RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 CNTNAP3BQ96NU0 1288 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 HHIPQ96QV1 700 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 MAP3K14Q99558 947 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 LGR4Q9BXB1 951 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 CNTNAP3Q9BZ76 1288 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 SLC12A5Q9H2X9 1139 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 PRAMEF27A3QJZ7 478 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 A6NCN8 305 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 GOLGA8AA7E2F4 631 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 GOLGA8BA8MQT2 603 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 PYGLP06737 847 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 BPIP17213 487 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 ATICP31939 592 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 GBP1P32455 592 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 ADCYAP1R1P41586 468 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 POU4F2Q12837 409 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 KRT72Q14CN4 511 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 PRR16Q569H4 304 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 CCDC157Q569K6 752 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 TMEM240Q5SV17 173 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 DARS2Q6PI48 645 aaKnown RBP2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 NYAP1Q6ZVC0 841 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 USP53Q70EK8 1073 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 KLHL6Q8WZ60 621 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 SEC62Q99442 399 aaKnown RBP2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 HAUS7Q99871 368 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 NAA15Q9BXJ9 866 aaKnown RBP2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 PCDHA9Q9Y5H5 950 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 KLRG2A4D1S0 409 aaPredicted RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 SLC22A31A6NKX4 558 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 TIPRLO75663 272 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 SMNDC1O75940 238 aaKnown RBP eCLIP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 CRTAMO95727 393 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 ALDH1A1P00352 501 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 NAT1P18440 290 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 GRK6P43250 576 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 NNTQ13423 1086 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 AGAP9Q5VTM2 703 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 TSHZ3Q63HK5 1081 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 GIMAP8Q8ND71 665 aaPredicted RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 FAM13CQ8NE31 585 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 C1orf162Q8NEQ5 155 aaPredicted RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 NSUN6Q8TEA1 469 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 HDAC2Q92769 488 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 GAL3ST3Q96A11 431 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 ZSCAN31Q96LW9 406 aaPredicted RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 NUP88Q99567 741 aaPredicted RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 CERS4Q9HA82 394 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 TCF7L1Q9HCS4 588 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 TIMMDC1Q9NPL8 285 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 CRTAC1Q9NQ79 661 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 ZNF214Q9UL59 606 aaPredicted RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 AKT3Q9Y243 479 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 TRAF6Q9Y4K3 522 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 SNX13Q9Y5W8 968 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 A0A087WZG4 1122 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 AQP7O14520 342 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 TPP1O14773 563 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 MGEA5O60502 916 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 TLR5O60602 858 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 UPP2O95045 317 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 ZIC2O95409 532 aaPredicted RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 APBA3O96018 575 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 ACRP10323 421 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 POLR2BP30876 1174 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 NRLP54845 237 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 EIF5P55010 431 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 NAP1L1P55209 391 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 SESN3P58005 492 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 PTPN11Q06124 597 aaPredicted RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 PLCB4Q15147 1175 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 TAF11Q15544 211 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 TERF2Q15554 542 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 RASIP1Q5U651 963 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 GGT6Q6P531 493 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 THSD4Q6ZMP0 1018 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 KRT77Q7Z794 578 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 ANKRD23Q86SG2 305 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 CRIPAKQ8N1N5 446 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 MSL3Q8N5Y2 521 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 SLC35G2Q8TBE7 412 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 NXPE3Q969Y0 559 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 CCDC34Q96HJ3 373 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 PPM1MQ96MI6 270 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 SLC6A18Q96N87 628 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 INSM2Q96T92 566 aaPredicted RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 MKRN2Q9H000 416 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 DDX21Q9NR30 783 aaKnown RBP eCLIP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 SAGE1Q9NXZ1 904 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 CDC23Q9UJX2 597 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 LRRFIP2Q9Y608 721 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 AATKQ6ZMQ8 1374 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 ABCC9O60706 1549 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 TCRBV16S1A1N1A0A5B0 115 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 RRN3P2A6NIE6 340 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 KCNH1O95259 989 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 SNRPB2P08579 225 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 ECI1P42126 302 aa2.74□□□□□ -1.97
CCDC88A-208ENST00000444458 GRIA2P42262 883 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms