RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 PFASO15067 1338 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 KLF18A0A0U1RQI7 1052 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 ERICH2A1L162 156 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 PPP1R11O60927 126 aaPredicted RBP8.15□□□□□ -1.1
LIMD1-204ENST00000474665 DDAH1O94760 285 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 PLEKHA8P1O95397 391 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 LARGE1O95461 756 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 PARP1P09874 1014 aaKnown RBP8.15□□□□□ -1.1
LIMD1-204ENST00000474665 PDIA3P30101 505 aaKnown RBP8.15□□□□□ -1.1
LIMD1-204ENST00000474665 CDC27P30260 824 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 GCLCP48506 637 aaPredicted RBP8.15□□□□□ -1.1
LIMD1-204ENST00000474665 NEK4P51957 841 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 AK2P54819 239 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 FCGRTP55899 365 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 ST3GAL1Q11201 340 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 PABPC4Q13310 644 aaKnown RBP eCLIP8.15□□□□□ -1.1
LIMD1-204ENST00000474665 GRIN2CQ14957 1233 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 FAM110CQ1W6H9 321 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 CCDC96Q2M329 555 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 SYDE2Q5VT97 1194 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 SAMD1Q6SPF0 538 aaPredicted RBP8.15□□□□□ -1.1
LIMD1-204ENST00000474665 CATIPQ7Z7H3 387 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 MICU3Q86XE3 530 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 CCDC144CPQ8IYA2 1237 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 CMTR1Q8N1G2 835 aaKnown RBP8.15□□□□□ -1.1
LIMD1-204ENST00000474665 TMTC2Q8N394 836 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 SRBD1Q8N5C6 995 aaKnown RBP8.15□□□□□ -1.1
LIMD1-204ENST00000474665 PRPF38AQ8NAV1 312 aaKnown RBP8.15□□□□□ -1.1
LIMD1-204ENST00000474665 FANCBQ8NB91 859 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 PXYLP1Q8TE99 480 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 SMCR8Q8TEV9 937 aaPredicted RBP8.15□□□□□ -1.1
LIMD1-204ENST00000474665 NUP133Q8WUM0 1156 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 MTMR8Q96EF0 704 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 MAP3K14Q99558 947 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 JMJD4Q9H9V9 463 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 HOXC10Q9NYD6 342 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 FEM1BQ9UK73 627 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 PNMA3Q9UL41 463 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 RABGAP1Q9Y3P9 1069 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 RIPK3Q9Y572 518 aa8.15□□□□□ -1.1
LIMD1-204ENST00000474665 MCM3APO60318 1980 aa8.15□□□□□ -1.11
LIMD1-204ENST00000474665 LCTP09848 1927 aa8.15□□□□□ -1.11
LIMD1-204ENST00000474665 CCDC69A6NI79 296 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 KLRF2D3W0D1 207 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 ATP2A1O14983 1001 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 DTNBO60941 627 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 ADD1P35611 737 aaKnown RBP8.14□□□□□ -1.11
LIMD1-204ENST00000474665 STAT2P52630 851 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 ERVK-9P63128 1117 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 ERVK-24P63145 666 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 MRPS5P82675 430 aaKnown RBP8.14□□□□□ -1.11
LIMD1-204ENST00000474665 NTRK3Q16288 839 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 LRRC26Q2I0M4 334 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 ASPRV1Q53RT3 343 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 TMEM31Q5JXX7 168 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 C9orf50Q5SZB4 431 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 GPATCH4Q5T3I0 446 aaKnown RBP8.14□□□□□ -1.11
LIMD1-204ENST00000474665 NFXL1Q6ZNB6 911 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 TMTC3Q6ZXV5 915 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 FAM160B2Q86V87 743 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 ADGRF4Q8IZF3 695 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 CHURC1Q8WUH1 139 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 KIFC2Q96AC6 838 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 AGBL1Q96MI9 1066 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 LBHD1Q9BQE6 289 aaPredicted RBP8.14□□□□□ -1.11
LIMD1-204ENST00000474665 PAGR1Q9BTK6 254 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 MOV10L1Q9BXT6 1211 aaKnown RBP8.14□□□□□ -1.11
LIMD1-204ENST00000474665 SPATC1LQ9H0A9 340 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 RANBP17Q9H2T7 1088 aaKnown RBP8.14□□□□□ -1.11
LIMD1-204ENST00000474665 RIOX1Q9H6W3 641 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 NCOA5Q9HCD5 579 aaKnown RBP8.14□□□□□ -1.11
LIMD1-204ENST00000474665 SLC12A7Q9Y666 1083 aa8.14□□□□□ -1.11
LIMD1-204ENST00000474665 hCG_1642624A0A1W2PR95 340 aa8.13□□□□□ -1.11
LIMD1-204ENST00000474665 GOLGA8BA8MQT2 603 aa8.13□□□□□ -1.11
LIMD1-204ENST00000474665 ZBTB43O43298 467 aa8.13□□□□□ -1.11
LIMD1-204ENST00000474665 RCAN1P53805 252 aa8.13□□□□□ -1.11
LIMD1-204ENST00000474665 RABEP1Q15276 862 aa8.13□□□□□ -1.11
LIMD1-204ENST00000474665 ME3Q16798 604 aa8.13□□□□□ -1.11
LIMD1-204ENST00000474665 MB21D1Q8N884 522 aa8.13□□□□□ -1.11
LIMD1-204ENST00000474665 GPRC5AQ8NFJ5 357 aa8.13□□□□□ -1.11
LIMD1-204ENST00000474665 ZNF274Q96GC6 653 aaPredicted RBP8.13□□□□□ -1.11
LIMD1-204ENST00000474665 RAVER2Q9HCJ3 691 aaKnown RBP8.13□□□□□ -1.11
LIMD1-204ENST00000474665 THEGQ9P2T0 379 aa8.13□□□□□ -1.11
LIMD1-204ENST00000474665 GJD2Q9UKL4 321 aa8.13□□□□□ -1.11
LIMD1-204ENST00000474665 CDH23Q9H251 3354 aa8.13□□□□□ -1.11
LIMD1-204ENST00000474665 CNTNAP5Q8WYK1 1306 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 BDP1A6H8Y1 2624 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 FAM86C2PA6NEL3 165 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 GOLGA8AA7E2F4 631 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 OPLAHO14841 1288 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 PFKFB2O60825 505 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 PPFIA3O75145 1194 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 CTDNEP1O95476 244 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 CALM1P0DP23 149 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 CALM2P0DP24 149 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 CALM3P0DP25 149 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 ERCC3P19447 782 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 STAT3P40763 770 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 CCT2P78371 535 aaKnown RBP8.12□□□□□ -1.11
LIMD1-204ENST00000474665 SMAD3P84022 425 aaKnown RBP8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms