RNA–Protein interactions for RNA: ENST00000445064.1

SEC13-213, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, human

TSL 5

Gene SEC13, Length 669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEC13-213	ENST00000445064	ARVCF	O00192	962 aa		18.24	■□□□□ 0.51
SEC13-213	ENST00000445064	NSMF	Q6X4W1	530 aa		18.24	■□□□□ 0.51
SEC13-213	ENST00000445064	EEPD1	Q7L9B9	569 aa		18.24	■□□□□ 0.51
SEC13-213	ENST00000445064	TTYH1	Q9H313	450 aa	Predicted RBP	18.24	■□□□□ 0.51
SEC13-213	ENST00000445064	PDGFC	Q9NRA1	345 aa		18.24	■□□□□ 0.51
SEC13-213	ENST00000445064	CYP39A1	Q9NYL5	469 aa		18.24	■□□□□ 0.51
SEC13-213	ENST00000445064	CCPG1	Q9ULG6	757 aa		18.24	■□□□□ 0.51
SEC13-213	ENST00000445064		A0A0U1RQG5	324 aa	Predicted RBP	18.23	■□□□□ 0.51
SEC13-213	ENST00000445064	TRIM6-TRIM34	B2RNG4	842 aa		18.23	■□□□□ 0.51
SEC13-213	ENST00000445064	HSPD1	P10809	573 aa	Known RBP	18.23	■□□□□ 0.51
SEC13-213	ENST00000445064	PTGS1	P23219	599 aa		18.23	■□□□□ 0.51
SEC13-213	ENST00000445064	HAND2	P61296	217 aa		18.23	■□□□□ 0.51
SEC13-213	ENST00000445064	NKX3-2	P78367	333 aa		18.23	■□□□□ 0.51
SEC13-213	ENST00000445064	NMI	Q13287	307 aa	Predicted RBP	18.23	■□□□□ 0.51
SEC13-213	ENST00000445064	ZNF589	Q86UQ0	364 aa	Predicted RBP	18.23	■□□□□ 0.51
SEC13-213	ENST00000445064	DCAF4	Q8WV16	495 aa		18.23	■□□□□ 0.51
SEC13-213	ENST00000445064	RILPL2	Q969X0	211 aa		18.23	■□□□□ 0.51
SEC13-213	ENST00000445064	TMEM47	Q9BQJ4	181 aa		18.23	■□□□□ 0.51
SEC13-213	ENST00000445064	LNPK	Q9C0E8	428 aa		18.23	■□□□□ 0.51
SEC13-213	ENST00000445064	GPCPD1	Q9NPB8	672 aa		18.23	■□□□□ 0.51
SEC13-213	ENST00000445064	TBX21	Q9UL17	535 aa		18.23	■□□□□ 0.51
SEC13-213	ENST00000445064	GNE	Q9Y223	722 aa	Known RBP	18.23	■□□□□ 0.51
SEC13-213	ENST00000445064	MROH7	Q68CQ1	1323 aa		18.23	■□□□□ 0.51
SEC13-213	ENST00000445064	FRMPD2	Q68DX3	1309 aa	Predicted RBP	18.23	■□□□□ 0.51
SEC13-213	ENST00000445064	DYNC1LI2	O43237	492 aa	Predicted RBP	18.22	■□□□□ 0.51
SEC13-213	ENST00000445064	ICAM1	P05362	532 aa		18.22	■□□□□ 0.51
SEC13-213	ENST00000445064	TOP1	P11387	765 aa	Known RBP	18.22	■□□□□ 0.51
SEC13-213	ENST00000445064	SMPD1	P17405	629 aa		18.22	■□□□□ 0.51
SEC13-213	ENST00000445064	TMEM63B	Q5T3F8	832 aa		18.22	■□□□□ 0.51
SEC13-213	ENST00000445064	B4GALNT3	Q6L9W6	998 aa		18.22	■□□□□ 0.51
SEC13-213	ENST00000445064	MFSD5	Q6N075	450 aa		18.22	■□□□□ 0.51
SEC13-213	ENST00000445064	TAPT1	Q6NXT6	567 aa		18.22	■□□□□ 0.51
SEC13-213	ENST00000445064	SYDE2	Q5VT97	1194 aa		18.21	■□□□□ 0.51
SEC13-213	ENST00000445064	IQSEC1	Q6DN90	963 aa		18.21	■□□□□ 0.51
SEC13-213	ENST00000445064	CXCL17	Q6UXB2	119 aa		18.21	■□□□□ 0.51
SEC13-213	ENST00000445064	BTNL9	Q6UXG8	535 aa		18.21	■□□□□ 0.51
SEC13-213	ENST00000445064	C16orf59	Q7L2K0	433 aa		18.21	■□□□□ 0.51
SEC13-213	ENST00000445064	TLK2	Q86UE8	772 aa		18.21	■□□□□ 0.51
SEC13-213	ENST00000445064	FAM126B	Q8IXS8	530 aa		18.21	■□□□□ 0.51
SEC13-213	ENST00000445064	MYLIP	Q8WY64	445 aa		18.21	■□□□□ 0.51
SEC13-213	ENST00000445064	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	18.21	■□□□□ 0.51	7e-14	■■■□□ 15.6
SEC13-213	ENST00000445064	PPP1R12C	Q9BZL4	782 aa		18.21	■□□□□ 0.51
SEC13-213	ENST00000445064	AP5M1	Q9H0R1	490 aa		18.21	■□□□□ 0.51
SEC13-213	ENST00000445064	RANBP17	Q9H2T7	1088 aa	Known RBP	18.21	■□□□□ 0.51
SEC13-213	ENST00000445064	TCP11L1	Q9NUJ3	509 aa		18.21	■□□□□ 0.51
SEC13-213	ENST00000445064	LAMA2	P24043	3122 aa	Known RBP	18.2	■□□□□ 0.5
SEC13-213	ENST00000445064	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	18.2	■□□□□ 0.5
SEC13-213	ENST00000445064	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	18.2	■□□□□ 0.5
SEC13-213	ENST00000445064	TLR3	O15455	904 aa	Known RBP	18.2	■□□□□ 0.5
SEC13-213	ENST00000445064	BAAT	Q14032	418 aa	Predicted RBP	18.2	■□□□□ 0.5
SEC13-213	ENST00000445064	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	18.2	■□□□□ 0.5
SEC13-213	ENST00000445064	FBXO16	Q8IX29	292 aa	Predicted RBP	18.2	■□□□□ 0.5
SEC13-213	ENST00000445064	CD4	P01730	458 aa		18.19	■□□□□ 0.5
SEC13-213	ENST00000445064	CSF2RA	P15509	400 aa		18.19	■□□□□ 0.5
SEC13-213	ENST00000445064	FSCN1	Q16658	493 aa	Known RBP	18.19	■□□□□ 0.5
SEC13-213	ENST00000445064	MFSD6	Q6ZSS7	791 aa		18.19	■□□□□ 0.5
SEC13-213	ENST00000445064	KIAA1211	Q6ZU35	1233 aa		18.19	■□□□□ 0.5
SEC13-213	ENST00000445064	TICAM2	Q86XR7	235 aa		18.19	■□□□□ 0.5
SEC13-213	ENST00000445064	CCDC171	Q6TFL3	1326 aa		18.19	■□□□□ 0.5
SEC13-213	ENST00000445064	NFIB	O00712	420 aa		18.18	■□□□□ 0.5
SEC13-213	ENST00000445064	ACR	P10323	421 aa		18.18	■□□□□ 0.5
SEC13-213	ENST00000445064	PDHB	P11177	359 aa		18.18	■□□□□ 0.5
SEC13-213	ENST00000445064	SDS	P20132	328 aa		18.18	■□□□□ 0.5
SEC13-213	ENST00000445064	PPIG	Q13427	754 aa	Known RBP eCLIP	18.18	■□□□□ 0.5
SEC13-213	ENST00000445064	ITGA7	Q13683	1181 aa		18.18	■□□□□ 0.5
SEC13-213	ENST00000445064	TMEM240	Q5SV17	173 aa		18.18	■□□□□ 0.5
SEC13-213	ENST00000445064	AKNAD1	Q5T1N1	836 aa		18.18	■□□□□ 0.5
SEC13-213	ENST00000445064	TMEM199	Q8N511	208 aa		18.18	■□□□□ 0.5
SEC13-213	ENST00000445064	SLC43A3	Q8NBI5	491 aa		18.18	■□□□□ 0.5
SEC13-213	ENST00000445064	MORC4	Q8TE76	937 aa		18.18	■□□□□ 0.5
SEC13-213	ENST00000445064	TTC14	Q96N46	770 aa		18.18	■□□□□ 0.5
SEC13-213	ENST00000445064	RWDD1	Q9H446	243 aa	Predicted RBP	18.18	■□□□□ 0.5
SEC13-213	ENST00000445064	GRIN2D	O15399	1336 aa		18.18	■□□□□ 0.5
SEC13-213	ENST00000445064	PTPDC1	A2A3K4	754 aa		18.17	■□□□□ 0.5
SEC13-213	ENST00000445064	CABYR	O75952	493 aa		18.17	■□□□□ 0.5
SEC13-213	ENST00000445064	IGHD	P01880	384 aa		18.17	■□□□□ 0.5
SEC13-213	ENST00000445064	DNAJB2	P25686	324 aa		18.17	■□□□□ 0.5
SEC13-213	ENST00000445064	CYP2C18	P33260	490 aa		18.17	■□□□□ 0.5
SEC13-213	ENST00000445064	ALDH5A1	P51649	535 aa	Predicted RBP	18.17	■□□□□ 0.5
SEC13-213	ENST00000445064	TBC1D10C	Q8IV04	446 aa		18.17	■□□□□ 0.5
SEC13-213	ENST00000445064	SMC5	Q8IY18	1101 aa		18.17	■□□□□ 0.5
SEC13-213	ENST00000445064	MAFA	Q8NHW3	353 aa	Predicted RBP	18.17	■□□□□ 0.5
SEC13-213	ENST00000445064	YTHDC1	Q96MU7	727 aa	Known RBP	18.17	■□□□□ 0.5
SEC13-213	ENST00000445064	ZKSCAN3	Q9BRR0	538 aa		18.17	■□□□□ 0.5
SEC13-213	ENST00000445064	VTA1	Q9NP79	307 aa		18.17	■□□□□ 0.5
SEC13-213	ENST00000445064	ADD3	Q9UEY8	706 aa	Known RBP	18.17	■□□□□ 0.5
SEC13-213	ENST00000445064		Q9Y3F1	56 aa		18.17	■□□□□ 0.5
SEC13-213	ENST00000445064	ZMYM6	O95789	1325 aa		18.17	■□□□□ 0.5
SEC13-213	ENST00000445064	GRXCR1	A8MXD5	290 aa		18.16	■□□□□ 0.5
SEC13-213	ENST00000445064	ZEB2	O60315	1214 aa		18.16	■□□□□ 0.5
SEC13-213	ENST00000445064	CALML3	P27482	149 aa		18.16	■□□□□ 0.5
SEC13-213	ENST00000445064	PSMC6	P62333	389 aa		18.16	■□□□□ 0.5
SEC13-213	ENST00000445064	ZNF543	Q08ER8	600 aa		18.16	■□□□□ 0.5
SEC13-213	ENST00000445064	ZNF365	Q70YC5	407 aa		18.16	■□□□□ 0.5
SEC13-213	ENST00000445064	PLEKHM2	Q8IWE5	1019 aa		18.16	■□□□□ 0.5
SEC13-213	ENST00000445064	CLEC4D	Q8WXI8	215 aa		18.16	■□□□□ 0.5
SEC13-213	ENST00000445064	COL25A1	Q9BXS0	654 aa	Predicted RBP	18.16	■□□□□ 0.5
SEC13-213	ENST00000445064	LCT	P09848	1927 aa		18.15	■□□□□ 0.5
SEC13-213	ENST00000445064	TMEM265	A0A087WTH1	108 aa		18.15	■□□□□ 0.5
SEC13-213	ENST00000445064	ZNF213	O14771	459 aa		18.15	■□□□□ 0.5

Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms