RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-215ENST00000460912 SASH3O75995 380 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 TOP1P11387 765 aaKnown RBP9.92□□□□□ -0.82
SYNE1-215ENST00000460912 ERCC6LQ2NKX8 1250 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 ZNF804AQ7Z570 1209 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 ZC3H3Q8IXZ2 948 aaKnown RBP9.92□□□□□ -0.82
SYNE1-215ENST00000460912 SMYD4Q8IYR2 804 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-215ENST00000460912 DHX58Q96C10 678 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 CCDC51Q96ER9 411 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 TMEM47Q9BQJ4 181 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 SRRTQ9BXP5 876 aaKnown RBP9.92□□□□□ -0.82
SYNE1-215ENST00000460912 ABCF2Q9UG63 623 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 MYO3BQ8WXR4 1341 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 THSD7BQ9C0I4 1608 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 A0A1W2PQC6 194 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 PRCPP42785 496 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 TPM4P67936 248 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 ZNF174Q15697 407 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 DPY19L2P1Q6NXN4 242 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 NEDD1Q8NHV4 660 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 DYNLL2Q96FJ2 89 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 MAP2K7O14733 419 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 TBC1D8O95759 1140 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 YBX3P16989 372 aaKnown RBP eCLIP9.92□□□□□ -0.82
SYNE1-215ENST00000460912 APOBEC3HQ6NTF7 200 aaKnown RBP9.92□□□□□ -0.82
SYNE1-215ENST00000460912 HHIPL2Q6UWX4 724 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 CCDC82Q8N4S0 544 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 MSANTD4Q8NCY6 345 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 NUP133Q8WUM0 1156 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 C7orf25Q9BPX7 421 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 ANKZF1Q9H8Y5 726 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 ABHD10Q9NUJ1 306 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 PIM2Q9P1W9 311 aa9.92□□□□□ -0.82
SYNE1-215ENST00000460912 HOOK1Q9UJC3 728 aaKnown RBP9.92□□□□□ -0.82
SYNE1-215ENST00000460912 LCA5LO95447 670 aa9.91□□□□□ -0.82
SYNE1-215ENST00000460912 HNRNPH3P31942 346 aaKnown RBP9.91□□□□□ -0.82
SYNE1-215ENST00000460912 MMP14P50281 582 aa9.91□□□□□ -0.82
SYNE1-215ENST00000460912 FAM193AP78312 1265 aa9.91□□□□□ -0.82
SYNE1-215ENST00000460912 GABPB1Q06547 395 aaPredicted RBP9.91□□□□□ -0.82
SYNE1-215ENST00000460912 CFAP100Q494V2 611 aa9.91□□□□□ -0.82
SYNE1-215ENST00000460912 SOGA3Q5TF21 947 aa9.91□□□□□ -0.82
SYNE1-215ENST00000460912 PNMA1Q8ND90 353 aa9.91□□□□□ -0.82
SYNE1-215ENST00000460912 WDR66Q8TBY9 1149 aa9.91□□□□□ -0.82
SYNE1-215ENST00000460912 ZDHHC15Q96MV8 337 aa9.91□□□□□ -0.82
SYNE1-215ENST00000460912 PYM1Q9BRP8 204 aaKnown RBP9.91□□□□□ -0.82
SYNE1-215ENST00000460912 TAOK2Q9UL54 1235 aa9.91□□□□□ -0.82
SYNE1-215ENST00000460912 ATF5Q9Y2D1 282 aaPredicted RBP9.91□□□□□ -0.82
SYNE1-215ENST00000460912 ZC3H4Q9UPT8 1303 aaKnown RBP9.91□□□□□ -0.82
SYNE1-215ENST00000460912 USP17L3A6NCW0 530 aa9.91□□□□□ -0.82
SYNE1-215ENST00000460912 USP17L4A6NCW7 530 aa9.91□□□□□ -0.82
SYNE1-215ENST00000460912 GOLGA6L9A6NEM1 432 aa9.91□□□□□ -0.82
SYNE1-215ENST00000460912 ECE2O60344 883 aa9.91□□□□□ -0.82
SYNE1-215ENST00000460912 RPN1P04843 607 aaKnown RBP9.91□□□□□ -0.82
SYNE1-215ENST00000460912 PIK3AP1Q6ZUJ8 805 aa9.91□□□□□ -0.82
SYNE1-215ENST00000460912 USP17L1Q7RTZ2 530 aa9.91□□□□□ -0.82
SYNE1-215ENST00000460912 SERPINC1P01008 464 aa9.91□□□□□ -0.82
SYNE1-215ENST00000460912 ZNF572Q7Z3I7 529 aaPredicted RBP9.91□□□□□ -0.82
SYNE1-215ENST00000460912 AKR1B15C9JRZ8 316 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-215ENST00000460912 ATP8B1O43520 1251 aa9.9□□□□□ -0.82
SYNE1-215ENST00000460912 PPP1R11O60927 126 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-215ENST00000460912 TFAP4Q01664 338 aa9.9□□□□□ -0.82
SYNE1-215ENST00000460912 HYIQ5T013 277 aa9.9□□□□□ -0.82
SYNE1-215ENST00000460912 DPP8Q6V1X1 898 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-215ENST00000460912 IQUBQ8NA54 791 aa9.9□□□□□ -0.82
SYNE1-215ENST00000460912 HNRNPLLQ8WVV9 542 aaKnown RBP9.9□□□□□ -0.82
SYNE1-215ENST00000460912 MBOAT7Q96N66 472 aa9.9□□□□□ -0.82
SYNE1-215ENST00000460912 THAP9Q9H5L6 903 aa9.9□□□□□ -0.82
SYNE1-215ENST00000460912 COL11A1P12107 1806 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-215ENST00000460912 CALML3P27482 149 aa9.9□□□□□ -0.82
SYNE1-215ENST00000460912 CDK17Q00537 523 aa9.9□□□□□ -0.82
SYNE1-215ENST00000460912 FIGNQ5HY92 759 aa9.9□□□□□ -0.82
SYNE1-215ENST00000460912 SPTY2D1Q68D10 685 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-215ENST00000460912 SUPT20HQ8NEM7 779 aa9.9□□□□□ -0.82
SYNE1-215ENST00000460912 LZTS2Q9BRK4 669 aa9.9□□□□□ -0.82
SYNE1-215ENST00000460912 MAGEF1Q9HAY2 307 aa9.9□□□□□ -0.82
SYNE1-215ENST00000460912 BLOC1S4Q9NUP1 217 aa9.9□□□□□ -0.82
SYNE1-215ENST00000460912 C21orf2O43822 256 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 PNMA6AP0CW24 399 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-215ENST00000460912 TMEM119Q4V9L6 283 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 CCDC178Q5BJE1 867 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 SLC44A5Q8NCS7 719 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 CTAGE1Q96RT6 745 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 CUEDC2Q9H467 287 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 PCDHA2Q9Y5H9 948 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 LGALS16A8MUM7 142 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 ZSCAN12O43309 604 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 XBP1P17861 261 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 FXR2P51116 673 aaKnown RBP eCLIP9.89□□□□□ -0.83
SYNE1-215ENST00000460912 COPB1P53618 953 aaKnown RBP9.89□□□□□ -0.83
SYNE1-215ENST00000460912 TERF2Q15554 542 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 DIXDC1Q155Q3 683 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 GPKOWQ92917 476 aaPredicted RBP eCLIP9.89□□□□□ -0.83
SYNE1-215ENST00000460912 PNMA5Q96PV4 448 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 IRX2Q9BZI1 471 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-215ENST00000460912 CAPN11Q9UMQ6 739 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 GDAQ9Y2T3 454 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 PP2D1A8MPX8 630 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 CASP14P31944 242 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 HERVK_113P62684 666 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 CBX1P83916 185 aa9.89□□□□□ -0.83
SYNE1-215ENST00000460912 AOC3Q16853 763 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms