RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 FGRP09769 529 aa19.04■□□□□ 0.64
COL7A1-204ENST00000462475 NKX3-2P78367 333 aa19.04■□□□□ 0.64
COL7A1-204ENST00000462475 ALX1Q15699 326 aa19.04■□□□□ 0.64
COL7A1-204ENST00000462475 CCDC96Q2M329 555 aa19.04■□□□□ 0.64
COL7A1-204ENST00000462475 MYLIPQ8WY64 445 aa19.04■□□□□ 0.64
COL7A1-204ENST00000462475 HELLSQ9NRZ9 838 aa19.04■□□□□ 0.64
COL7A1-204ENST00000462475 CYP39A1Q9NYL5 469 aa19.04■□□□□ 0.64
COL7A1-204ENST00000462475 ASB14A6NK59 587 aa19.03■□□□□ 0.64
COL7A1-204ENST00000462475 ARVCFO00192 962 aa19.03■□□□□ 0.64
COL7A1-204ENST00000462475 TNFAIP2Q03169 654 aa19.03■□□□□ 0.64
COL7A1-204ENST00000462475 TTBK2Q6IQ55 1244 aa19.03■□□□□ 0.64
COL7A1-204ENST00000462475 MFSD5Q6N075 450 aa19.03■□□□□ 0.64
COL7A1-204ENST00000462475 NOL8Q76FK4 1167 aaKnown RBP19.03■□□□□ 0.64
COL7A1-204ENST00000462475 FAM126BQ8IXS8 530 aa19.03■□□□□ 0.64
COL7A1-204ENST00000462475 DCAF4Q8WV16 495 aa19.03■□□□□ 0.64
COL7A1-204ENST00000462475 PURBQ96QR8 312 aaKnown RBP19.03■□□□□ 0.64
COL7A1-204ENST00000462475 TOMM22Q9NS69 142 aa19.03■□□□□ 0.64
COL7A1-204ENST00000462475 CCPG1Q9ULG6 757 aa19.03■□□□□ 0.64
COL7A1-204ENST00000462475 GNEQ9Y223 722 aaKnown RBP19.03■□□□□ 0.64
COL7A1-204ENST00000462475 FGAP02671 866 aa19.02■□□□□ 0.64
COL7A1-204ENST00000462475 SLC16A2P36021 539 aa19.02■□□□□ 0.64
COL7A1-204ENST00000462475 HDAC1Q13547 482 aaPredicted RBP19.02■□□□□ 0.64
COL7A1-204ENST00000462475 RRP12Q5JTH9 1297 aaKnown RBP19.02■□□□□ 0.64
COL7A1-204ENST00000462475 NSMFQ6X4W1 530 aa19.02■□□□□ 0.64
COL7A1-204ENST00000462475 EEPD1Q7L9B9 569 aa19.02■□□□□ 0.64
COL7A1-204ENST00000462475 TLK2Q86UE8 772 aa19.02■□□□□ 0.64
COL7A1-204ENST00000462475 ZNF589Q86UQ0 364 aaPredicted RBP19.02■□□□□ 0.64
COL7A1-204ENST00000462475 FBXO16Q8IX29 292 aaPredicted RBP19.02■□□□□ 0.64
COL7A1-204ENST00000462475 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.02■□□□□ 0.64
COL7A1-204ENST00000462475 PDGFCQ9NRA1 345 aa19.02■□□□□ 0.64
COL7A1-204ENST00000462475 SPTBN5Q9NRC6 3674 aaKnown RBP19.02■□□□□ 0.64
COL7A1-204ENST00000462475 ICAM1P05362 532 aa19.01■□□□□ 0.63
COL7A1-204ENST00000462475 SMPD1P17405 629 aa19.01■□□□□ 0.63
COL7A1-204ENST00000462475 NMIQ13287 307 aaPredicted RBP19.01■□□□□ 0.63
COL7A1-204ENST00000462475 MCMDC2Q4G0Z9 681 aa19.01■□□□□ 0.63
COL7A1-204ENST00000462475 TMEM63BQ5T3F8 832 aa19.01■□□□□ 0.63
COL7A1-204ENST00000462475 CXCL17Q6UXB2 119 aa19.01■□□□□ 0.63
COL7A1-204ENST00000462475 C16orf59Q7L2K0 433 aa19.01■□□□□ 0.63
COL7A1-204ENST00000462475 MAFAQ8NHW3 353 aaPredicted RBP19.01■□□□□ 0.63
COL7A1-204ENST00000462475 TMEM47Q9BQJ4 181 aa19.01■□□□□ 0.63
COL7A1-204ENST00000462475 COL25A1Q9BXS0 654 aaPredicted RBP19.01■□□□□ 0.63
COL7A1-204ENST00000462475 PPP1R12CQ9BZL4 782 aa19.01■□□□□ 0.63
COL7A1-204ENST00000462475 RANBP17Q9H2T7 1088 aaKnown RBP19.01■□□□□ 0.63
COL7A1-204ENST00000462475 FRMPD2Q68DX3 1309 aaPredicted RBP19■□□□□ 0.63
COL7A1-204ENST00000462475 TMEM265A0A087WTH1 108 aa19■□□□□ 0.63
COL7A1-204ENST00000462475 HSPD1P10809 573 aaKnown RBP19■□□□□ 0.63
COL7A1-204ENST00000462475 TOP1P11387 765 aaKnown RBP19■□□□□ 0.63
COL7A1-204ENST00000462475 CSF2RAP15509 400 aa19■□□□□ 0.63
COL7A1-204ENST00000462475 DNAJB2P25686 324 aa19■□□□□ 0.63
COL7A1-204ENST00000462475 HAND2P61296 217 aa19■□□□□ 0.63
COL7A1-204ENST00000462475 FSCN1Q16658 493 aaKnown RBP19■□□□□ 0.63
COL7A1-204ENST00000462475 SYDE2Q5VT97 1194 aa19■□□□□ 0.63
COL7A1-204ENST00000462475 TAPT1Q6NXT6 567 aa19■□□□□ 0.63
COL7A1-204ENST00000462475 BTNL9Q6UXG8 535 aa19■□□□□ 0.63
COL7A1-204ENST00000462475 ZMYM6O95789 1325 aa19■□□□□ 0.63
COL7A1-204ENST00000462475 NFIBO00712 420 aa18.99■□□□□ 0.63
COL7A1-204ENST00000462475 TLR3O15455 904 aaKnown RBP18.99■□□□□ 0.63
COL7A1-204ENST00000462475 DYNC1LI2O43237 492 aaPredicted RBP18.99■□□□□ 0.63
COL7A1-204ENST00000462475 CD4P01730 458 aa18.99■□□□□ 0.63
COL7A1-204ENST00000462475 FOSL2P15408 326 aa18.99■□□□□ 0.63
COL7A1-204ENST00000462475 PPIGQ13427 754 aaKnown RBP eCLIP18.99■□□□□ 0.631e-9■■■■□ 26.5
COL7A1-204ENST00000462475 TMEM240Q5SV17 173 aa18.99■□□□□ 0.63
COL7A1-204ENST00000462475 SLC43A3Q8NBI5 491 aa18.99■□□□□ 0.63
COL7A1-204ENST00000462475 LNPKQ9C0E8 428 aa18.99■□□□□ 0.63
COL7A1-204ENST00000462475 GPCPD1Q9NPB8 672 aa18.99■□□□□ 0.63
COL7A1-204ENST00000462475 LCTP09848 1927 aa18.99■□□□□ 0.63
COL7A1-204ENST00000462475 GRIN2DO15399 1336 aa18.99■□□□□ 0.63
COL7A1-204ENST00000462475 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.98■□□□□ 0.63
COL7A1-204ENST00000462475 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.98■□□□□ 0.63
COL7A1-204ENST00000462475 ACRP10323 421 aa18.98■□□□□ 0.63
COL7A1-204ENST00000462475 BAATQ14032 418 aaPredicted RBP18.98■□□□□ 0.63
COL7A1-204ENST00000462475 TBC1D10CQ8IV04 446 aa18.98■□□□□ 0.63
COL7A1-204ENST00000462475 MORC4Q8TE76 937 aa18.98■□□□□ 0.63
COL7A1-204ENST00000462475 AP5M1Q9H0R1 490 aa18.98■□□□□ 0.63
COL7A1-204ENST00000462475 VTA1Q9NP79 307 aa18.98■□□□□ 0.63
COL7A1-204ENST00000462475 TCP11L1Q9NUJ3 509 aa18.98■□□□□ 0.63
COL7A1-204ENST00000462475 CCDC171Q6TFL3 1326 aa18.98■□□□□ 0.63
COL7A1-204ENST00000462475 TRIM6-TRIM34B2RNG4 842 aa18.97■□□□□ 0.63
COL7A1-204ENST00000462475 CABYRO75952 493 aa18.97■□□□□ 0.63
COL7A1-204ENST00000462475 PDHBP11177 359 aa18.97■□□□□ 0.63
COL7A1-204ENST00000462475 CYP2C18P33260 490 aa18.97■□□□□ 0.63
COL7A1-204ENST00000462475 GRIN2CQ14957 1233 aa18.97■□□□□ 0.63
COL7A1-204ENST00000462475 RASIP1Q5U651 963 aa18.97■□□□□ 0.63
COL7A1-204ENST00000462475 IQSEC1Q6DN90 963 aa18.97■□□□□ 0.63
COL7A1-204ENST00000462475 SLC30A10Q6XR72 485 aa18.97■□□□□ 0.63
COL7A1-204ENST00000462475 TMEM199Q8N511 208 aa18.97■□□□□ 0.63
COL7A1-204ENST00000462475 UMODL1Q5DID0 1318 aa18.97■□□□□ 0.63
COL7A1-204ENST00000462475 ALDH5A1P51649 535 aaPredicted RBP18.96■□□□□ 0.63
COL7A1-204ENST00000462475 PSMC6P62333 389 aa18.96■□□□□ 0.63
COL7A1-204ENST00000462475 ITGA7Q13683 1181 aa18.96■□□□□ 0.63
COL7A1-204ENST00000462475 KIAA1211Q6ZU35 1233 aa18.96■□□□□ 0.63
COL7A1-204ENST00000462475 ZNF365Q70YC5 407 aa18.96■□□□□ 0.63
COL7A1-204ENST00000462475 PTPDC1A2A3K4 754 aa18.95■□□□□ 0.62
COL7A1-204ENST00000462475 GRXCR1A8MXD5 290 aa18.95■□□□□ 0.62
COL7A1-204ENST00000462475 PBX2P40425 430 aa18.95■□□□□ 0.62
COL7A1-204ENST00000462475 ZNF543Q08ER8 600 aa18.95■□□□□ 0.62
COL7A1-204ENST00000462475 AKNAD1Q5T1N1 836 aa18.95■□□□□ 0.62
COL7A1-204ENST00000462475 PSRC1Q6PGN9 363 aaPredicted RBP18.95■□□□□ 0.62
COL7A1-204ENST00000462475 TICAM2Q86XR7 235 aa18.95■□□□□ 0.62
COL7A1-204ENST00000462475 CLEC4DQ8WXI8 215 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms