RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 RGS22Q8NE09 1264 aa16.8■□□□□ 0.28
TNF-208ENST00000449264 RASGRP4Q8TDF6 673 aa16.8■□□□□ 0.28
TNF-208ENST00000449264 SMCR8Q8TEV9 937 aaPredicted RBP16.8■□□□□ 0.28
TNF-208ENST00000449264 TNPO1Q92973 898 aaKnown RBP16.8■□□□□ 0.28
TNF-208ENST00000449264 PTPN18Q99952 460 aa16.8■□□□□ 0.28
TNF-208ENST00000449264 ABCB11O95342 1321 aa16.8■□□□□ 0.28
TNF-208ENST00000449264 TCHHQ07283 1943 aa16.79■□□□□ 0.28
TNF-208ENST00000449264 ESYT2A0FGR8 921 aa16.79■□□□□ 0.28
TNF-208ENST00000449264 BLIDQ8IZY5 108 aa16.79■□□□□ 0.28
TNF-208ENST00000449264 FAM177A1Q8N128 213 aaPredicted RBP16.79■□□□□ 0.28
TNF-208ENST00000449264 CUL5Q93034 780 aa16.79■□□□□ 0.28
TNF-208ENST00000449264 ZNF214Q9UL59 606 aaPredicted RBP16.79■□□□□ 0.28
TNF-208ENST00000449264 IGF2BP3O00425 579 aaKnown RBP eCLIP16.78■□□□□ 0.28
TNF-208ENST00000449264 UBE2SQ16763 222 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 DEFB115Q30KQ5 88 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 FAM173BQ6P4H8 233 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 LBX2Q6XYB7 198 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 MB21D1Q8N884 522 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 DAGLBQ8NCG7 672 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 CHAMP1Q96JM3 812 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 TEX13BQ9BXU2 312 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 FOXP1Q9H334 677 aaPredicted RBP16.78■□□□□ 0.28
TNF-208ENST00000449264 ZSCAN16Q9H4T2 348 aaPredicted RBP16.78■□□□□ 0.28
TNF-208ENST00000449264 PSTPIP2Q9H939 334 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 SLC45A1Q9Y2W3 748 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 MRPL11Q9Y3B7 192 aaKnown RBP16.78■□□□□ 0.28
TNF-208ENST00000449264 TESPA1A2RU30 521 aaPredicted RBP16.78■□□□□ 0.28
TNF-208ENST00000449264 RASSF10A6NK89 507 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 OAZ1P54368 228 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 SREBF2Q12772 1141 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 GALNT17Q6IS24 598 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 POTEEQ6S8J3 1075 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 NOSTRINQ8IVI9 506 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 REXO1Q8N1G1 1221 aaKnown RBP16.78■□□□□ 0.28
TNF-208ENST00000449264 BICD2Q8TD16 824 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 CAPNS2Q96L46 248 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 ZIC5Q96T25 663 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 PARK7Q99497 189 aaKnown RBP16.78■□□□□ 0.28
TNF-208ENST00000449264 RIC8AQ9NPQ8 531 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 BTBD7Q9P203 1132 aa16.78■□□□□ 0.28
TNF-208ENST00000449264 U2AF2P26368 475 aaKnown RBP eCLIP16.77■□□□□ 0.28
TNF-208ENST00000449264 MRPL12P52815 198 aaKnown RBP16.77■□□□□ 0.28
TNF-208ENST00000449264 HTRA3P83110 453 aa16.77■□□□□ 0.28
TNF-208ENST00000449264 BRAPQ7Z569 592 aa16.77■□□□□ 0.28
TNF-208ENST00000449264 RNF146Q9NTX7 359 aa16.77■□□□□ 0.28
TNF-208ENST00000449264 TMEM260Q9NX78 707 aa16.77■□□□□ 0.28
TNF-208ENST00000449264 BIN2Q9UBW5 565 aaPredicted RBP16.77■□□□□ 0.28
TNF-208ENST00000449264 PNMA2Q9UL42 364 aa16.77■□□□□ 0.28
TNF-208ENST00000449264 RIPK3Q9Y572 518 aa16.77■□□□□ 0.28
TNF-208ENST00000449264 ATP6V1DQ9Y5K8 247 aa16.77■□□□□ 0.28
TNF-208ENST00000449264 FAM205CA6NFA0 338 aa16.76■□□□□ 0.27
TNF-208ENST00000449264 NFIBO00712 420 aa16.76■□□□□ 0.27
TNF-208ENST00000449264 OPLAHO14841 1288 aa16.76■□□□□ 0.27
TNF-208ENST00000449264 AOC2O75106 756 aa16.76■□□□□ 0.27
TNF-208ENST00000449264 CFBP00751 764 aa16.76■□□□□ 0.27
TNF-208ENST00000449264 STAT3P40763 770 aa16.76■□□□□ 0.27
TNF-208ENST00000449264 NOM1Q5C9Z4 860 aaKnown RBP16.76■□□□□ 0.27
TNF-208ENST00000449264 MUM1L1Q5H9M0 696 aa16.76■□□□□ 0.27
TNF-208ENST00000449264 JAKMIP3Q5VZ66 844 aa16.76■□□□□ 0.27
TNF-208ENST00000449264 USP17L6PQ6QN14 398 aa16.76■□□□□ 0.27
TNF-208ENST00000449264 PIK3AP1Q6ZUJ8 805 aa16.76■□□□□ 0.27
TNF-208ENST00000449264 TRERF1Q96PN7 1200 aa16.76■□□□□ 0.27
TNF-208ENST00000449264 TXNRD2Q9NNW7 524 aa16.76■□□□□ 0.27
TNF-208ENST00000449264 PCDHA6Q9UN73 950 aa16.76■□□□□ 0.27
TNF-208ENST00000449264 PCDHA8Q9Y5H6 950 aa16.76■□□□□ 0.27
TNF-208ENST00000449264 CCDC194A0A1B0GVG4 234 aa16.75■□□□□ 0.27
TNF-208ENST00000449264 ATP2A1O14983 1001 aa16.75■□□□□ 0.27
TNF-208ENST00000449264 CNMDO75829 334 aa16.75■□□□□ 0.27
TNF-208ENST00000449264 NCLP19338 710 aaKnown RBP16.75■□□□□ 0.27
TNF-208ENST00000449264 HOXA13P31271 388 aaPredicted RBP16.75■□□□□ 0.27
TNF-208ENST00000449264 NOGQ13253 232 aa16.75■□□□□ 0.27
TNF-208ENST00000449264 EARS2Q5JPH6 523 aaKnown RBP16.75■□□□□ 0.27
TNF-208ENST00000449264 IFNL1Q8IU54 200 aa16.75■□□□□ 0.27
TNF-208ENST00000449264 TNFRSF25Q93038 417 aa16.75■□□□□ 0.27
TNF-208ENST00000449264 PGBD1Q96JS3 809 aa16.75■□□□□ 0.27
TNF-208ENST00000449264 SPATC1LQ9H0A9 340 aa16.75■□□□□ 0.27
TNF-208ENST00000449264 GLT8D2Q9H1C3 349 aa16.75■□□□□ 0.27
TNF-208ENST00000449264 M0R2N6 131 aa16.75■□□□□ 0.27
TNF-208ENST00000449264 INHBEP58166 350 aa16.75■□□□□ 0.27
TNF-208ENST00000449264 DNM1Q05193 864 aaKnown RBP16.75■□□□□ 0.27
TNF-208ENST00000449264 TAF1CQ15572 869 aaPredicted RBP16.75■□□□□ 0.27
TNF-208ENST00000449264 MYSM1Q5VVJ2 828 aa16.75■□□□□ 0.27
TNF-208ENST00000449264 GTF3C2Q8WUA4 911 aaPredicted RBP16.75■□□□□ 0.27
TNF-208ENST00000449264 CLEC4DQ8WXI8 215 aa16.75■□□□□ 0.27
TNF-208ENST00000449264 RBPJLQ9UBG7 517 aa16.75■□□□□ 0.27
TNF-208ENST00000449264 RABGAP1Q9Y3P9 1069 aa16.75■□□□□ 0.27
TNF-208ENST00000449264 NCAPG2Q86XI2 1143 aa16.74■□□□□ 0.27
TNF-208ENST00000449264 ANKRD13CQ8N6S4 541 aa16.74■□□□□ 0.27
TNF-208ENST00000449264 TBC1D5Q92609 795 aa16.74■□□□□ 0.27
TNF-208ENST00000449264 MYH7BA7E2Y1 1941 aa16.74■□□□□ 0.27
TNF-208ENST00000449264 GCOM1H8Y6P7 765 aaPredicted RBP16.73■□□□□ 0.27
TNF-208ENST00000449264 MEIS2O14770 477 aa16.73■□□□□ 0.27
TNF-208ENST00000449264 POLR2MP0CAP2 368 aa16.73■□□□□ 0.27
TNF-208ENST00000449264 ATP2B1P20020 1258 aa16.73■□□□□ 0.27
TNF-208ENST00000449264 ERVK-9P63128 1117 aa16.73■□□□□ 0.27
TNF-208ENST00000449264 ERVK-24P63145 666 aa16.73■□□□□ 0.27
TNF-208ENST00000449264 NSMFQ6X4W1 530 aa16.73■□□□□ 0.27
TNF-208ENST00000449264 KRT25Q7Z3Z0 450 aa16.73■□□□□ 0.27
TNF-208ENST00000449264 MCF2L2Q86YR7 1114 aa16.73■□□□□ 0.27
TNF-208ENST00000449264 RIOX2Q8IUF8 465 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms