RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 STXBP5LQ9Y2K9 1186 aa9.23□□□□□ -0.93
VPS50-204ENST00000438395 DIS3Q9Y2L1 958 aaKnown RBP9.23□□□□□ -0.93
VPS50-204ENST00000438395 A0A0C4DFX4 3053 aa9.23□□□□□ -0.93
VPS50-204ENST00000438395 PRDM1O75626 825 aa9.22□□□□□ -0.93
VPS50-204ENST00000438395 TTLL1O95922 423 aa9.22□□□□□ -0.93
VPS50-204ENST00000438395 PGK1P00558 417 aa9.22□□□□□ -0.93
VPS50-204ENST00000438395 ZNF697Q5TEC3 545 aa9.22□□□□□ -0.93
VPS50-204ENST00000438395 SLC39A5Q6ZMH5 540 aa9.22□□□□□ -0.93
VPS50-204ENST00000438395 LRRC47Q8N1G4 583 aaKnown RBP9.22□□□□□ -0.93
VPS50-204ENST00000438395 ANKRD35Q8N283 1001 aa9.22□□□□□ -0.93
VPS50-204ENST00000438395 MSL3Q8N5Y2 521 aaKnown RBP9.22□□□□□ -0.93
VPS50-204ENST00000438395 NUP133Q8WUM0 1156 aa9.22□□□□□ -0.93
VPS50-204ENST00000438395 OSBP2Q969R2 916 aa9.22□□□□□ -0.93
VPS50-204ENST00000438395 FEM1BQ9UK73 627 aa9.22□□□□□ -0.93
VPS50-204ENST00000438395 FAM184BQ9ULE4 1060 aa9.22□□□□□ -0.93
VPS50-204ENST00000438395 SYNPO2Q9UMS6 1093 aa9.22□□□□□ -0.93
VPS50-204ENST00000438395 ADAMTS5Q9UNA0 930 aa9.22□□□□□ -0.93
VPS50-204ENST00000438395 TTC41PQ6P2S7 1318 aa9.22□□□□□ -0.93
VPS50-204ENST00000438395 A0A0G2JMZ2 1700 aa9.22□□□□□ -0.93
VPS50-204ENST00000438395 ALPK3Q96L96 1907 aa9.21□□□□□ -0.93
VPS50-204ENST00000438395 DCDC2CA8MYV0 355 aa9.21□□□□□ -0.94
VPS50-204ENST00000438395 M0R2C6 588 aa9.21□□□□□ -0.94
VPS50-204ENST00000438395 PQBP1O60828 265 aaKnown RBP9.21□□□□□ -0.94
VPS50-204ENST00000438395 IGHA2P01877 340 aa9.21□□□□□ -0.94
VPS50-204ENST00000438395 RAG1P15918 1043 aa9.21□□□□□ -0.94
VPS50-204ENST00000438395 TLE2Q04725 743 aa9.21□□□□□ -0.94
VPS50-204ENST00000438395 ZNF792Q3KQV3 632 aa9.21□□□□□ -0.94
VPS50-204ENST00000438395 METTL3Q86U44 580 aaKnown RBP9.21□□□□□ -0.94
VPS50-204ENST00000438395 VTI1AQ96AJ9 217 aa9.21□□□□□ -0.94
VPS50-204ENST00000438395 CEP95Q96GE4 821 aa9.21□□□□□ -0.94
VPS50-204ENST00000438395 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.21□□□□□ -0.94
VPS50-204ENST00000438395 EPB41L4AQ9HCS5 686 aaPredicted RBP9.21□□□□□ -0.94
VPS50-204ENST00000438395 PDLIM7Q9NR12 457 aa9.21□□□□□ -0.94
VPS50-204ENST00000438395 HOMER2Q9NSB8 354 aa9.21□□□□□ -0.94
VPS50-204ENST00000438395 MTMR10Q9NXD2 777 aa9.21□□□□□ -0.94
VPS50-204ENST00000438395 MTMR4Q9NYA4 1195 aa9.21□□□□□ -0.94
VPS50-204ENST00000438395 PHF24Q9UPV7 400 aa9.21□□□□□ -0.94
VPS50-204ENST00000438395 TACC3Q9Y6A5 838 aa9.21□□□□□ -0.94
VPS50-204ENST00000438395 SYNGAP1Q96PV0 1343 aa9.21□□□□□ -0.94
VPS50-204ENST00000438395 A0A1W2PQ45 241 aaPredicted RBP9.2□□□□□ -0.94
VPS50-204ENST00000438395 A0A1W2PQY0 241 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 PATL2C9JE40 543 aaKnown RBP9.2□□□□□ -0.94
VPS50-204ENST00000438395 DLL1O00548 723 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 RGS20O76081 388 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 CLTBP09497 229 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 FDX1P10109 184 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 TAL1P17542 331 aaPredicted RBP9.2□□□□□ -0.94
VPS50-204ENST00000438395 MX1P20591 662 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 SLC1A4P43007 532 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 STAT2P52630 851 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 OAZ1P54368 228 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 PPARAQ07869 468 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 SLFN13Q68D06 897 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 FAM109BQ6ICB4 259 aaPredicted RBP9.2□□□□□ -0.94
VPS50-204ENST00000438395 CCDC174Q6PII3 467 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 BLOC1S3Q6QNY0 202 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 NOL8Q76FK4 1167 aaKnown RBP9.2□□□□□ -0.94
VPS50-204ENST00000438395 FAM160B2Q86V87 743 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 GPIHBP1Q8IV16 184 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 IFNL3Q8IZI9 196 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 GMCL1P1Q8NEA9 526 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 CHST13Q8NET6 341 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 CHURC1Q8WUH1 139 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 BADQ92934 168 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 LENG1Q96BZ8 264 aaPredicted RBP9.2□□□□□ -0.94
VPS50-204ENST00000438395 RNPC3Q96LT9 517 aaKnown RBP9.2□□□□□ -0.94
VPS50-204ENST00000438395 FAM161BQ96MY7 647 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 RAVER2Q9HCJ3 691 aaKnown RBP9.2□□□□□ -0.94
VPS50-204ENST00000438395 STARD7Q9NQZ5 370 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 TOMM22Q9NS69 142 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 TMEM39AQ9NV64 488 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 STX8Q9UNK0 236 aa9.2□□□□□ -0.94
VPS50-204ENST00000438395 MYH8P13535 1937 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 BAZ2AQ9UIF9 1905 aaKnown RBP9.19□□□□□ -0.94
VPS50-204ENST00000438395 MOXD2PA6NHM9 499 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 TSPY2A6NKD2 308 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 TMEM232C9JQI7 657 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 ATP2A1O14983 1001 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 CFHP08603 1231 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 C6orf222P0C671 652 aaPredicted RBP9.19□□□□□ -0.94
VPS50-204ENST00000438395 BMP3P12645 472 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 ACLYP53396 1101 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 TFAP4Q01664 338 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 FPGSQ05932 587 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 SNX17Q15036 470 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 CCDC96Q2M329 555 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 C1orf53Q5VUE5 145 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 PPP1R18Q6NYC8 613 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 PCSK9Q8NBP7 692 aaKnown RBP9.19□□□□□ -0.94
VPS50-204ENST00000438395 REPS2Q8NFH8 660 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 NEDD1Q8NHV4 660 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 GLT1D1Q96MS3 346 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 TSEN34Q9BSV6 310 aaKnown RBP9.19□□□□□ -0.94
VPS50-204ENST00000438395 ACAD9Q9H845 621 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 SLC38A10Q9HBR0 1119 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 PCDHB3Q9Y5E6 796 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 MROH7Q68CQ1 1323 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 SYNRGQ9UMZ2 1314 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 PLIN4Q96Q06 1357 aa9.19□□□□□ -0.94
VPS50-204ENST00000438395 DNAH12Q6ZR08 3092 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms