RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 GDPD2Q9HCC8 539 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 GINM1Q9NU53 330 aa11.86□□□□□ -0.51
USP39-210ENST00000459775 SLC10A3P09131 477 aa11.85□□□□□ -0.51
USP39-210ENST00000459775 POTEEQ6S8J3 1075 aa11.85□□□□□ -0.51
USP39-210ENST00000459775 RNF186Q9NXI6 227 aa11.85□□□□□ -0.51
USP39-210ENST00000459775 TFIP11Q9UBB9 837 aaKnown RBP11.85□□□□□ -0.51
USP39-210ENST00000459775 TESPA1A2RU30 521 aaPredicted RBP11.84□□□□□ -0.51
USP39-210ENST00000459775 WDR46O15213 610 aaKnown RBP11.84□□□□□ -0.51
USP39-210ENST00000459775 FKBP1BP68106 108 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 KIF23Q02241 960 aaPredicted RBP11.84□□□□□ -0.51
USP39-210ENST00000459775 PPATQ06203 517 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 RESTQ13127 1097 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 BTNL9Q6UXG8 535 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 DIS3L2Q8IYB7 885 aaKnown RBP11.84□□□□□ -0.51
USP39-210ENST00000459775 LPAR1Q92633 364 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 ATG4CQ96DT6 458 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 MTMR8Q96EF0 704 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 SEC63Q9UGP8 760 aaKnown RBP11.84□□□□□ -0.51
USP39-210ENST00000459775 PHIPQ8WWQ0 1821 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 PNMA6FA0A0J9YX94 578 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 ZBTB5O15062 677 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 MMP1P03956 469 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 ZNF157P51786 506 aaPredicted RBP11.84□□□□□ -0.51
USP39-210ENST00000459775 USP14P54578 494 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 NLRP5P59047 1200 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 CEBPZQ03701 1054 aaKnown RBP11.84□□□□□ -0.51
USP39-210ENST00000459775 DNM1Q05193 864 aaKnown RBP11.84□□□□□ -0.51
USP39-210ENST00000459775 MOGSQ13724 837 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 TRIM29Q14134 588 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 CPXCR1Q8N123 301 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 AGBL1Q96MI9 1066 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 TSPAN18Q96SJ8 248 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 PHF20Q9BVI0 1012 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 BARHL2Q9NY43 387 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 TMOD4Q9NZQ9 345 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 SYNPO2Q9UMS6 1093 aa11.84□□□□□ -0.51
USP39-210ENST00000459775 C19orf81C9J6K1 198 aa11.83□□□□□ -0.52
USP39-210ENST00000459775 CALRP27797 417 aaKnown RBP11.83□□□□□ -0.52
USP39-210ENST00000459775 NAPAP54920 295 aa11.83□□□□□ -0.52
USP39-210ENST00000459775 SEMA3FQ13275 785 aa11.83□□□□□ -0.52
USP39-210ENST00000459775 PPIL2Q13356 520 aa11.83□□□□□ -0.52
USP39-210ENST00000459775 WASF1Q92558 559 aa11.83□□□□□ -0.52
USP39-210ENST00000459775 PGBD1Q96JS3 809 aa11.83□□□□□ -0.52
USP39-210ENST00000459775 SLF1Q9BQI6 1058 aa11.83□□□□□ -0.52
USP39-210ENST00000459775 RAVER2Q9HCJ3 691 aaKnown RBP11.83□□□□□ -0.52
USP39-210ENST00000459775 TMEM260Q9NX78 707 aa11.83□□□□□ -0.52
USP39-210ENST00000459775 FEM1BQ9UK73 627 aa11.83□□□□□ -0.52
USP39-210ENST00000459775 CNPY2Q9Y2B0 182 aa11.83□□□□□ -0.52
USP39-210ENST00000459775 KIF3AQ9Y496 699 aa11.83□□□□□ -0.52
USP39-210ENST00000459775 PCDHA1Q9Y5I3 950 aa11.83□□□□□ -0.52
USP39-210ENST00000459775 A0A0G2JLL6 359 aaPredicted RBP11.83□□□□□ -0.52
USP39-210ENST00000459775 WNT7AO00755 349 aa11.83□□□□□ -0.52
USP39-210ENST00000459775 BAG4O95429 457 aaKnown RBP11.83□□□□□ -0.52
USP39-210ENST00000459775 ATP2B1P20020 1258 aa11.83□□□□□ -0.52
USP39-210ENST00000459775 SMARCA1P28370 1054 aa11.83□□□□□ -0.52
USP39-210ENST00000459775 UBE2SQ16763 222 aa11.83□□□□□ -0.52
USP39-210ENST00000459775 PRRT2Q7Z6L0 340 aaPredicted RBP11.83□□□□□ -0.52
USP39-210ENST00000459775 CHURC1Q8WUH1 139 aa11.83□□□□□ -0.52
USP39-210ENST00000459775 TBC1D5Q92609 795 aa11.83□□□□□ -0.52
USP39-210ENST00000459775 R3HDMLQ9H3Y0 253 aa11.83□□□□□ -0.52
USP39-210ENST00000459775 KCNH4Q9UQ05 1017 aa11.83□□□□□ -0.52
USP39-210ENST00000459775 SMCO2A6NFE2 343 aa11.82□□□□□ -0.52
USP39-210ENST00000459775 SH3D19Q5HYK7 790 aa11.82□□□□□ -0.52
USP39-210ENST00000459775 CATSPERGQ6ZRH7 1159 aa11.82□□□□□ -0.52
USP39-210ENST00000459775 PRPF38AQ8NAV1 312 aaKnown RBP11.82□□□□□ -0.52
USP39-210ENST00000459775 MS4A4AQ96JQ5 239 aa11.82□□□□□ -0.52
USP39-210ENST00000459775 C12orf42Q96LP6 360 aa11.82□□□□□ -0.52
USP39-210ENST00000459775 ZIC5Q96T25 663 aa11.82□□□□□ -0.52
USP39-210ENST00000459775 P2RX7Q99572 595 aaKnown RBP11.82□□□□□ -0.52
USP39-210ENST00000459775 HOMER2Q9NSB8 354 aa11.82□□□□□ -0.52
USP39-210ENST00000459775 RPS6KL1Q9Y6S9 549 aa11.82□□□□□ -0.52
USP39-210ENST00000459775 ZNF536O15090 1300 aa11.82□□□□□ -0.52
USP39-210ENST00000459775 USP17L15C9J2P7 530 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 USP17L13C9JLJ4 530 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 USP17L11C9JVI0 530 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 USP17L18D6R9N7 530 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 USP17L22D6RA61 530 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 USP17L17D6RBQ6 530 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 USP17L19D6RCP7 530 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 USP17L20D6RJB6 530 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 TRPA1O75762 1119 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 USP17L24Q0WX57 530 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 SETDB1Q15047 1291 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 GPAT2Q6NUI2 795 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 USP17L6PQ6QN14 398 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 FBXO11Q86XK2 927 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 RANBP17Q9H2T7 1088 aaKnown RBP11.81□□□□□ -0.52
USP39-210ENST00000459775 BIN2Q9UBW5 565 aaPredicted RBP11.81□□□□□ -0.52
USP39-210ENST00000459775 PPP1R9AQ9ULJ8 1098 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 RIPK3Q9Y572 518 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 VWA5AO00534 786 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 CXCL11O14625 94 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 OPLAHO14841 1288 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 CYP2C8P10632 490 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 HOXA13P31271 388 aaPredicted RBP11.81□□□□□ -0.52
USP39-210ENST00000459775 GNL2Q13823 731 aaKnown RBP11.81□□□□□ -0.52
USP39-210ENST00000459775 JAKMIP3Q5VZ66 844 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 SPRYD7Q5W111 196 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 FAM43AQ8N2R8 423 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 BRI3BPQ8WY22 251 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms