RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 JAMLQ86YT9 394 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.47□□□□□ -1.53
HMGB3-203ENST00000430118 SYTL5Q8TDW5 730 aaPredicted RBP5.47□□□□□ -1.53
HMGB3-203ENST00000430118 KCTD13Q8WZ19 329 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 KREMEN1Q96MU8 473 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 CLUHP3Q96NS8 147 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 TARS2Q9BW92 718 aaKnown RBP5.47□□□□□ -1.53
HMGB3-203ENST00000430118 TRIM39Q9HCM9 518 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 GP6Q9HCN6 339 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 TCEAL9Q9UHQ7 104 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 DIS3Q9Y2L1 958 aaKnown RBP5.47□□□□□ -1.53
HMGB3-203ENST00000430118 SUGT1Q9Y2Z0 365 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 PCDHB12Q9Y5F1 795 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 MIA2Q96PC5 1412 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 SPATA31A6Q5VVP1 1343 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 WASHC2CQ9Y4E1 1318 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 B4E1Z4 1266 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 SHOXO15266 292 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 PRODHO43272 600 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 BRINP1O60477 761 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 WISP1O95388 367 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 CPP00450 1065 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 C6orf222P0C671 652 aaPredicted RBP5.46□□□□□ -1.54
HMGB3-203ENST00000430118 HOXB4P17483 251 aaPredicted RBP5.46□□□□□ -1.54
HMGB3-203ENST00000430118 HOXC12P31275 282 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 FLT3P36888 993 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 KCNMA1Q12791 1236 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 YOD1Q5VVQ6 348 aaPredicted RBP5.46□□□□□ -1.54
HMGB3-203ENST00000430118 DCAF15Q66K64 600 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 DYMQ7RTS9 669 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 C2CD4AQ8NCU7 369 aaPredicted RBP5.46□□□□□ -1.54
HMGB3-203ENST00000430118 PTPRN2Q92932 1015 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 DPH2Q9BQC3 489 aaPredicted RBP5.46□□□□□ -1.54
HMGB3-203ENST00000430118 ORAI3Q9BRQ5 295 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 YIPF2Q9BWQ6 316 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 CEP41Q9BYV8 373 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 ACSS3Q9H6R3 686 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 SSU72Q9NP77 194 aaKnown RBP5.46□□□□□ -1.54
HMGB3-203ENST00000430118 ENAMQ9NRM1 1142 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 AKT3Q9Y243 479 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 ZNF451Q9Y4E5 1061 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 ACTL7BQ9Y614 415 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 RTEL1-TNFRSF6BF6WH68 1400 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 FGD6Q6ZV73 1430 aa5.46□□□□□ -1.54
HMGB3-203ENST00000430118 PHLPP1O60346 1717 aa5.45□□□□□ -1.54
HMGB3-203ENST00000430118 MSH6P52701 1360 aa5.45□□□□□ -1.54
HMGB3-203ENST00000430118 ABCC3O15438 1527 aa5.45□□□□□ -1.54
HMGB3-203ENST00000430118 KRBA1A5PL33 1030 aa5.45□□□□□ -1.54
HMGB3-203ENST00000430118 RNGTTO60942 597 aaKnown RBP5.45□□□□□ -1.54
HMGB3-203ENST00000430118 EYA4O95677 639 aa5.45□□□□□ -1.54
HMGB3-203ENST00000430118 CELA2BP08218 269 aaPredicted RBP5.45□□□□□ -1.54
HMGB3-203ENST00000430118 IGFALSP35858 605 aa5.45□□□□□ -1.54
HMGB3-203ENST00000430118 C21orf62-AS1Q17RA5 79 aa5.45□□□□□ -1.54
HMGB3-203ENST00000430118 RNF219Q5W0B1 726 aaPredicted RBP5.45□□□□□ -1.54
HMGB3-203ENST00000430118 LETMD1Q6P1Q0 360 aa5.45□□□□□ -1.54
HMGB3-203ENST00000430118 C12orf50Q8NA57 414 aaPredicted RBP5.45□□□□□ -1.54
HMGB3-203ENST00000430118 PPP1R14AQ96A00 147 aa5.45□□□□□ -1.54
HMGB3-203ENST00000430118 C8orf48Q96LL4 319 aa5.45□□□□□ -1.54
HMGB3-203ENST00000430118 FGD4Q96M96 766 aa5.45□□□□□ -1.54
HMGB3-203ENST00000430118 CFDP1Q9UEE9 299 aaPredicted RBP5.45□□□□□ -1.54
HMGB3-203ENST00000430118 CGGBP1Q9UFW8 167 aaPredicted RBP5.45□□□□□ -1.54
HMGB3-203ENST00000430118 SF3B6Q9Y3B4 125 aaKnown RBP5.45□□□□□ -1.54
HMGB3-203ENST00000430118 EID1Q9Y6B2 187 aa5.45□□□□□ -1.54
HMGB3-203ENST00000430118 NKTRP30414 1462 aaKnown RBP5.45□□□□□ -1.54
HMGB3-203ENST00000430118 DHX29Q7Z478 1369 aaKnown RBP5.44□□□□□ -1.54
HMGB3-203ENST00000430118 CCNB3Q8WWL7 1395 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 GNB5O14775 395 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 DLX3O60479 287 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 DNAJC8O75937 253 aaPredicted RBP5.44□□□□□ -1.54
HMGB3-203ENST00000430118 CYP7A1P22680 504 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 RXRBP28702 533 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 GFRA1P56159 465 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 RBM10P98175 930 aaKnown RBP5.44□□□□□ -1.54
HMGB3-203ENST00000430118 UVSSAQ2YD98 709 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 NBPF9Q3BBW0 867 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 Q6ZS46 218 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 BRAPQ7Z569 592 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 UBE3DQ7Z6J8 389 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 KIF18BQ86Y91 864 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 ATL2Q8NHH9 583 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 CASKIN1Q8WXD9 1431 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 EZH1Q92800 747 aaPredicted RBP5.44□□□□□ -1.54
HMGB3-203ENST00000430118 ZFYVE21Q9BQ24 234 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 NKX2-4Q9H2Z4 354 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 CYP26B1Q9NR63 512 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 FAM105AQ9NUU6 356 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 FAM86C1Q9NVL1 165 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 G3BP2Q9UN86 482 aaKnown RBP5.44□□□□□ -1.54
HMGB3-203ENST00000430118 STRCP1A6NGW2 1772 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 FYCO1Q9BQS8 1478 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 ARHGAP35Q9NRY4 1499 aa5.44□□□□□ -1.54
HMGB3-203ENST00000430118 SRCAPQ6ZRS2 3230 aa5.43□□□□□ -1.54
HMGB3-203ENST00000430118 CCDC194A0A1B0GVG4 234 aa5.43□□□□□ -1.54
HMGB3-203ENST00000430118 F8W735 103 aaPredicted RBP5.43□□□□□ -1.54
HMGB3-203ENST00000430118 AQP7O14520 342 aa5.43□□□□□ -1.54
HMGB3-203ENST00000430118 SDSP20132 328 aa5.43□□□□□ -1.54
HMGB3-203ENST00000430118 GRIA2P42262 883 aa5.43□□□□□ -1.54
HMGB3-203ENST00000430118 TRIM28Q13263 835 aaKnown RBP5.43□□□□□ -1.54
HMGB3-203ENST00000430118 TESK1Q15569 626 aa5.43□□□□□ -1.54
HMGB3-203ENST00000430118 NOL9Q5SY16 702 aaKnown RBP5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms