481991 ATP8B2P98198 1209 aa9.23□□□□□ -0.93
USP54-213ENST00000481991 KLRC3Q07444 240 aa9.23□□□□□ -0.93
USP54-213ENST00000481991 LEXMQ3ZCV2 418 aa9.23□□□□□ -0.93
USP54-213ENST00000481991 TMEM63BQ5T3F8 832 aa9.23□□□□□ -0.93
USP54-213ENST00000481991 HFE2Q6ZVN8 426 aa9.23□□□□□ -0.93
USP54-213ENST00000481991 AACSQ86V21 672 aa9.23□□□□□ -0.93
USP54-213ENST00000481991 CHST13Q8NET6 341 aa9.23□□□□□ -0.93
USP54-213ENST00000481991 C1orf115Q9H7X2 142 aa9.23□□□□□ -0.93
USP54-213ENST00000481991 SUGCTQ9HAC7 445 aa9.23□□□□□ -0.93
USP54-213ENST00000481991 LMCD1Q9NZU5 365 aa9.23□□□□□ -0.93
USP54-213ENST00000481991 ASTN1O14525 1302 aa9.23□□□□□ -0.93
USP54-213ENST00000481991 LRRC37A2A6NM11 1700 aa9.22□□□□□ -0.93
USP54-213ENST00000481991 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.22□□□□□ -0.93
USP54-213ENST00000481991 GRXCR2A6NFK2 248 aa9.22□□□□□ -0.93
USP54-213ENST00000481991 ST18O60284 1047 aa9.22□□□□□ -0.93
USP54-213ENST00000481991 LPXNO60711 386 aa9.22□□□□□ -0.93
USP54-213ENST00000481991 RFC2P35250 354 aa9.22□□□□□ -0.93
USP54-213ENST00000481991 NBPF20Q3BBV1 942 aa9.22□□□□□ -0.93
USP54-213ENST00000481991 SLFNL1Q499Z3 407 aa9.22□□□□□ -0.93
USP54-213ENST00000481991 FBXO16Q8IX29 292 aaPredicted RBP9.22□□□□□ -0.93
USP54-213ENST00000481991 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.22□□□□□ -0.93
USP54-213ENST00000481991 VWCEQ96DN2 955 aa9.22□□□□□ -0.93
USP54-213ENST00000481991 TGS1Q96RS0 853 aaKnown RBP9.22□□□□□ -0.93
USP54-213ENST00000481991 UPF3BQ9BZI7 483 aaKnown RBP9.22□□□□□ -0.93
USP54-213ENST00000481991 KCNH6Q9H252 994 aa9.22□□□□□ -0.93
USP54-213ENST00000481991 POLR3EQ9NVU0 708 aa9.22□□□□□ -0.93
USP54-213ENST00000481991 GNEQ9Y223 722 aaKnown RBP9.22□□□□□ -0.93
USP54-213ENST00000481991 XIRP2A4UGR9 3374 aa9.22□□□□□ -0.93
USP54-213ENST00000481991 SOWAHBA6NEL2 793 aa9.21□□□□□ -0.94
USP54-213ENST00000481991 ZNF316A6NFI3 1004 aaPredicted RBP9.21□□□□□ -0.94
USP54-213ENST00000481991 MBD4O95243 580 aa9.21□□□□□ -0.94
USP54-213ENST00000481991 NDUFB10O96000 172 aa9.21□□□□□ -0.94
USP54-213ENST00000481991 ALAS1P13196 640 aa9.21□□□□□ -0.94
USP54-213ENST00000481991 SNAP25P60880 206 aa9.21□□□□□ -0.94
USP54-213ENST00000481991 BFSP2Q13515 415 aa9.21□□□□□ -0.94
USP54-213ENST00000481991 PUS10Q3MIT2 529 aaKnown RBP9.21□□□□□ -0.94
USP54-213ENST00000481991 BRDTQ58F21 947 aaPredicted RBP9.21□□□□□ -0.94
USP54-213ENST00000481991 C12orf60Q5U649 245 aa9.21□□□□□ -0.94
USP54-213ENST00000481991 OR6J1Q8NGC5 347 aa9.21□□□□□ -0.94
USP54-213ENST00000481991 FGD4Q96M96 766 aa9.21□□□□□ -0.94
USP54-213ENST00000481991 TRERF1Q96PN7 1200 aa9.21□□□□□ -0.94
USP54-213ENST00000481991 WDR11Q9BZH6 1224 aa9.21□□□□□ -0.94
USP54-213ENST00000481991 ACAD9Q9H845 621 aa9.21□□□□□ -0.94
USP54-213ENST00000481991 ATP8A2Q9NTI2 1148 aa9.21□□□□□ -0.94
USP54-213ENST00000481991 FEM1BQ9UK73 627 aa9.21□□□□□ -0.94
USP54-213ENST00000481991 TNNQ9UQP3 1299 aa9.21□□□□□ -0.94
USP54-213ENST00000481991 FAM50BQ9Y247 325 aa9.21□□□□□ -0.94
USP54-213ENST00000481991 SLC4A4Q9Y6R1 1079 aa9.21□□□□□ -0.94
USP54-213ENST00000481991 MYO5AQ9Y4I1 1855 aaKnown RBP9.21□□□□□ -0.94
USP54-213ENST00000481991 COL11A1P12107 1806 aaPredicted RBP9.2□□□□□ -0.94
USP54-213ENST00000481991 FOCADQ5VW36 1801 aa9.2□□□□□ -0.94
USP54-213ENST00000481991 PIEZO1Q92508 2521 aa9.2□□□□□ -0.94
USP54-213ENST00000481991 MINDY4BA8MYZ0 360 aa9.2□□□□□ -0.94
USP54-213ENST00000481991 TMEM232C9JQI7 657 aa9.2□□□□□ -0.94
USP54-213ENST00000481991 RARSP54136 660 aaKnown RBP9.2□□□□□ -0.94
USP54-213ENST00000481991 DEFB103AP81534 67 aa9.2□□□□□ -0.94
USP54-213ENST00000481991 POLA2Q14181 598 aa9.2□□□□□ -0.94
USP54-213ENST00000481991 CLUL1Q15846 466 aa9.2□□□□□ -0.94
USP54-213ENST00000481991 TMED8Q6PL24 325 aaPredicted RBP9.2□□□□□ -0.94
USP54-213ENST00000481991 NSMFQ6X4W1 530 aa9.2□□□□□ -0.94
USP54-213ENST00000481991 C16orf86Q6ZW13 317 aa9.2□□□□□ -0.94
USP54-213ENST00000481991 ZNF444Q8N0Y2 327 aaPredicted RBP9.2□□□□□ -0.94
USP54-213ENST00000481991 FBXO22Q8NEZ5 403 aa9.2□□□□□ -0.94
USP54-213ENST00000481991 ARHGAP45Q92619 1136 aa9.2□□□□□ -0.94
USP54-213ENST00000481991 RAD9AQ99638 391 aa9.2□□□□□ -0.94
USP54-213ENST00000481991 MTG1Q9BT17 334 aaPredicted RBP9.2□□□□□ -0.94
USP54-213ENST00000481991 KATNBL1Q9H079 304 aa9.2□□□□□ -0.94
USP54-213ENST00000481991 IL1RAPL2Q9NP60 686 aa9.2□□□□□ -0.94
USP54-213ENST00000481991 RNF146Q9NTX7 359 aa9.2□□□□□ -0.94
USP54-213ENST00000481991 MTMR7Q9Y216 660 aa9.2□□□□□ -0.94
USP54-213ENST00000481991 POTEB3A0JP26 581 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 ATP2A1O14983 1001 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 BAIAP3O94812 1187 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 CPT1AP50416 773 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 PTPN5P54829 565 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 WDR5P61964 334 aaKnown RBP9.19□□□□□ -0.94
USP54-213ENST00000481991 NKX3-2P78367 333 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 PTGISQ16647 500 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 PTPROQ16827 1216 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 IER5LQ5T953 404 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 TAPT1Q6NXT6 567 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 CTR9Q6PD62 1173 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 POTEBQ6S5H4 581 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 CCDC155Q8N6L0 562 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 SSH3Q8TE77 659 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms