RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 KIAA0825Q8IV33 1275 aa9.65□□□□□ -0.86
SYNE1-224ENST00000478916 FNBP4Q8N3X1 1017 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-224ENST00000478916 DEPTORQ8TB45 409 aa9.65□□□□□ -0.86
SYNE1-224ENST00000478916 SEMA3EO15041 775 aa9.65□□□□□ -0.86
SYNE1-224ENST00000478916 KRT19P08727 400 aa9.65□□□□□ -0.86
SYNE1-224ENST00000478916 FAM47AQ5JRC9 791 aa9.65□□□□□ -0.86
SYNE1-224ENST00000478916 HYOU1Q9Y4L1 999 aa9.65□□□□□ -0.86
SYNE1-224ENST00000478916 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.65□□□□□ -0.86
SYNE1-224ENST00000478916 H0YCG3 227 aa9.65□□□□□ -0.87
SYNE1-224ENST00000478916 MAP3K7O43318 606 aa9.65□□□□□ -0.87
SYNE1-224ENST00000478916 ZNF500O60304 480 aaPredicted RBP9.65□□□□□ -0.87
SYNE1-224ENST00000478916 ICA1Q05084 483 aa9.65□□□□□ -0.87
SYNE1-224ENST00000478916 IFT88Q13099 833 aa9.65□□□□□ -0.87
SYNE1-224ENST00000478916 E2F5Q15329 346 aa9.65□□□□□ -0.87
SYNE1-224ENST00000478916 DOK7Q18PE1 504 aa9.65□□□□□ -0.87
SYNE1-224ENST00000478916 MUM1L1Q5H9M0 696 aa9.65□□□□□ -0.87
SYNE1-224ENST00000478916 CCDC84Q86UT8 332 aaPredicted RBP9.65□□□□□ -0.87
SYNE1-224ENST00000478916 CCDC68Q9H2F9 335 aa9.65□□□□□ -0.87
SYNE1-224ENST00000478916 ZNF804BA4D1E1 1349 aa9.65□□□□□ -0.87
SYNE1-224ENST00000478916 PNMA6EA0A0J9YXQ4 647 aa9.65□□□□□ -0.87
SYNE1-224ENST00000478916 TESPA1A2RU30 521 aaPredicted RBP9.65□□□□□ -0.87
SYNE1-224ENST00000478916 SKIP12755 728 aa9.65□□□□□ -0.87
SYNE1-224ENST00000478916 IL6STP40189 918 aaPredicted RBP9.65□□□□□ -0.87
SYNE1-224ENST00000478916 CHRNDQ07001 517 aa9.65□□□□□ -0.87
SYNE1-224ENST00000478916 RSBN1LQ6PCB5 846 aaPredicted RBP9.65□□□□□ -0.87
SYNE1-224ENST00000478916 ZBTB8OSQ8IWT0 167 aa9.65□□□□□ -0.87
SYNE1-224ENST00000478916 LEMD3Q9Y2U8 911 aa9.65□□□□□ -0.87
SYNE1-224ENST00000478916 MYOM2P54296 1465 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 A0A087WUV0 522 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-224ENST00000478916 SMCO2A6NFE2 343 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 KRIT1O00522 736 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 TRIM37O94972 964 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 ZNF202O95125 648 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 TAF11Q15544 211 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 TSC22D3Q99576 134 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 NCOA5Q9HCD5 579 aaKnown RBP9.64□□□□□ -0.87
SYNE1-224ENST00000478916 ATP8B1O43520 1251 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 LMNB2Q03252 620 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 CABP7Q86V35 215 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 YY1AP1Q9H869 796 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 SCHIP1Q9P0W5 487 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-224ENST00000478916 PPME1Q9Y570 386 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 NUB1Q9Y5A7 615 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 THAP12O43422 761 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 CPA1P15085 419 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 GYG1P46976 350 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 SLFN12Q8IYM2 578 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 ANKRD35Q8N283 1001 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 ALAS1P13196 640 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 SCNN1DP51172 638 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 MYL10Q9BUA6 226 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 TAB2Q9NYJ8 693 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 CD2APQ9Y5K6 639 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 PCP11498 1178 aaKnown RBP9.64□□□□□ -0.87
SYNE1-224ENST00000478916 METTL13Q8N6R0 699 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 TSC1Q92574 1164 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 MAPK8IP1Q9UQF2 711 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 ANKARQ7Z5J8 1434 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 CFAP65Q6ZU64 1925 aaKnown RBP9.64□□□□□ -0.87
SYNE1-224ENST00000478916 E7EWF7 191 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 ATF7P17544 494 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-224ENST00000478916 IL9RQ01113 521 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 POSTNQ15063 836 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 KRT40Q6A162 431 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 JPH2Q9BR39 696 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-224ENST00000478916 JRKLQ9Y4A0 524 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 MRFAP1Q9Y605 127 aa9.64□□□□□ -0.87
SYNE1-224ENST00000478916 USP17L12C9JPN9 530 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 USP17L21D6R901 530 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 USP14P54578 494 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 CDR2Q01850 454 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 KRT26Q7Z3Y9 468 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 NCAPG2Q86XI2 1143 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 TPH2Q8IWU9 490 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 NELFBQ8WX92 580 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 EFHD1Q9BUP0 239 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 PSTPIP2Q9H939 334 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 NFE2L3Q9Y4A8 694 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 ATP7BP35670 1465 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 MAN1A2O60476 641 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 TYW1BQ6NUM6 668 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 SCYL1Q96KG9 808 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 PDE11AQ9HCR9 933 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 ANGPTL2Q9UKU9 493 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 GNA14O95837 355 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 GSTA1P08263 222 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 GSTA2P09210 222 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 OSBPP22059 807 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 CCDC92Q53HC0 331 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-224ENST00000478916 GRAMD4Q6IC98 578 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 GALNT17Q6IS24 598 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 PHKBQ93100 1093 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 TUBB6Q9BUF5 446 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 NBPF3Q9H094 633 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 ACTR5Q9H9F9 607 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-224ENST00000478916 MYO1AQ9UBC5 1043 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 ST13P4Q8IZP2 240 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-224ENST00000478916 TCP11Q8WWU5 503 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 CEP19Q96LK0 163 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 THRAP3Q9Y2W1 955 aaKnown RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms