RNA–Protein interactions for RNA: ENST00000473854.5

CCDC39-203, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 487 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-203ENST00000473854 SLC9A5Q14940 896 aa4.17□□□□□ -1.74
CCDC39-203ENST00000473854 ARSHQ5FYA8 562 aa4.17□□□□□ -1.74
CCDC39-203ENST00000473854 CWF19L1Q69YN2 538 aaKnown RBP4.17□□□□□ -1.74
CCDC39-203ENST00000473854 SEMA4AQ9H3S1 761 aa4.17□□□□□ -1.74
CCDC39-203ENST00000473854 NUDT5Q9UKK9 219 aa4.17□□□□□ -1.74
CCDC39-203ENST00000473854 INVSQ9Y283 1065 aa4.17□□□□□ -1.74
CCDC39-203ENST00000473854 PRPF40AO75400 957 aaKnown RBP4.16□□□□□ -1.74
CCDC39-203ENST00000473854 F13A1P00488 732 aa4.16□□□□□ -1.74
CCDC39-203ENST00000473854 CEBPAP49715 358 aaPredicted RBP4.16□□□□□ -1.74
CCDC39-203ENST00000473854 PWP1Q13610 501 aa4.16□□□□□ -1.74
CCDC39-203ENST00000473854 RGL3Q3MIN7 710 aa4.16□□□□□ -1.74
CCDC39-203ENST00000473854 ZBTB8AQ96BR9 441 aa4.16□□□□□ -1.74
CCDC39-203ENST00000473854 KLC2Q9H0B6 622 aa4.16□□□□□ -1.74
CCDC39-203ENST00000473854 ST6GALNAC2Q9UJ37 374 aa4.16□□□□□ -1.74
CCDC39-203ENST00000473854 POLR3KQ9Y2Y1 108 aaPredicted RBP4.16□□□□□ -1.74
CCDC39-203ENST00000473854 MROH6A6NGR9 719 aa4.15□□□□□ -1.75
CCDC39-203ENST00000473854 MEIS1O00470 390 aa4.15□□□□□ -1.75
CCDC39-203ENST00000473854 DNAJA2O60884 412 aa4.15□□□□□ -1.75
CCDC39-203ENST00000473854 ZBTB7AO95365 584 aa4.15□□□□□ -1.75
CCDC39-203ENST00000473854 PMLP29590 882 aa4.15□□□□□ -1.75
CCDC39-203ENST00000473854 MC3RP41968 323 aa4.15□□□□□ -1.75
CCDC39-203ENST00000473854 CTSKP43235 329 aa4.15□□□□□ -1.75
CCDC39-203ENST00000473854 CACNB2Q08289 660 aaPredicted RBP4.15□□□□□ -1.75
CCDC39-203ENST00000473854 TAF1CQ15572 869 aaPredicted RBP4.15□□□□□ -1.75
CCDC39-203ENST00000473854 SMN1Q16637 294 aaKnown RBP4.15□□□□□ -1.75
CCDC39-203ENST00000473854 REC114Q7Z4M0 266 aa4.15□□□□□ -1.75
CCDC39-203ENST00000473854 USP48Q86UV5 1035 aa4.15□□□□□ -1.75
CCDC39-203ENST00000473854 LINC00482Q8N8I6 264 aa4.15□□□□□ -1.75
CCDC39-203ENST00000473854 TMEM52Q8NDY8 209 aa4.15□□□□□ -1.75
CCDC39-203ENST00000473854 NLGN2Q8NFZ4 835 aa4.15□□□□□ -1.75
CCDC39-203ENST00000473854 SMARCC2Q8TAQ2 1214 aa4.15□□□□□ -1.75
CCDC39-203ENST00000473854 PEX11GQ96HA9 241 aa4.15□□□□□ -1.75
CCDC39-203ENST00000473854 DSCC1Q9BVC3 393 aa4.15□□□□□ -1.75
CCDC39-203ENST00000473854 SSBP3Q9BWW4 388 aaPredicted RBP4.15□□□□□ -1.75
CCDC39-203ENST00000473854 MKRN2Q9H000 416 aaKnown RBP4.15□□□□□ -1.75
CCDC39-203ENST00000473854 SPATA6Q9NWH7 488 aaPredicted RBP4.15□□□□□ -1.75
CCDC39-203ENST00000473854 GFOD1Q9NXC2 390 aa4.15□□□□□ -1.75
CCDC39-203ENST00000473854 FBXL21Q9UKT6 434 aa4.15□□□□□ -1.75
CCDC39-203ENST00000473854 HCFC2Q9Y5Z7 792 aa4.15□□□□□ -1.75
CCDC39-203ENST00000473854 LAMTOR5O43504 91 aa4.14□□□□□ -1.75
CCDC39-203ENST00000473854 TBC1D8O95759 1140 aa4.14□□□□□ -1.75
CCDC39-203ENST00000473854 PF4P02776 101 aa4.14□□□□□ -1.75
CCDC39-203ENST00000473854 P4HBP07237 508 aaKnown RBP4.14□□□□□ -1.75
CCDC39-203ENST00000473854 GSTM1P09488 218 aa4.14□□□□□ -1.75
CCDC39-203ENST00000473854 CYP2C8P10632 490 aa4.14□□□□□ -1.75
CCDC39-203ENST00000473854 RPL13P26373 211 aaKnown RBP4.14□□□□□ -1.75
CCDC39-203ENST00000473854 NOP2P46087 812 aaKnown RBP4.14□□□□□ -1.75
CCDC39-203ENST00000473854 INHBEP58166 350 aa4.14□□□□□ -1.75
CCDC39-203ENST00000473854 CDSNQ15517 529 aa4.14□□□□□ -1.75
CCDC39-203ENST00000473854 RTP2Q5QGT7 225 aa4.14□□□□□ -1.75
CCDC39-203ENST00000473854 CDCP2Q5VXM1 449 aa4.14□□□□□ -1.75
CCDC39-203ENST00000473854 CRTC3Q6UUV7 619 aa4.14□□□□□ -1.75
CCDC39-203ENST00000473854 C11orf21Q9P2W6 132 aa4.14□□□□□ -1.75
CCDC39-203ENST00000473854 TCAF1Q9Y4C2 921 aa4.14□□□□□ -1.75
CCDC39-203ENST00000473854 HS3ST3A1Q9Y663 406 aa4.14□□□□□ -1.75
CCDC39-203ENST00000473854 WDR33Q9C0J8 1336 aaKnown RBP4.14□□□□□ -1.75
CCDC39-203ENST00000473854 AMHP03971 560 aa4.13□□□□□ -1.75
CCDC39-203ENST00000473854 SELENOPP49908 381 aa4.13□□□□□ -1.75
CCDC39-203ENST00000473854 CWF19L2Q2TBE0 894 aaKnown RBP4.13□□□□□ -1.75
CCDC39-203ENST00000473854 SNAP47Q5SQN1 464 aa4.13□□□□□ -1.75
CCDC39-203ENST00000473854 MEI1Q5TIA1 1274 aa4.13□□□□□ -1.75
CCDC39-203ENST00000473854 RELL1Q8IUW5 271 aa4.13□□□□□ -1.75
CCDC39-203ENST00000473854 NETO2Q8NC67 525 aa4.13□□□□□ -1.75
CCDC39-203ENST00000473854 SRRTQ9BXP5 876 aaKnown RBP4.13□□□□□ -1.75
CCDC39-203ENST00000473854 DEF6Q9H4E7 631 aa4.13□□□□□ -1.75
CCDC39-203ENST00000473854 ROBO2Q9HCK4 1378 aa4.13□□□□□ -1.75
CCDC39-203ENST00000473854 C9orf118A6NHY6 69 aa4.12□□□□□ -1.75
CCDC39-203ENST00000473854 FGF10O15520 208 aaPredicted RBP4.12□□□□□ -1.75
CCDC39-203ENST00000473854 GLI4P10075 376 aa4.12□□□□□ -1.75
CCDC39-203ENST00000473854 L1CAMP32004 1257 aa4.12□□□□□ -1.75
CCDC39-203ENST00000473854 KLF10Q13118 480 aa4.12□□□□□ -1.75
CCDC39-203ENST00000473854 AUHQ13825 339 aaKnown RBP4.12□□□□□ -1.75
CCDC39-203ENST00000473854 CIR1Q86X95 450 aaPredicted RBP4.12□□□□□ -1.75
CCDC39-203ENST00000473854 ZNF575Q86XF7 245 aa4.12□□□□□ -1.75
CCDC39-203ENST00000473854 LCORQ96JN0 433 aaPredicted RBP4.12□□□□□ -1.75
CCDC39-203ENST00000473854 RHOVQ96L33 236 aa4.12□□□□□ -1.75
CCDC39-203ENST00000473854 TMEM74Q96NL1 305 aa4.12□□□□□ -1.75
CCDC39-203ENST00000473854 NOX5Q96PH1 765 aa4.12□□□□□ -1.75
CCDC39-203ENST00000473854 SLC12A9Q9BXP2 914 aa4.12□□□□□ -1.75
CCDC39-203ENST00000473854 CNNM2Q9H8M5 875 aa4.12□□□□□ -1.75
CCDC39-203ENST00000473854 PLA2G2DQ9UNK4 145 aa4.12□□□□□ -1.75
CCDC39-203ENST00000473854 MINPP1Q9UNW1 487 aa4.12□□□□□ -1.75
CCDC39-203ENST00000473854 NPEPPSL1A6NEC2 478 aa4.11□□□□□ -1.75
CCDC39-203ENST00000473854 MUSKO15146 869 aa4.11□□□□□ -1.75
CCDC39-203ENST00000473854 ATE1O95260 518 aa4.11□□□□□ -1.75
CCDC39-203ENST00000473854 THBS2P35442 1172 aa4.11□□□□□ -1.75
CCDC39-203ENST00000473854 RGS19P49795 217 aa4.11□□□□□ -1.75
CCDC39-203ENST00000473854 FHL2Q14192 279 aa4.11□□□□□ -1.75
CCDC39-203ENST00000473854 OVOS1Q6IE37 1185 aa4.11□□□□□ -1.75
CCDC39-203ENST00000473854 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.11□□□□□ -1.75
CCDC39-203ENST00000473854 NLRC3Q7RTR2 1065 aa4.11□□□□□ -1.75
CCDC39-203ENST00000473854 LIMS2Q7Z4I7 341 aa4.11□□□□□ -1.75
CCDC39-203ENST00000473854 TTLL6Q8N841 843 aa4.11□□□□□ -1.75
CCDC39-203ENST00000473854 ZNF512BQ96KM6 892 aaPredicted RBP4.11□□□□□ -1.75
CCDC39-203ENST00000473854 RSRP1Q9BUV0 290 aa4.11□□□□□ -1.75
CCDC39-203ENST00000473854 TESMINQ9Y4I5 508 aa4.11□□□□□ -1.75
CCDC39-203ENST00000473854 TACR1P25103 407 aa4.1□□□□□ -1.75
CCDC39-203ENST00000473854 GBP2P32456 591 aaPredicted RBP4.1□□□□□ -1.75
CCDC39-203ENST00000473854 SMAD4Q13485 552 aaKnown RBP4.1□□□□□ -1.75
CCDC39-203ENST00000473854 ICAM4Q14773 271 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms