RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 PI4K2BQ8TCG2 481 aa13.21□□□□□ -0.29
CCDC88A-207ENST00000436346 FEZ2Q9UHY8 353 aaPredicted RBP13.21□□□□□ -0.29
CCDC88A-207ENST00000436346 TRPC5Q9UL62 973 aaPredicted RBP13.21□□□□□ -0.29
CCDC88A-207ENST00000436346 S100BP04271 92 aaPredicted RBP13.21□□□□□ -0.29
CCDC88A-207ENST00000436346 TFDP1Q14186 410 aa13.21□□□□□ -0.29
CCDC88A-207ENST00000436346 LONRF2Q1L5Z9 754 aa13.21□□□□□ -0.29
CCDC88A-207ENST00000436346 KIAA1841Q6NSI8 718 aa13.21□□□□□ -0.29
CCDC88A-207ENST00000436346 MIS12Q9H081 205 aa13.21□□□□□ -0.29
CCDC88A-207ENST00000436346 ADGRL2O95490 1459 aa13.21□□□□□ -0.29
CCDC88A-207ENST00000436346 ATP7BP35670 1465 aa13.21□□□□□ -0.29
CCDC88A-207ENST00000436346 TTBK2Q6IQ55 1244 aa13.21□□□□□ -0.3
CCDC88A-207ENST00000436346 PALM2Q8IXS6 379 aa13.21□□□□□ -0.3
CCDC88A-207ENST00000436346 TESK2Q96S53 571 aa13.21□□□□□ -0.3
CCDC88A-207ENST00000436346 KLRF2D3W0D1 207 aa13.21□□□□□ -0.3
CCDC88A-207ENST00000436346 CASQ2O14958 399 aaPredicted RBP13.21□□□□□ -0.3
CCDC88A-207ENST00000436346 RSRC2Q7L4I2 434 aaKnown RBP13.21□□□□□ -0.3
CCDC88A-207ENST00000436346 TMTC1Q8IUR5 882 aa13.21□□□□□ -0.3
CCDC88A-207ENST00000436346 PCDHB4Q9Y5E5 795 aa13.21□□□□□ -0.3
CCDC88A-207ENST00000436346 PTPREP23469 700 aa13.21□□□□□ -0.3
CCDC88A-207ENST00000436346 ADCY8P40145 1251 aa13.21□□□□□ -0.3
CCDC88A-207ENST00000436346 RETREG2Q8NC44 543 aa13.21□□□□□ -0.3
CCDC88A-207ENST00000436346 P3H4Q92791 437 aa13.21□□□□□ -0.3
CCDC88A-207ENST00000436346 ABCA8O94911 1581 aa13.21□□□□□ -0.3
CCDC88A-207ENST00000436346 MTMR3Q13615 1198 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 MYOCDQ8IZQ8 938 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 SLF1Q9BQI6 1058 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 NLRC4Q9NPP4 1024 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 HESX1Q9UBX0 185 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 ANAPC5Q9UJX4 755 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 ZNF75DP51815 510 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 IMPACTQ9P2X3 320 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 UBN2Q6ZU65 1347 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 DALRD3Q5D0E6 543 aaKnown RBP13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 MIS18BP1Q6P0N0 1132 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 ATP2B4P23634 1241 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 PAK2Q13177 524 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 TBC1D10BQ4KMP7 808 aaPredicted RBP13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 MIPOL1Q8TD10 442 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 SMYD2Q9NRG4 433 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 ZNF215Q9UL58 517 aaPredicted RBP13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 THAP12O43422 761 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 OR52Z1P0C646 297 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 PNMA2Q9UL42 364 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 SPDYE2BA6NHP3 402 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 SPDYE6P0CI01 402 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 PCK1P35558 622 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 SNX25Q9H3E2 840 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 RIC8AQ9NPQ8 531 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 ECE1P42892 770 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 TMTC4Q5T4D3 741 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 KSR1Q8IVT5 923 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 PPM1KQ8N3J5 372 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 MYH1P12882 1939 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 MYH4Q9Y623 1939 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 PLEKHG3A1L390 1219 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 TRIM35Q9UPQ4 493 aa13.2□□□□□ -0.3
CCDC88A-207ENST00000436346 MYO18AQ92614 2054 aaKnown RBP13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 LOC102724428A0A0B4J2F2 783 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 GUCY2FP51841 1108 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 SIK1P57059 783 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 TUBB2AQ13885 445 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 PPFIBP2Q8ND30 876 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 CCDC127Q96BQ5 260 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 TUBB2BQ9BVA1 445 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 KRIT1O00522 736 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 ZBTB7BO15156 539 aaPredicted RBP13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 SCG2P13521 617 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 ATP5JP18859 108 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 RXRBP28702 533 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 PPFIA1Q13136 1202 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 PRPSAP1Q14558 356 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 RTEL1Q9NZ71 1219 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 PARP2Q9UGN5 583 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 DDAH1O94760 285 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 MYL7Q01449 175 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 ARHGAP24Q8N264 748 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 SLC17A8Q8NDX2 589 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 ANKRD36BP1Q96IX9 119 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 ARMCX3Q9UH62 379 aaPredicted RBP13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 ATP8B3O60423 1300 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 MAP3K15Q6ZN16 1313 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 CEP120Q8N960 986 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 IQCDQ96DY2 449 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 DDX41Q9UJV9 622 aaKnown RBP13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 GIGYF1O75420 1035 aaPredicted RBP13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 SF3A3Q12874 501 aaKnown RBP eCLIP13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 NEK8Q86SG6 692 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 CBX8Q9HC52 389 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 A0A0D9SFI3 127 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 GOLGA8CPA6NN73 597 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 KIF3CO14782 793 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 FAM196AQ6ZSG2 479 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 CCDC13Q8IYE1 715 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 PLA2G4DQ86XP0 818 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 GRK7Q8WTQ7 553 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 CHMP6Q96FZ7 201 aa13.19□□□□□ -0.3
CCDC88A-207ENST00000436346 M0R2C6 588 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 CHL1O00533 1208 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 NDUFAB1O14561 156 aa13.18□□□□□ -0.3
CCDC88A-207ENST00000436346 RUFY4Q6ZNE9 571 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms