RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 CUTAO60888 179 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 PRDM1O75626 825 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 NOP2P46087 812 aaKnown RBP6.87□□□□□ -1.31
VPS13D-202ENST00000460333 MXRA7P84157 204 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 TFAP4Q01664 338 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 UBXN1Q04323 297 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 MAP7Q14244 749 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 KMT5BQ4FZB7 885 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 SBK1Q52WX2 424 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 SMIM5Q71RC9 77 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 RPUSD2Q8IZ73 545 aaKnown RBP6.87□□□□□ -1.31
VPS13D-202ENST00000460333 IFT81Q8WYA0 676 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.87□□□□□ -1.31
VPS13D-202ENST00000460333 FAN1Q9Y2M0 1017 aa6.87□□□□□ -1.31
VPS13D-202ENST00000460333 NUP98P52948 1817 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 SHANK3Q9BYB0 1731 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 NEDD4P46934 1319 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 SALL1Q9NSC2 1324 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 F8W031 263 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-202ENST00000460333 ORC4O43929 436 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 RNF40O75150 1001 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 POTEJP0CG39 1038 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 TAOK1Q7L7X3 1001 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 TRIM6Q9C030 488 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-202ENST00000460333 TRIM4Q9C037 500 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 RTEL1Q9NZ71 1219 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 ADAM21Q9UKJ8 722 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 ATP6V0A2Q9Y487 856 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 SAR1BQ9Y6B6 198 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 SEC31AO94979 1220 aaKnown RBP6.86□□□□□ -1.31
VPS13D-202ENST00000460333 MYCNP04198 464 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-202ENST00000460333 GUCY2CP25092 1073 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 PRDX5P30044 214 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 EN1Q05925 392 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-202ENST00000460333 TRAF1Q13077 416 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 GKAP1Q5VSY0 366 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-202ENST00000460333 ADALQ6DHV7 355 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 C15orf52Q6ZUT6 534 aaKnown RBP6.86□□□□□ -1.31
VPS13D-202ENST00000460333 CYB5R4Q7L1T6 521 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 PNMA8AQ86V59 439 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-202ENST00000460333 MAPKAPK5Q8IW41 473 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 ARHGAP24Q8N264 748 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 CTNNBL1Q8WYA6 563 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-202ENST00000460333 SECISBP2LQ93073 1101 aaKnown RBP6.86□□□□□ -1.31
VPS13D-202ENST00000460333 PHKBQ93100 1093 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 GBP5Q96PP8 586 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 SMC6Q96SB8 1091 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 NAP1L3Q99457 506 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-202ENST00000460333 MYL10Q9BUA6 226 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 LY9Q9HBG7 655 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 EXOC1Q9NV70 894 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 RCOR1Q9UKL0 485 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 TAF6LQ9Y6J9 622 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 MROH7-TTC4A0A0A0MT08 1334 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 IKBKBO14920 756 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 RASSF2P50749 326 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 DNA2P51530 1060 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 PICALMQ13492 652 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 FAM173BQ6P4H8 233 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 C3orf67Q6ZVT6 689 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 DIS3L2Q8IYB7 885 aaKnown RBP6.86□□□□□ -1.31
VPS13D-202ENST00000460333 SH3GL3Q99963 347 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 DCP1AQ9NPI6 582 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-202ENST00000460333 POLR3EQ9NVU0 708 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 KIAA1468Q9P260 1216 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 A0A1B0GVL5 298 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 HIP1RO75146 1068 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 VIMP08670 466 aaKnown RBP6.86□□□□□ -1.31
VPS13D-202ENST00000460333 PARP1P09874 1014 aaKnown RBP6.86□□□□□ -1.31
VPS13D-202ENST00000460333 E2F4Q16254 413 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 TMEM266Q2M3C6 531 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 NBPF9Q3BBW0 867 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 PHLDB2Q86SQ0 1253 aa6.86□□□□□ -1.31
VPS13D-202ENST00000460333 ZNF526Q8TF50 670 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-202ENST00000460333 RRP36Q96EU6 259 aaKnown RBP6.86□□□□□ -1.31
VPS13D-202ENST00000460333 SAP30BPQ9UHR5 308 aaKnown RBP6.86□□□□□ -1.31
VPS13D-202ENST00000460333 A0A1W2PQ27 194 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 A0A1W2PQ64 194 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 A0A1W2PQD8 194 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 CIB2O75838 187 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 HOXA10P31260 410 aaPredicted RBP6.85□□□□□ -1.31
VPS13D-202ENST00000460333 HPDP32754 393 aaPredicted RBP6.85□□□□□ -1.31
VPS13D-202ENST00000460333 SATB1Q01826 763 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 DGKHQ86XP1 1220 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 TBC1D16Q8TBP0 767 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 UBLCP1Q8WVY7 318 aaPredicted RBP6.85□□□□□ -1.31
VPS13D-202ENST00000460333 MPHOSPH6Q99547 160 aaKnown RBP6.85□□□□□ -1.31
VPS13D-202ENST00000460333 JPH2Q9BR39 696 aaPredicted RBP6.85□□□□□ -1.31
VPS13D-202ENST00000460333 PARD6BQ9BYG5 372 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 VCX3BQ9H321 246 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 CXorf56Q9H5V9 222 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 EPB41L4AQ9HCS5 686 aaPredicted RBP6.85□□□□□ -1.31
VPS13D-202ENST00000460333 VCX3AQ9NNX9 186 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 TCP11L1Q9NUJ3 509 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 NKIRAS1Q9NYS0 192 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.85□□□□□ -1.31
VPS13D-202ENST00000460333 V9GY48 417 aaPredicted RBP6.85□□□□□ -1.31
VPS13D-202ENST00000460333 ANKRD36CQ5JPF3 1778 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 LOC102724159A0A0B4J2E5 919 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 ZNF202O95125 648 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms