RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 PPP1R11O60927 126 aaPredicted RBP13.38□□□□□ -0.27
SCN9A-204ENST00000452182 SCG2P13521 617 aa13.38□□□□□ -0.27
SCN9A-204ENST00000452182 FDPSP14324 419 aaKnown RBP13.38□□□□□ -0.27
SCN9A-204ENST00000452182 SNAP25P60880 206 aa13.38□□□□□ -0.27
SCN9A-204ENST00000452182 BECN1Q14457 450 aa13.38□□□□□ -0.27
SCN9A-204ENST00000452182 SNRNP48Q6IEG0 339 aaKnown RBP13.38□□□□□ -0.27
SCN9A-204ENST00000452182 CPXCR1Q8N123 301 aa13.38□□□□□ -0.27
SCN9A-204ENST00000452182 FAM177A1Q8N128 213 aaPredicted RBP13.38□□□□□ -0.27
SCN9A-204ENST00000452182 SPRYD3Q8NCJ5 442 aa13.38□□□□□ -0.27
SCN9A-204ENST00000452182 WASF1Q92558 559 aa13.38□□□□□ -0.27
SCN9A-204ENST00000452182 AGBL1Q96MI9 1066 aa13.38□□□□□ -0.27
SCN9A-204ENST00000452182 MAF1Q9H063 256 aa13.38□□□□□ -0.27
SCN9A-204ENST00000452182 R3HDMLQ9H3Y0 253 aa13.38□□□□□ -0.27
SCN9A-204ENST00000452182 CCPG1Q9ULG6 757 aa13.38□□□□□ -0.27
SCN9A-204ENST00000452182 ABCB11O95342 1321 aa13.37□□□□□ -0.27
SCN9A-204ENST00000452182 TBC1D8O95759 1140 aa13.37□□□□□ -0.27
SCN9A-204ENST00000452182 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.37□□□□□ -0.27
SCN9A-204ENST00000452182 MOV10L1Q9BXT6 1211 aaKnown RBP13.37□□□□□ -0.27
SCN9A-204ENST00000452182 ORC3Q9UBD5 711 aaPredicted RBP13.37□□□□□ -0.27
SCN9A-204ENST00000452182 FBXO40Q9UH90 709 aa13.37□□□□□ -0.27
SCN9A-204ENST00000452182 PCDHA1Q9Y5I3 950 aa13.37□□□□□ -0.27
SCN9A-204ENST00000452182 SMCHD1A6NHR9 2005 aa13.37□□□□□ -0.27
SCN9A-204ENST00000452182 hCG_1642624A0A1W2PR95 340 aa13.36□□□□□ -0.27
SCN9A-204ENST00000452182 RIOK3O14730 519 aaKnown RBP13.36□□□□□ -0.27
SCN9A-204ENST00000452182 JAK2O60674 1132 aa13.36□□□□□ -0.27
SCN9A-204ENST00000452182 ANP32AP39687 249 aaKnown RBP13.36□□□□□ -0.27
SCN9A-204ENST00000452182 PLS1Q14651 629 aa13.36□□□□□ -0.27
SCN9A-204ENST00000452182 PPP1R18Q6NYC8 613 aa13.36□□□□□ -0.27
SCN9A-204ENST00000452182 TEX2Q8IWB9 1127 aa13.36□□□□□ -0.27
SCN9A-204ENST00000452182 CHST13Q8NET6 341 aa13.36□□□□□ -0.27
SCN9A-204ENST00000452182 PIBF1Q8WXW3 757 aa13.36□□□□□ -0.27
SCN9A-204ENST00000452182 MROH8Q9H579 483 aa13.36□□□□□ -0.27
SCN9A-204ENST00000452182 SH3GLB2Q9NR46 395 aa13.36□□□□□ -0.27
SCN9A-204ENST00000452182 BARHL2Q9NY43 387 aa13.36□□□□□ -0.27
SCN9A-204ENST00000452182 RIPK3Q9Y572 518 aa13.36□□□□□ -0.27
SCN9A-204ENST00000452182 PEX10O60683 326 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 PPFIA3O75145 1194 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 CHRM1P11229 460 aaPredicted RBP13.35□□□□□ -0.27
SCN9A-204ENST00000452182 ERCC3P19447 782 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 MAPK4P31152 587 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 SP3Q02447 781 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 USH1GQ495M9 461 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 WWC2Q6AWC2 1192 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 RGS22Q8NE09 1264 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 CCDC12Q8WUD4 166 aaPredicted RBP13.35□□□□□ -0.27
SCN9A-204ENST00000452182 TRERF1Q96PN7 1200 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 MRPL11Q9Y3B7 192 aaKnown RBP13.35□□□□□ -0.27
SCN9A-204ENST00000452182 KIF3AQ9Y496 699 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 RBM19Q9Y4C8 960 aaKnown RBP13.35□□□□□ -0.27
SCN9A-204ENST00000452182 RBBP6Q7Z6E9 1792 aaKnown RBP13.35□□□□□ -0.27
SCN9A-204ENST00000452182 MGAMO43451 1857 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 GPR25O00155 361 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 STXBP3O00186 592 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 ALAS1P13196 640 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 GHRHRQ02643 423 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 HEATR3Q7Z4Q2 680 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 SAMD3Q8N6K7 520 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 CLEC4DQ8WXI8 215 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 COA7Q96BR5 231 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 DDX11Q96FC9 970 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 PORCNQ9H237 461 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 ACAD9Q9H845 621 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 RNF146Q9NTX7 359 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 SMC3Q9UQE7 1217 aa13.35□□□□□ -0.27
SCN9A-204ENST00000452182 ESYT2A0FGR8 921 aa13.34□□□□□ -0.27
SCN9A-204ENST00000452182 STRNO43815 780 aa13.34□□□□□ -0.27
SCN9A-204ENST00000452182 XBP1P17861 261 aa13.34□□□□□ -0.27
SCN9A-204ENST00000452182 LACTBP83111 547 aaPredicted RBP13.34□□□□□ -0.27
SCN9A-204ENST00000452182 NCAPG2Q86XI2 1143 aa13.34□□□□□ -0.27
SCN9A-204ENST00000452182 ABRAQ8N0Z2 381 aa13.34□□□□□ -0.27
SCN9A-204ENST00000452182 CCDC148Q8NFR7 591 aa13.34□□□□□ -0.27
SCN9A-204ENST00000452182 GPKOWQ92917 476 aaPredicted RBP eCLIP13.34□□□□□ -0.27
SCN9A-204ENST00000452182 ALG1Q9BT22 464 aa13.34□□□□□ -0.27
SCN9A-204ENST00000452182 MAP3K20Q9NYL2 800 aaKnown RBP13.34□□□□□ -0.27
SCN9A-204ENST00000452182 PLXNB2O15031 1838 aa13.33□□□□□ -0.28
SCN9A-204ENST00000452182 ZNF236Q9UL36 1845 aa13.33□□□□□ -0.28
SCN9A-204ENST00000452182 OPLAHO14841 1288 aa13.33□□□□□ -0.28
SCN9A-204ENST00000452182 GJB2P29033 226 aa13.33□□□□□ -0.28
SCN9A-204ENST00000452182 NAPAP54920 295 aa13.33□□□□□ -0.28
SCN9A-204ENST00000452182 MUM1L1Q5H9M0 696 aa13.33□□□□□ -0.28
SCN9A-204ENST00000452182 TYW1BQ6NUM6 668 aa13.33□□□□□ -0.28
SCN9A-204ENST00000452182 MCF2L2Q86YR7 1114 aa13.33□□□□□ -0.28
SCN9A-204ENST00000452182 CCAR1Q8IX12 1150 aaKnown RBP13.33□□□□□ -0.28
SCN9A-204ENST00000452182 FAM184AQ8NB25 1140 aa13.33□□□□□ -0.28
SCN9A-204ENST00000452182 ZMYND12Q9H0C1 365 aa13.33□□□□□ -0.28
SCN9A-204ENST00000452182 GLT8D2Q9H1C3 349 aa13.33□□□□□ -0.28
SCN9A-204ENST00000452182 EFCC1Q9HA90 598 aa13.33□□□□□ -0.28
SCN9A-204ENST00000452182 PIK3CDO00329 1044 aa13.32□□□□□ -0.28
SCN9A-204ENST00000452182 FKTNO75072 461 aa13.32□□□□□ -0.28
SCN9A-204ENST00000452182 HSP90AA1P07900 732 aaKnown RBP13.32□□□□□ -0.28
SCN9A-204ENST00000452182 SLC4A3P48751 1232 aa13.32□□□□□ -0.28
SCN9A-204ENST00000452182 GALNT17Q6IS24 598 aa13.32□□□□□ -0.28
SCN9A-204ENST00000452182 GPR142Q7Z601 462 aa13.32□□□□□ -0.28
SCN9A-204ENST00000452182 AIFM3Q96NN9 605 aa13.32□□□□□ -0.28
SCN9A-204ENST00000452182 HOMER2Q9NSB8 354 aa13.32□□□□□ -0.28
SCN9A-204ENST00000452182 VPS54Q9P1Q0 977 aa13.32□□□□□ -0.28
SCN9A-204ENST00000452182 PFASO15067 1338 aa13.32□□□□□ -0.28
SCN9A-204ENST00000452182 NFIBO00712 420 aa13.31□□□□□ -0.28
SCN9A-204ENST00000452182 DTNBO60941 627 aa13.31□□□□□ -0.28
SCN9A-204ENST00000452182 FCER1AP12319 257 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms