RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 BTNL9Q6UXG8 535 aa20.62■□□□□ 0.89
COL7A1-208ENST00000470076 RILPL2Q969X0 211 aa20.62■□□□□ 0.89
COL7A1-208ENST00000470076 TMEM47Q9BQJ4 181 aa20.62■□□□□ 0.89
COL7A1-208ENST00000470076 RANBP17Q9H2T7 1088 aaKnown RBP20.62■□□□□ 0.89
COL7A1-208ENST00000470076 CYP39A1Q9NYL5 469 aa20.62■□□□□ 0.89
COL7A1-208ENST00000470076 CDK7P50613 346 aa20.61■□□□□ 0.89
COL7A1-208ENST00000470076 IRX5P78411 483 aaPredicted RBP20.61■□□□□ 0.89
COL7A1-208ENST00000470076 SMAD3P84022 425 aaKnown RBP20.61■□□□□ 0.89
COL7A1-208ENST00000470076 FPGSQ05932 587 aa20.61■□□□□ 0.89
COL7A1-208ENST00000470076 VTI1AQ96AJ9 217 aa20.61■□□□□ 0.89
COL7A1-208ENST00000470076 TTC14Q96N46 770 aa20.61■□□□□ 0.89
COL7A1-208ENST00000470076 GUCD1Q96NT3 240 aa20.61■□□□□ 0.89
COL7A1-208ENST00000470076 CUL9Q8IWT3 2517 aa20.61■□□□□ 0.89
COL7A1-208ENST00000470076 A0A0U1RQG5 324 aaPredicted RBP20.6■□□□□ 0.89
COL7A1-208ENST00000470076 HAND2P61296 217 aa20.6■□□□□ 0.89
COL7A1-208ENST00000470076 AKNAD1Q5T1N1 836 aa20.6■□□□□ 0.89
COL7A1-208ENST00000470076 SYDE2Q5VT97 1194 aa20.6■□□□□ 0.89
COL7A1-208ENST00000470076 TTBK2Q6IQ55 1244 aa20.6■□□□□ 0.89
COL7A1-208ENST00000470076 B4GALNT3Q6L9W6 998 aa20.6■□□□□ 0.89
COL7A1-208ENST00000470076 NSMFQ6X4W1 530 aa20.6■□□□□ 0.89
COL7A1-208ENST00000470076 MFSD6Q6ZSS7 791 aa20.6■□□□□ 0.89
COL7A1-208ENST00000470076 NOL8Q76FK4 1167 aaKnown RBP20.6■□□□□ 0.89
COL7A1-208ENST00000470076 RNPC3Q96LT9 517 aaKnown RBP20.6■□□□□ 0.89
COL7A1-208ENST00000470076 OSBPL3Q9H4L5 887 aa20.6■□□□□ 0.89
COL7A1-208ENST00000470076 TBX21Q9UL17 535 aa20.6■□□□□ 0.89
COL7A1-208ENST00000470076 LRRC37A2A6NM11 1700 aa20.6■□□□□ 0.89
COL7A1-208ENST00000470076 ASTN1O14525 1302 aa20.59■□□□□ 0.89
COL7A1-208ENST00000470076 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.59■□□□□ 0.89
COL7A1-208ENST00000470076 ARVCFO00192 962 aa20.59■□□□□ 0.89
COL7A1-208ENST00000470076 CTAGE5O15320 804 aa20.59■□□□□ 0.89
COL7A1-208ENST00000470076 TIMP1P01033 207 aa20.59■□□□□ 0.89
COL7A1-208ENST00000470076 SDSP20132 328 aa20.59■□□□□ 0.89
COL7A1-208ENST00000470076 SLC16A2P36021 539 aa20.59■□□□□ 0.89
COL7A1-208ENST00000470076 EPHB4P54760 987 aa20.59■□□□□ 0.89
COL7A1-208ENST00000470076 CHD1LQ86WJ1 897 aa20.59■□□□□ 0.89
COL7A1-208ENST00000470076 FAM161BQ96MY7 647 aa20.59■□□□□ 0.89
COL7A1-208ENST00000470076 RNF41Q9H4P4 317 aaPredicted RBP20.59■□□□□ 0.89
COL7A1-208ENST00000470076 PNMA2Q9UL42 364 aa20.59■□□□□ 0.89
COL7A1-208ENST00000470076 GNEQ9Y223 722 aaKnown RBP20.59■□□□□ 0.89
COL7A1-208ENST00000470076 LCTP09848 1927 aa20.59■□□□□ 0.89
COL7A1-208ENST00000470076 PDHBP11177 359 aa20.58■□□□□ 0.89
COL7A1-208ENST00000470076 IQSEC1Q6DN90 963 aa20.58■□□□□ 0.89
COL7A1-208ENST00000470076 TLK2Q86UE8 772 aa20.58■□□□□ 0.89
COL7A1-208ENST00000470076 PLEKHM2Q8IWE5 1019 aa20.58■□□□□ 0.89
COL7A1-208ENST00000470076 AP5M1Q9H0R1 490 aa20.58■□□□□ 0.89
COL7A1-208ENST00000470076 VTA1Q9NP79 307 aa20.58■□□□□ 0.89
COL7A1-208ENST00000470076 GPCPD1Q9NPB8 672 aa20.58■□□□□ 0.89
COL7A1-208ENST00000470076 ADD3Q9UEY8 706 aaKnown RBP20.58■□□□□ 0.89
COL7A1-208ENST00000470076 FRMPD2Q68DX3 1309 aaPredicted RBP20.57■□□□□ 0.88
COL7A1-208ENST00000470076 LOC102724159A0A0B4J2E5 919 aa20.57■□□□□ 0.88
COL7A1-208ENST00000470076 DLL1O00548 723 aa20.57■□□□□ 0.88
COL7A1-208ENST00000470076 TLR3O15455 904 aaKnown RBP20.57■□□□□ 0.88
COL7A1-208ENST00000470076 CABYRO75952 493 aa20.57■□□□□ 0.88
COL7A1-208ENST00000470076 NT5C2P49902 561 aa20.57■□□□□ 0.88
COL7A1-208ENST00000470076 BEX3Q00994 111 aa20.57■□□□□ 0.88
COL7A1-208ENST00000470076 NUCB1Q02818 461 aa20.57■□□□□ 0.88
COL7A1-208ENST00000470076 PWP2Q15269 919 aaKnown RBP20.57■□□□□ 0.88
COL7A1-208ENST00000470076 MFSD5Q6N075 450 aa20.57■□□□□ 0.88
COL7A1-208ENST00000470076 MORC4Q8TE76 937 aa20.57■□□□□ 0.88
COL7A1-208ENST00000470076 ESR2Q92731 530 aa20.57■□□□□ 0.88
COL7A1-208ENST00000470076 YTHDC1Q96MU7 727 aaKnown RBP20.57■□□□□ 0.88
COL7A1-208ENST00000470076 Q9Y3F1 56 aa20.57■□□□□ 0.88
COL7A1-208ENST00000470076 SMPD1P17405 629 aa20.56■□□□□ 0.88
COL7A1-208ENST00000470076 ZNF543Q08ER8 600 aa20.56■□□□□ 0.88
COL7A1-208ENST00000470076 BAATQ14032 418 aaPredicted RBP20.56■□□□□ 0.88
COL7A1-208ENST00000470076 FSCN1Q16658 493 aaKnown RBP20.56■□□□□ 0.88
COL7A1-208ENST00000470076 TAPT1Q6NXT6 567 aa20.56■□□□□ 0.88
COL7A1-208ENST00000470076 TBC1D10CQ8IV04 446 aa20.56■□□□□ 0.88
COL7A1-208ENST00000470076 FBXO16Q8IX29 292 aaPredicted RBP20.56■□□□□ 0.88
COL7A1-208ENST00000470076 FAM126BQ8IXS8 530 aa20.56■□□□□ 0.88
COL7A1-208ENST00000470076 SEMA6BQ9H3T3 888 aa20.56■□□□□ 0.88
COL7A1-208ENST00000470076 UNC80Q8N2C7 3258 aa20.56■□□□□ 0.88
COL7A1-208ENST00000470076 LAMA4Q16363 1823 aa20.55■□□□□ 0.88
COL7A1-208ENST00000470076 NFIBO00712 420 aa20.55■□□□□ 0.88
COL7A1-208ENST00000470076 ZNF213O14771 459 aa20.55■□□□□ 0.88
COL7A1-208ENST00000470076 ZEB2O60315 1214 aa20.55■□□□□ 0.88
COL7A1-208ENST00000470076 IGHDP01880 384 aa20.55■□□□□ 0.88
COL7A1-208ENST00000470076 SNHG28P0DPA3 235 aa20.55■□□□□ 0.88
COL7A1-208ENST00000470076 CXCL17Q6UXB2 119 aa20.55■□□□□ 0.88
COL7A1-208ENST00000470076 EEPD1Q7L9B9 569 aa20.55■□□□□ 0.88
COL7A1-208ENST00000470076 SEZ6LQ9BYH1 1024 aa20.55■□□□□ 0.88
COL7A1-208ENST00000470076 PDGFCQ9NRA1 345 aa20.55■□□□□ 0.88
COL7A1-208ENST00000470076 DIAPH3Q9NSV4 1193 aa20.55■□□□□ 0.88
COL7A1-208ENST00000470076 DDX49Q9Y6V7 483 aaKnown RBP20.55■□□□□ 0.88
COL7A1-208ENST00000470076 WDR19Q8NEZ3 1342 aa20.54■□□□□ 0.88
COL7A1-208ENST00000470076 TMEM265A0A087WTH1 108 aa20.54■□□□□ 0.88
COL7A1-208ENST00000470076 HIP1O00291 1037 aa20.54■□□□□ 0.88
COL7A1-208ENST00000470076 DYNC1LI2O43237 492 aaPredicted RBP20.54■□□□□ 0.88
COL7A1-208ENST00000470076 ALDH5A1P51649 535 aaPredicted RBP20.54■□□□□ 0.88
COL7A1-208ENST00000470076 PPIGQ13427 754 aaKnown RBP eCLIP20.54■□□□□ 0.88
COL7A1-208ENST00000470076 GPATCH4Q5T3I0 446 aaKnown RBP20.54■□□□□ 0.88
COL7A1-208ENST00000470076 KIAA1211Q6ZU35 1233 aa20.54■□□□□ 0.88
COL7A1-208ENST00000470076 DGKHQ86XP1 1220 aa20.54■□□□□ 0.88
COL7A1-208ENST00000470076 SLC43A3Q8NBI5 491 aa20.54■□□□□ 0.88
COL7A1-208ENST00000470076 PURBQ96QR8 312 aaKnown RBP20.54■□□□□ 0.88
COL7A1-208ENST00000470076 CDX2Q99626 313 aaPredicted RBP20.54■□□□□ 0.88
COL7A1-208ENST00000470076 PTPDC1A2A3K4 754 aa20.53■□□□□ 0.88
COL7A1-208ENST00000470076 CD4P01730 458 aa20.53■□□□□ 0.88
COL7A1-208ENST00000470076 CCDC178Q5BJE1 867 aa20.53■□□□□ 0.88
COL7A1-208ENST00000470076 CWC27Q6UX04 472 aaKnown RBP20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms