RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 NOM1Q5C9Z4 860 aaKnown RBP9.2□□□□□ -0.94
CCDC39-201ENST00000442201 CCDC183Q5T5S1 534 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 CCDC73Q6ZRK6 1079 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 KRT25Q7Z3Z0 450 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 FAM160B2Q86V87 743 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 EGFL6Q8IUX8 553 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 CCAR1Q8IX12 1150 aaKnown RBP9.2□□□□□ -0.94
CCDC39-201ENST00000442201 REXO1Q8N1G1 1221 aaKnown RBP9.2□□□□□ -0.94
CCDC39-201ENST00000442201 AMNQ9BXJ7 453 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 TAF1DQ9H5J8 278 aaPredicted RBP9.2□□□□□ -0.94
CCDC39-201ENST00000442201 PRR12Q9ULL5 1215 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 PCDHA6Q9UN73 950 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 PCDHA8Q9Y5H6 950 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 MYH4Q9Y623 1939 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 ADAMTS3O15072 1205 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 PPP1R12BO60237 982 aaPredicted RBP9.2□□□□□ -0.94
CCDC39-201ENST00000442201 PLA2G6O60733 806 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 MRPL12P52815 198 aaKnown RBP9.2□□□□□ -0.94
CCDC39-201ENST00000442201 USP14P54578 494 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 TRAF1Q13077 416 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 PRKG1Q13976 671 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 TTC38Q5R3I4 469 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 WDR18Q9BV38 432 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 FZD1Q9UP38 647 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 PCDHA1Q9Y5I3 950 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 SOCS7O14512 581 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 WDR46O15213 610 aaKnown RBP9.2□□□□□ -0.94
CCDC39-201ENST00000442201 PTPRAP18433 802 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 NF2P35240 595 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 SPP2Q13103 211 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 EAPPQ56P03 285 aaPredicted RBP9.2□□□□□ -0.94
CCDC39-201ENST00000442201 PNMA8AQ86V59 439 aaPredicted RBP9.2□□□□□ -0.94
CCDC39-201ENST00000442201 FBXO11Q86XK2 927 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 FSIP1Q8NA03 581 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 MRPS27Q92552 414 aaKnown RBP9.2□□□□□ -0.94
CCDC39-201ENST00000442201 GLT8D2Q9H1C3 349 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 DDX19AQ9NUU7 478 aaKnown RBP9.2□□□□□ -0.94
CCDC39-201ENST00000442201 DACT1Q9NYF0 836 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 FEM1BQ9UK73 627 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 MYH6P13533 1939 aa9.2□□□□□ -0.94
CCDC39-201ENST00000442201 SSC5DA1L4H1 1573 aa9.19□□□□□ -0.94
CCDC39-201ENST00000442201 SLFN14P0C7P3 912 aa9.19□□□□□ -0.94
CCDC39-201ENST00000442201 NONOQ15233 471 aaKnown RBP eCLIP9.19□□□□□ -0.94
CCDC39-201ENST00000442201 NBPF20Q3BBV1 942 aa9.19□□□□□ -0.94
CCDC39-201ENST00000442201 NOL9Q5SY16 702 aaKnown RBP9.19□□□□□ -0.94
CCDC39-201ENST00000442201 KRI1Q8N9T8 703 aaKnown RBP9.19□□□□□ -0.94
CCDC39-201ENST00000442201 ZNF280CQ8ND82 737 aa9.19□□□□□ -0.94
CCDC39-201ENST00000442201 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.19□□□□□ -0.94
CCDC39-201ENST00000442201 CUL5Q93034 780 aa9.19□□□□□ -0.94
CCDC39-201ENST00000442201 RIC8AQ9NPQ8 531 aa9.19□□□□□ -0.94
CCDC39-201ENST00000442201 ZHX2Q9Y6X8 837 aa9.19□□□□□ -0.94
CCDC39-201ENST00000442201 CUTAO60888 179 aa9.19□□□□□ -0.94
CCDC39-201ENST00000442201 USP2O75604 605 aaPredicted RBP9.19□□□□□ -0.94
CCDC39-201ENST00000442201 ZNF445P59923 1031 aa9.19□□□□□ -0.94
CCDC39-201ENST00000442201 MTMR2Q13614 643 aa9.19□□□□□ -0.94
CCDC39-201ENST00000442201 KIFC2Q96AC6 838 aa9.19□□□□□ -0.94
CCDC39-201ENST00000442201 PSTPIP2Q9H939 334 aa9.19□□□□□ -0.94
CCDC39-201ENST00000442201 CMA1P23946 247 aa9.18□□□□□ -0.94
CCDC39-201ENST00000442201 BACE1P56817 501 aa9.18□□□□□ -0.94
CCDC39-201ENST00000442201 SNAP25P60880 206 aa9.18□□□□□ -0.94
CCDC39-201ENST00000442201 MAP3K9P80192 1104 aa9.18□□□□□ -0.94
CCDC39-201ENST00000442201 FAM160A1Q05DH4 1040 aa9.18□□□□□ -0.94
CCDC39-201ENST00000442201 ZNF174Q15697 407 aa9.18□□□□□ -0.94
CCDC39-201ENST00000442201 JAKMIP3Q5VZ66 844 aa9.18□□□□□ -0.94
CCDC39-201ENST00000442201 DLK2Q6UY11 383 aa9.18□□□□□ -0.94
CCDC39-201ENST00000442201 BIN2Q9UBW5 565 aaPredicted RBP9.18□□□□□ -0.94
CCDC39-201ENST00000442201 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.18□□□□□ -0.94
CCDC39-201ENST00000442201 MORC2Q9Y6X9 1032 aaPredicted RBP9.18□□□□□ -0.94
CCDC39-201ENST00000442201 SYCE3A1L190 88 aa9.18□□□□□ -0.94
CCDC39-201ENST00000442201 NR1I2O75469 434 aa9.18□□□□□ -0.94
CCDC39-201ENST00000442201 PTPREP23469 700 aa9.18□□□□□ -0.94
CCDC39-201ENST00000442201 INF2Q27J81 1249 aa9.18□□□□□ -0.94
CCDC39-201ENST00000442201 CDCA5Q96FF9 252 aa9.18□□□□□ -0.94
CCDC39-201ENST00000442201 NUP62CLQ9H1M0 184 aa9.18□□□□□ -0.94
CCDC39-201ENST00000442201 FBXO28Q9NVF7 368 aa9.18□□□□□ -0.94
CCDC39-201ENST00000442201 CSADQ9Y600 493 aa9.18□□□□□ -0.94
CCDC39-201ENST00000442201 POTECB2RU33 542 aa9.18□□□□□ -0.94
CCDC39-201ENST00000442201 MCM7P33993 719 aa9.18□□□□□ -0.94
CCDC39-201ENST00000442201 IREB2P48200 963 aaKnown RBP9.18□□□□□ -0.94
CCDC39-201ENST00000442201 USH1GQ495M9 461 aa9.18□□□□□ -0.94
CCDC39-201ENST00000442201 PRPF38AQ8NAV1 312 aaKnown RBP9.18□□□□□ -0.94
CCDC39-201ENST00000442201 GOLPH3LQ9H4A5 285 aa9.18□□□□□ -0.94
CCDC39-201ENST00000442201 FBXO2Q9UK22 296 aaPredicted RBP9.18□□□□□ -0.94
CCDC39-201ENST00000442201 SRPRBQ9Y5M8 271 aaKnown RBP9.18□□□□□ -0.94
CCDC39-201ENST00000442201 A0A1B0GVL5 298 aa9.17□□□□□ -0.94
CCDC39-201ENST00000442201 C19orf81C9J6K1 198 aa9.17□□□□□ -0.94
CCDC39-201ENST00000442201 WNT7AO00755 349 aa9.17□□□□□ -0.94
CCDC39-201ENST00000442201 KINO60870 393 aaKnown RBP9.17□□□□□ -0.94
CCDC39-201ENST00000442201 VCAM1P19320 739 aa9.17□□□□□ -0.94
CCDC39-201ENST00000442201 PTGDRQ13258 359 aa9.17□□□□□ -0.94
CCDC39-201ENST00000442201 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.17□□□□□ -0.94
CCDC39-201ENST00000442201 ZNF771Q7L3S4 317 aaPredicted RBP9.17□□□□□ -0.94
CCDC39-201ENST00000442201 NEK8Q86SG6 692 aa9.17□□□□□ -0.94
CCDC39-201ENST00000442201 CLIC6Q96NY7 704 aa9.17□□□□□ -0.94
CCDC39-201ENST00000442201 TANGO6Q9C0B7 1094 aa9.17□□□□□ -0.94
CCDC39-201ENST00000442201 RANBP17Q9H2T7 1088 aaKnown RBP9.17□□□□□ -0.94
CCDC39-201ENST00000442201 EMILIN3Q9NT22 766 aa9.17□□□□□ -0.94
CCDC39-201ENST00000442201 TMEM260Q9NX78 707 aa9.17□□□□□ -0.94
CCDC39-201ENST00000442201 CLEC11AQ9Y240 323 aa9.17□□□□□ -0.94
CCDC39-201ENST00000442201 ATP2C1P98194 919 aaPredicted RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms