RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 RCCD1A6NED2 376 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 GOLGA6DP0CG33 693 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 PDHBP11177 359 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 GNAT2P19087 354 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 STIM1Q13586 685 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 SPRED3Q2MJR0 410 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 MIEF2Q96C03 454 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 SLF1Q9BQI6 1058 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 GNL3LQ9NVN8 582 aaKnown RBP9.37□□□□□ -0.91
VAPB-205ENST00000476395 RBM28Q9NW13 759 aaKnown RBP9.37□□□□□ -0.91
VAPB-205ENST00000476395 GOLGA6AQ9NYA3 693 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 CTNND2Q9UQB3 1225 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 GDAQ9Y2T3 454 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 GOLGA6L9A6NEM1 432 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 INHBEP58166 350 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 HERVK_113P62684 666 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 LRCH2Q5VUJ6 765 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 HDAC7Q8WUI4 952 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 ARL8AQ96BM9 186 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 TRIM49BA6NDI0 452 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 TRIM75PA6NK02 468 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 SHOX2O60902 331 aaPredicted RBP9.37□□□□□ -0.91
VAPB-205ENST00000476395 ELF1P32519 619 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 KRT2P35908 639 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 CCT6AP40227 531 aaKnown RBP9.37□□□□□ -0.91
VAPB-205ENST00000476395 BIRC2Q13490 618 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 GIMAP7Q8NHV1 300 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 CTCFLQ8NI51 663 aaPredicted RBP9.37□□□□□ -0.91
VAPB-205ENST00000476395 FAM76AQ8TAV0 307 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 FAM107BQ9H098 131 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 GUCA1BQ9UMX6 200 aa9.37□□□□□ -0.91
VAPB-205ENST00000476395 ZEB2O60315 1214 aa9.36□□□□□ -0.91
VAPB-205ENST00000476395 AARSP49588 968 aaKnown RBP eCLIP9.36□□□□□ -0.91
VAPB-205ENST00000476395 APBA1Q02410 837 aa9.36□□□□□ -0.91
VAPB-205ENST00000476395 TCP11X2Q5H9J9 407 aa9.36□□□□□ -0.91
VAPB-205ENST00000476395 GPIHBP1Q8IV16 184 aa9.36□□□□□ -0.91
VAPB-205ENST00000476395 TRIM22Q8IYM9 498 aa9.36□□□□□ -0.91
VAPB-205ENST00000476395 COG1Q8WTW3 980 aa9.36□□□□□ -0.91
VAPB-205ENST00000476395 SELENOOQ9BVL4 669 aa9.36□□□□□ -0.91
VAPB-205ENST00000476395 NAA15Q9BXJ9 866 aaKnown RBP9.36□□□□□ -0.91
VAPB-205ENST00000476395 IL17RBQ9NRM6 502 aa9.36□□□□□ -0.91
VAPB-205ENST00000476395 NAV1Q8NEY1 1877 aa9.36□□□□□ -0.91
VAPB-205ENST00000476395 KAT6BQ8WYB5 2073 aa9.36□□□□□ -0.91
VAPB-205ENST00000476395 KIF1CO43896 1103 aaKnown RBP9.36□□□□□ -0.91
VAPB-205ENST00000476395 ATP1A1P05023 1023 aaKnown RBP9.36□□□□□ -0.91
VAPB-205ENST00000476395 CYP2D6P10635 497 aa9.36□□□□□ -0.91
VAPB-205ENST00000476395 CYP7A1P22680 504 aa9.36□□□□□ -0.91
VAPB-205ENST00000476395 CDC25CP30307 473 aa9.36□□□□□ -0.91
VAPB-205ENST00000476395 PRCPP42785 496 aa9.36□□□□□ -0.91
VAPB-205ENST00000476395 E2F5Q15329 346 aa9.36□□□□□ -0.91
VAPB-205ENST00000476395 CEP57Q86XR8 500 aa9.36□□□□□ -0.91
VAPB-205ENST00000476395 NAPGQ99747 312 aaPredicted RBP9.36□□□□□ -0.91
VAPB-205ENST00000476395 CAPS2Q9BXY5 557 aa9.36□□□□□ -0.91
VAPB-205ENST00000476395 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.36□□□□□ -0.91
VAPB-205ENST00000476395 SMARCAL1Q9NZC9 954 aa9.36□□□□□ -0.91
VAPB-205ENST00000476395 MCM8Q9UJA3 840 aa9.36□□□□□ -0.91
VAPB-205ENST00000476395 FLT1P17948 1338 aa9.36□□□□□ -0.91
VAPB-205ENST00000476395 EME2A4GXA9 379 aaPredicted RBP9.35□□□□□ -0.91
VAPB-205ENST00000476395 PP2D1A8MPX8 630 aa9.35□□□□□ -0.91
VAPB-205ENST00000476395 PDE2AO00408 941 aaPredicted RBP9.35□□□□□ -0.91
VAPB-205ENST00000476395 KANK3Q6NY19 840 aa9.35□□□□□ -0.91
VAPB-205ENST00000476395 MSL3Q8N5Y2 521 aaKnown RBP9.35□□□□□ -0.91
VAPB-205ENST00000476395 CABS1Q96KC9 395 aa9.35□□□□□ -0.91
VAPB-205ENST00000476395 FAM84BQ96KN1 310 aaPredicted RBP9.35□□□□□ -0.91
VAPB-205ENST00000476395 BRIP1Q9BX63 1249 aa9.35□□□□□ -0.91
VAPB-205ENST00000476395 RWDD2AQ9UIY3 292 aa9.35□□□□□ -0.91
VAPB-205ENST00000476395 MYO6Q9UM54 1294 aa9.35□□□□□ -0.91
VAPB-205ENST00000476395 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.35□□□□□ -0.91
VAPB-205ENST00000476395 MINDY4BA8MYZ0 360 aa9.35□□□□□ -0.91
VAPB-205ENST00000476395 BACH1O14867 736 aa9.35□□□□□ -0.91
VAPB-205ENST00000476395 EIF3HO15372 352 aaKnown RBP eCLIP9.35□□□□□ -0.91
VAPB-205ENST00000476395 CRKLP46109 303 aaKnown RBP9.35□□□□□ -0.91
VAPB-205ENST00000476395 COPB1P53618 953 aaKnown RBP9.35□□□□□ -0.91
VAPB-205ENST00000476395 TTC38Q5R3I4 469 aa9.35□□□□□ -0.91
VAPB-205ENST00000476395 FERMT2Q96AC1 680 aa9.35□□□□□ -0.91
VAPB-205ENST00000476395 PAIP2Q9BPZ3 127 aaKnown RBP9.35□□□□□ -0.91
VAPB-205ENST00000476395 FOCADQ5VW36 1801 aa9.35□□□□□ -0.91
VAPB-205ENST00000476395 EDIL3O43854 480 aa9.35□□□□□ -0.91
VAPB-205ENST00000476395 RPSAP08865 295 aaKnown RBP9.35□□□□□ -0.91
VAPB-205ENST00000476395 KLK7P49862 253 aa9.35□□□□□ -0.91
VAPB-205ENST00000476395 SEC24CP53992 1094 aa9.35□□□□□ -0.91
VAPB-205ENST00000476395 C2orf54Q08AI8 447 aa9.35□□□□□ -0.91
VAPB-205ENST00000476395 SF3A3Q12874 501 aaKnown RBP eCLIP9.35□□□□□ -0.91
VAPB-205ENST00000476395 TRAPPC11Q7Z392 1133 aa9.35□□□□□ -0.91
VAPB-205ENST00000476395 NSUN4Q96CB9 384 aaKnown RBP9.35□□□□□ -0.91
VAPB-205ENST00000476395 DNAJC7Q99615 494 aa9.35□□□□□ -0.91
VAPB-205ENST00000476395 TMEM60Q9H2L4 133 aa9.35□□□□□ -0.91
VAPB-205ENST00000476395 DACH1Q9UI36 760 aa9.35□□□□□ -0.91
VAPB-205ENST00000476395 UTRNP46939 3433 aa9.35□□□□□ -0.91
VAPB-205ENST00000476395 MAGEB6P1A0A0J9YX57 407 aa9.34□□□□□ -0.91
VAPB-205ENST00000476395 TTC26A0AVF1 554 aa9.34□□□□□ -0.91
VAPB-205ENST00000476395 NDUFAB1O14561 156 aa9.34□□□□□ -0.91
VAPB-205ENST00000476395 CCNHP51946 323 aaPredicted RBP9.34□□□□□ -0.91
VAPB-205ENST00000476395 USP14P54578 494 aa9.34□□□□□ -0.91
VAPB-205ENST00000476395 SLC7A5Q01650 507 aa9.34□□□□□ -0.91
VAPB-205ENST00000476395 SAFBQ15424 915 aaKnown RBP eCLIP9.34□□□□□ -0.91
VAPB-205ENST00000476395 TTMPQ5BVD1 217 aa9.34□□□□□ -0.91
VAPB-205ENST00000476395 TMCO4Q5TGY1 634 aa9.34□□□□□ -0.91
VAPB-205ENST00000476395 DUSP9Q99956 384 aaKnown RBP9.34□□□□□ -0.91
VAPB-205ENST00000476395 CRACR2AQ9BSW2 395 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms