RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 PDE8BO95263 885 aa10.81□□□□□ -0.68
HDAC3-205ENST00000469550 PTPREP23469 700 aa10.81□□□□□ -0.68
HDAC3-205ENST00000469550 PBX1P40424 430 aa10.81□□□□□ -0.68
HDAC3-205ENST00000469550 METAP2P50579 478 aaKnown RBP eCLIP10.81□□□□□ -0.68
HDAC3-205ENST00000469550 PLCD1P51178 756 aa10.81□□□□□ -0.68
HDAC3-205ENST00000469550 GYS2P54840 703 aa10.81□□□□□ -0.68
HDAC3-205ENST00000469550 TRIM29Q14134 588 aa10.81□□□□□ -0.68
HDAC3-205ENST00000469550 FKBP1CQ5VVH2 108 aa10.81□□□□□ -0.68
HDAC3-205ENST00000469550 OTOP1Q7RTM1 612 aa10.81□□□□□ -0.68
HDAC3-205ENST00000469550 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.81□□□□□ -0.683e-6■■■□□ 15.8
HDAC3-205ENST00000469550 CLIC6Q96NY7 704 aa10.81□□□□□ -0.68
HDAC3-205ENST00000469550 TDRD3Q9H7E2 651 aaKnown RBP10.81□□□□□ -0.68
HDAC3-205ENST00000469550 YY1AP1Q9H869 796 aa10.81□□□□□ -0.68
HDAC3-205ENST00000469550 VIPAS39Q9H9C1 493 aa10.81□□□□□ -0.68
HDAC3-205ENST00000469550 CTAGE9A4FU28 777 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 SH2B2O14492 632 aaPredicted RBP10.8□□□□□ -0.68
HDAC3-205ENST00000469550 FGFR2P21802 821 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 HAND2P61296 217 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 TRDNQ13061 729 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 CRHR2Q13324 411 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 MCM6Q14566 821 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 KARSQ15046 597 aaKnown RBP10.8□□□□□ -0.68
HDAC3-205ENST00000469550 NTRK3Q16288 839 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 LRRC24Q50LG9 513 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 CAVIN4Q5BKX8 364 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 METTL24Q5JXM2 366 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 WDR93Q6P2C0 686 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 RAD9BQ6WBX8 426 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.8□□□□□ -0.68
HDAC3-205ENST00000469550 APTXQ7Z2E3 356 aaKnown RBP10.8□□□□□ -0.68
HDAC3-205ENST00000469550 PPFIBP1Q86W92 1011 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 OPTNQ96CV9 577 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 MS4A4AQ96JQ5 239 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 TMEM87BQ96K49 555 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 ZDHHC15Q96MV8 337 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 CTAGE1Q96RT6 745 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 PNKPQ96T60 521 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 PTPN18Q99952 460 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 DESI2Q9BSY9 194 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 ABCB6Q9NP58 842 aa10.8□□□□□ -0.68
HDAC3-205ENST00000469550 CASP8Q14790 479 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 GRIK5Q16478 980 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 HSP90B2PQ58FF3 399 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 FAM83AQ86UY5 434 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 WASF1Q92558 559 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 MED15Q96RN5 788 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 AKAP2Q9Y2D5 859 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 TRIM17Q9Y577 477 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 ITIH6Q6UXX5 1313 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 CTAGE15A4D2H0 777 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 SOWAHDA6NJG2 315 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 CTAGE8P0CG41 777 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 AARSP49588 968 aaKnown RBP eCLIP10.79□□□□□ -0.68
HDAC3-205ENST00000469550 MTF1Q14872 753 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 PUM3Q15397 648 aaKnown RBP10.79□□□□□ -0.68
HDAC3-205ENST00000469550 PTPN21Q16825 1174 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 SPATA1Q5VX52 437 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 APOA5Q6Q788 366 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 CTAGE6Q86UF2 777 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 SGMS1Q86VZ5 419 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 CNGA4Q8IV77 575 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 NOSTRINQ8IVI9 506 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 CDAN1Q8IWY9 1227 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 CTAGE4Q8IX94 777 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 STK11IPQ8N1F8 1099 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 TEKT1Q969V4 418 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 ARMC5Q96C12 935 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 AIFM3Q96NN9 605 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 IRX2Q9BZI1 471 aaPredicted RBP10.79□□□□□ -0.68
HDAC3-205ENST00000469550 ELP3Q9H9T3 547 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 BRMS1Q9HCU9 246 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 PCDH10Q9P2E7 1040 aa10.79□□□□□ -0.68
HDAC3-205ENST00000469550 PUF60Q9UHX1 559 aaKnown RBP10.79□□□□□ -0.68
HDAC3-205ENST00000469550 FBXO2Q9UK22 296 aaPredicted RBP10.79□□□□□ -0.68
HDAC3-205ENST00000469550 SPDYE5A6NIY4 337 aa10.78□□□□□ -0.68
HDAC3-205ENST00000469550 MFAP3LO75121 409 aa10.78□□□□□ -0.68
HDAC3-205ENST00000469550 GTF2A2P52657 109 aa10.78□□□□□ -0.68
HDAC3-205ENST00000469550 VGLL4Q14135 290 aa10.78□□□□□ -0.68
HDAC3-205ENST00000469550 RILPL1Q5EBL4 403 aa10.78□□□□□ -0.68
HDAC3-205ENST00000469550 ZNF569Q5MCW4 686 aa10.78□□□□□ -0.68
HDAC3-205ENST00000469550 ICE2Q659A1 982 aa10.78□□□□□ -0.68
HDAC3-205ENST00000469550 HHIPL2Q6UWX4 724 aa10.78□□□□□ -0.68
HDAC3-205ENST00000469550 TMTC1Q8IUR5 882 aa10.78□□□□□ -0.68
HDAC3-205ENST00000469550 IGSF22Q8N9C0 903 aa10.78□□□□□ -0.68
HDAC3-205ENST00000469550 CTCFLQ8NI51 663 aaPredicted RBP10.78□□□□□ -0.68
HDAC3-205ENST00000469550 HOOK2Q96ED9 719 aa10.78□□□□□ -0.68
HDAC3-205ENST00000469550 NAPGQ99747 312 aaPredicted RBP10.78□□□□□ -0.68
HDAC3-205ENST00000469550 TMEM39BQ9GZU3 492 aa10.78□□□□□ -0.68
HDAC3-205ENST00000469550 LZTFL1Q9NQ48 299 aa10.78□□□□□ -0.68
HDAC3-205ENST00000469550 SAMSN1Q9NSI8 373 aaKnown RBP10.78□□□□□ -0.68
HDAC3-205ENST00000469550 CEP126Q9P2H0 1117 aa10.78□□□□□ -0.68
HDAC3-205ENST00000469550 ADD3Q9UEY8 706 aaKnown RBP10.78□□□□□ -0.68
HDAC3-205ENST00000469550 FAN1Q9Y2M0 1017 aa10.78□□□□□ -0.68
HDAC3-205ENST00000469550 PTPN22Q9Y2R2 807 aa10.78□□□□□ -0.68
HDAC3-205ENST00000469550 NID2Q14112 1375 aa10.78□□□□□ -0.68
HDAC3-205ENST00000469550 TCP10L2B9ZVM9 353 aa10.77□□□□□ -0.68
HDAC3-205ENST00000469550 GPAA1O43292 621 aa10.77□□□□□ -0.68
HDAC3-205ENST00000469550 ZBTB43O43298 467 aa10.77□□□□□ -0.68
HDAC3-205ENST00000469550 MCM3P25205 808 aa10.77□□□□□ -0.68
HDAC3-205ENST00000469550 CORO7P57737 925 aa10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms