RNA–Protein interactions for RNA: ENST00000480563.1

TTC28-206, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 407 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-206ENST00000480563 ACAD9Q9H845 621 aa13.5□□□□□ -0.25
TTC28-206ENST00000480563 A1CFQ9NQ94 594 aaKnown RBP13.5□□□□□ -0.25
TTC28-206ENST00000480563 RFXAPO00287 272 aa13.49□□□□□ -0.25
TTC28-206ENST00000480563 FDX1P10109 184 aa13.49□□□□□ -0.25
TTC28-206ENST00000480563 BMP3P12645 472 aa13.49□□□□□ -0.25
TTC28-206ENST00000480563 POU3F3P20264 500 aaPredicted RBP13.49□□□□□ -0.25
TTC28-206ENST00000480563 HOXD11P31277 338 aaPredicted RBP13.49□□□□□ -0.25
TTC28-206ENST00000480563 TMEM67Q5HYA8 995 aa13.49□□□□□ -0.25
TTC28-206ENST00000480563 SLFN13Q68D06 897 aa13.49□□□□□ -0.25
TTC28-206ENST00000480563 IQSEC1Q6DN90 963 aa13.49□□□□□ -0.25
TTC28-206ENST00000480563 GIMAP6Q6P9H5 292 aa13.49□□□□□ -0.25
TTC28-206ENST00000480563 LRRC47Q8N1G4 583 aaKnown RBP13.49□□□□□ -0.25
TTC28-206ENST00000480563 GMCL1P1Q8NEA9 526 aa13.49□□□□□ -0.25
TTC28-206ENST00000480563 CEP95Q96GE4 821 aa13.49□□□□□ -0.25
TTC28-206ENST00000480563 AGBL1Q96MI9 1066 aa13.49□□□□□ -0.25
TTC28-206ENST00000480563 PDGFCQ9NRA1 345 aa13.49□□□□□ -0.25
TTC28-206ENST00000480563 RNF146Q9NTX7 359 aa13.49□□□□□ -0.25
TTC28-206ENST00000480563 MTMR4Q9NYA4 1195 aa13.49□□□□□ -0.25
TTC28-206ENST00000480563 SYNPO2Q9UMS6 1093 aa13.49□□□□□ -0.25
TTC28-206ENST00000480563 COG6Q9Y2V7 657 aa13.49□□□□□ -0.25
TTC28-206ENST00000480563 MTCH2Q9Y6C9 303 aa13.49□□□□□ -0.25
TTC28-206ENST00000480563 CHD7Q9P2D1 2997 aa13.48□□□□□ -0.25
TTC28-206ENST00000480563 TMEM232C9JQI7 657 aa13.48□□□□□ -0.25
TTC28-206ENST00000480563 GTPBP6O43824 516 aaPredicted RBP13.48□□□□□ -0.25
TTC28-206ENST00000480563 PRDM1O75626 825 aa13.48□□□□□ -0.25
TTC28-206ENST00000480563 TTLL1O95922 423 aa13.48□□□□□ -0.25
TTC28-206ENST00000480563 TTLL4Q14679 1199 aa13.48□□□□□ -0.25
TTC28-206ENST00000480563 TMEM63BQ5T3F8 832 aa13.48□□□□□ -0.25
TTC28-206ENST00000480563 TAPT1Q6NXT6 567 aa13.48□□□□□ -0.25
TTC28-206ENST00000480563 EEPD1Q7L9B9 569 aa13.48□□□□□ -0.25
TTC28-206ENST00000480563 ALDH8A1Q9H2A2 487 aaPredicted RBP13.48□□□□□ -0.25
TTC28-206ENST00000480563 EPHX3Q9H6B9 360 aa13.48□□□□□ -0.25
TTC28-206ENST00000480563 CERS4Q9HA82 394 aa13.48□□□□□ -0.25
TTC28-206ENST00000480563 ZNF287Q9HBT7 754 aa13.48□□□□□ -0.25
TTC28-206ENST00000480563 ISY1Q9ULR0 285 aaKnown RBP13.48□□□□□ -0.25
TTC28-206ENST00000480563 Q9Y3F1 56 aa13.48□□□□□ -0.25
TTC28-206ENST00000480563 DDX49Q9Y6V7 483 aaKnown RBP13.48□□□□□ -0.25
TTC28-206ENST00000480563 CA3P07451 260 aa13.47□□□□□ -0.25
TTC28-206ENST00000480563 PFKMP08237 780 aa13.47□□□□□ -0.25
TTC28-206ENST00000480563 SUPT20HL2P0C7V6 817 aa13.47□□□□□ -0.25
TTC28-206ENST00000480563 STAT2P52630 851 aa13.47□□□□□ -0.25
TTC28-206ENST00000480563 TKFCQ3LXA3 575 aa13.47□□□□□ -0.25
TTC28-206ENST00000480563 DEFB128Q7Z7B8 93 aa13.47□□□□□ -0.25
TTC28-206ENST00000480563 CHURC1Q8WUH1 139 aa13.47□□□□□ -0.25
TTC28-206ENST00000480563 TRERF1Q96PN7 1200 aa13.47□□□□□ -0.25
TTC28-206ENST00000480563 LRFN3Q9BTN0 628 aa13.47□□□□□ -0.25
TTC28-206ENST00000480563 COG5Q9UP83 839 aa13.47□□□□□ -0.25
TTC28-206ENST00000480563 MCM3APO60318 1980 aa13.47□□□□□ -0.25
TTC28-206ENST00000480563 TCF20Q9UGU0 1960 aaKnown RBP13.47□□□□□ -0.25
TTC28-206ENST00000480563 ZNF536O15090 1300 aa13.46□□□□□ -0.25
TTC28-206ENST00000480563 CYP2C9P11712 490 aa13.46□□□□□ -0.25
TTC28-206ENST00000480563 ALAS1P13196 640 aa13.46□□□□□ -0.25
TTC28-206ENST00000480563 TDO2P48775 406 aa13.46□□□□□ -0.25
TTC28-206ENST00000480563 IKQ13123 557 aaPredicted RBP13.46□□□□□ -0.25
TTC28-206ENST00000480563 KIAA1211Q6ZU35 1233 aa13.46□□□□□ -0.25
TTC28-206ENST00000480563 FAM160B2Q86V87 743 aa13.46□□□□□ -0.25
TTC28-206ENST00000480563 FBXO16Q8IX29 292 aaPredicted RBP13.46□□□□□ -0.25
TTC28-206ENST00000480563 STAG1Q8WVM7 1258 aa13.46□□□□□ -0.25
TTC28-206ENST00000480563 OSBP2Q969R2 916 aa13.46□□□□□ -0.25
TTC28-206ENST00000480563 CHMP4CQ96CF2 233 aa13.46□□□□□ -0.25
TTC28-206ENST00000480563 TRMT13Q9NUP7 481 aaKnown RBP13.46□□□□□ -0.25
TTC28-206ENST00000480563 HCN4Q9Y3Q4 1203 aa13.46□□□□□ -0.25
TTC28-206ENST00000480563 ARIH1Q9Y4X5 557 aaPredicted RBP13.46□□□□□ -0.25
TTC28-206ENST00000480563 GREB1LQ9C091 1923 aaPredicted RBP13.46□□□□□ -0.25
TTC28-206ENST00000480563 TNKSO95271 1327 aa13.45□□□□□ -0.26
TTC28-206ENST00000480563 EPOPA6NHQ4 379 aa13.45□□□□□ -0.26
TTC28-206ENST00000480563 TLL1O43897 1013 aa13.45□□□□□ -0.26
TTC28-206ENST00000480563 APPP05067 770 aa13.45□□□□□ -0.26
TTC28-206ENST00000480563 ACTN1P12814 892 aa13.45□□□□□ -0.26
TTC28-206ENST00000480563 KRT40Q6A162 431 aa13.45□□□□□ -0.26
TTC28-206ENST00000480563 NEDD1Q8NHV4 660 aa13.45□□□□□ -0.26
TTC28-206ENST00000480563 ARNTL2Q8WYA1 636 aa13.45□□□□□ -0.26
TTC28-206ENST00000480563 GMCL1Q96IK5 515 aa13.45□□□□□ -0.26
TTC28-206ENST00000480563 EPB41L4AQ9HCS5 686 aaPredicted RBP13.45□□□□□ -0.26
TTC28-206ENST00000480563 VTA1Q9NP79 307 aa13.45□□□□□ -0.26
TTC28-206ENST00000480563 ZBTB40Q9NUA8 1239 aa13.45□□□□□ -0.26
TTC28-206ENST00000480563 POLR3EQ9NVU0 708 aa13.45□□□□□ -0.26
TTC28-206ENST00000480563 CYP39A1Q9NYL5 469 aa13.45□□□□□ -0.26
TTC28-206ENST00000480563 GBF1Q92538 1859 aa13.44□□□□□ -0.26
TTC28-206ENST00000480563 PRRC2BQ5JSZ5 2229 aaKnown RBP13.44□□□□□ -0.26
TTC28-206ENST00000480563 GPAA1O43292 621 aa13.44□□□□□ -0.26
TTC28-206ENST00000480563 TSPY3P0CV98 308 aa13.44□□□□□ -0.26
TTC28-206ENST00000480563 TSPY8P0CW00 308 aa13.44□□□□□ -0.26
TTC28-206ENST00000480563 MS4A1P11836 297 aa13.44□□□□□ -0.26
TTC28-206ENST00000480563 GNAT2P19087 354 aa13.44□□□□□ -0.26
TTC28-206ENST00000480563 MCCP23508 829 aa13.44□□□□□ -0.26
TTC28-206ENST00000480563 SLC1A4P43007 532 aa13.44□□□□□ -0.26
TTC28-206ENST00000480563 SNAP25P60880 206 aa13.44□□□□□ -0.26
TTC28-206ENST00000480563 MUM1L1Q5H9M0 696 aa13.44□□□□□ -0.26
TTC28-206ENST00000480563 TMEM31Q5JXX7 168 aa13.44□□□□□ -0.26
TTC28-206ENST00000480563 KBTBD3Q8NAB2 608 aa13.44□□□□□ -0.26
TTC28-206ENST00000480563 PHOSPHO2Q8TCD6 241 aa13.44□□□□□ -0.26
TTC28-206ENST00000480563 APPBP2Q92624 585 aa13.44□□□□□ -0.26
TTC28-206ENST00000480563 HLA-CQ95604 372 aa13.44□□□□□ -0.26
TTC28-206ENST00000480563 PURBQ96QR8 312 aaKnown RBP13.44□□□□□ -0.26
TTC28-206ENST00000480563 SLC9A7Q96T83 725 aa13.44□□□□□ -0.26
TTC28-206ENST00000480563 PATL2C9JE40 543 aaKnown RBP13.43□□□□□ -0.26
TTC28-206ENST00000480563 TRANK1O15050 2925 aa13.43□□□□□ -0.26
TTC28-206ENST00000480563 RNF113AO15541 343 aaKnown RBP13.43□□□□□ -0.26
TTC28-206ENST00000480563 PLA2G6O60733 806 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms