RNA–Protein interactions for RNA: ENST00000428313.5

C9orf3-206, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 2,288 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-206ENST00000428313 RETREG2Q8NC44 543 aa17.82■□□□□ 0.44
C9orf3-206ENST00000428313 ZNF507Q8TCN5 953 aa17.82■□□□□ 0.44
C9orf3-206ENST00000428313 RAPGEF5Q92565 580 aa17.82■□□□□ 0.44
C9orf3-206ENST00000428313 ALS2CR12Q96Q35 445 aa17.82■□□□□ 0.44
C9orf3-206ENST00000428313 SH2D4AQ9H788 454 aa17.82■□□□□ 0.44
C9orf3-206ENST00000428313 RBM12Q9NTZ6 932 aaKnown RBP17.82■□□□□ 0.44
C9orf3-206ENST00000428313 TBC1D2BQ9UPU7 963 aa17.82■□□□□ 0.44
C9orf3-206ENST00000428313 LMO7Q8WWI1 1683 aa17.82■□□□□ 0.44
C9orf3-206ENST00000428313 MMP1P03956 469 aa17.81■□□□□ 0.44
C9orf3-206ENST00000428313 IGKV5-2P06315 115 aa17.81■□□□□ 0.44
C9orf3-206ENST00000428313 DRD4P21917 467 aa17.81■□□□□ 0.44
C9orf3-206ENST00000428313 PPP2R2AP63151 447 aa17.81■□□□□ 0.44
C9orf3-206ENST00000428313 MRPS25P82663 173 aaKnown RBP17.81■□□□□ 0.44
C9orf3-206ENST00000428313 TEX9Q8N6V9 391 aa17.81■□□□□ 0.44
C9orf3-206ENST00000428313 ZFAND2BQ8WV99 257 aa17.81■□□□□ 0.44
C9orf3-206ENST00000428313 PHKBQ93100 1093 aa17.81■□□□□ 0.44
C9orf3-206ENST00000428313 ZFATQ9P243 1243 aa17.81■□□□□ 0.44
C9orf3-206ENST00000428313 DUSP10Q9Y6W6 482 aa17.81■□□□□ 0.44
C9orf3-206ENST00000428313 PDS5AQ29RF7 1337 aaKnown RBP17.81■□□□□ 0.44
C9orf3-206ENST00000428313 ATP2C2O75185 946 aa17.81■□□□□ 0.44
C9orf3-206ENST00000428313 HEXIM1O94992 359 aaKnown RBP17.81■□□□□ 0.44
C9orf3-206ENST00000428313 HAND2P61296 217 aa17.81■□□□□ 0.44
C9orf3-206ENST00000428313 NFRKBQ6P4R8 1299 aa17.81■□□□□ 0.44
C9orf3-206ENST00000428313 USP49Q70CQ1 688 aa17.81■□□□□ 0.44
C9orf3-206ENST00000428313 KLHL23Q8NBE8 558 aa17.81■□□□□ 0.44
C9orf3-206ENST00000428313 CCDC197Q8NCU1 140 aa17.81■□□□□ 0.44
C9orf3-206ENST00000428313 AGAP11Q8TF27 550 aa17.81■□□□□ 0.44
C9orf3-206ENST00000428313 EPB41L5Q9HCM4 733 aa17.81■□□□□ 0.44
C9orf3-206ENST00000428313 KCNMB3Q9NPA1 279 aa17.81■□□□□ 0.44
C9orf3-206ENST00000428313 TSKSQ9UJT2 592 aa17.81■□□□□ 0.44
C9orf3-206ENST00000428313 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.81■□□□□ 0.44
C9orf3-206ENST00000428313 NUTM2BA6NNL0 878 aaPredicted RBP17.8■□□□□ 0.44
C9orf3-206ENST00000428313 NUTM2EB1AL46 878 aaPredicted RBP17.8■□□□□ 0.44
C9orf3-206ENST00000428313 H7C1D1 291 aa17.8■□□□□ 0.44
C9orf3-206ENST00000428313 FOXP2O15409 715 aa17.8■□□□□ 0.44
C9orf3-206ENST00000428313 CCNG1P51959 295 aa17.8■□□□□ 0.44
C9orf3-206ENST00000428313 ITIH4Q14624 930 aa17.8■□□□□ 0.44
C9orf3-206ENST00000428313 CPLX4Q7Z7G2 160 aa17.8■□□□□ 0.44
C9orf3-206ENST00000428313 TTYH3Q9C0H2 523 aa17.8■□□□□ 0.44
C9orf3-206ENST00000428313 CAPN6Q9Y6Q1 641 aa17.8■□□□□ 0.44
C9orf3-206ENST00000428313 ABCC12Q96J65 1359 aa17.8■□□□□ 0.44
C9orf3-206ENST00000428313 HEG1Q9ULI3 1381 aa17.8■□□□□ 0.44
C9orf3-206ENST00000428313 A0A087X0B3 334 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 BTBD11A6QL63 1104 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 RANBP6O60518 1105 aaKnown RBP17.79■□□□□ 0.44
C9orf3-206ENST00000428313 PSMD2Q13200 908 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 SPA17Q15506 151 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 CFAP221Q4G0U5 840 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 RRAGBQ5VZM2 374 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 APOA5Q6Q788 366 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 ANKS4BQ8N8V4 417 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 L3MBTL1Q9Y468 752 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 NEURL1BA8MQ27 555 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 BTBD18B2RXH4 712 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 ABLIM1O14639 778 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 FGAP02671 866 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 CSB-PGBD3P0DP91 1061 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 EEF1GP26641 437 aaKnown RBP17.79■□□□□ 0.44
C9orf3-206ENST00000428313 GUCY2FP51841 1108 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 ZBED6P86452 979 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 GUCY2DQ02846 1103 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 GCKRQ14397 625 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 RABL6Q3YEC7 729 aaPredicted RBP17.79■□□□□ 0.44
C9orf3-206ENST00000428313 DIS3L2Q8IYB7 885 aaKnown RBP17.79■□□□□ 0.44
C9orf3-206ENST00000428313 NELFBQ8WX92 580 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 IFT81Q8WYA0 676 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 CENPTQ96BT3 561 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 PAPOLBQ9NRJ5 636 aaKnown RBP17.79■□□□□ 0.44
C9orf3-206ENST00000428313 LRWD1Q9UFC0 647 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 ZBTB12Q9Y330 459 aaPredicted RBP17.79■□□□□ 0.44
C9orf3-206ENST00000428313 PCDHB6Q9Y5E3 794 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 RPS6KL1Q9Y6S9 549 aa17.79■□□□□ 0.44
C9orf3-206ENST00000428313 H0YGN5 161 aa17.78■□□□□ 0.44
C9orf3-206ENST00000428313 DIAPH2O60879 1101 aa17.78■□□□□ 0.44
C9orf3-206ENST00000428313 CLTAP09496 248 aa17.78■□□□□ 0.44
C9orf3-206ENST00000428313 PARP1P09874 1014 aaKnown RBP17.78■□□□□ 0.44
C9orf3-206ENST00000428313 SSRP1Q08945 709 aaKnown RBP17.78■□□□□ 0.44
C9orf3-206ENST00000428313 SEPT2Q15019 361 aa17.78■□□□□ 0.44
C9orf3-206ENST00000428313 IFI16Q16666 785 aaKnown RBP17.78■□□□□ 0.44
C9orf3-206ENST00000428313 CCDC96Q2M329 555 aa17.78■□□□□ 0.44
C9orf3-206ENST00000428313 CACNA2D4Q7Z3S7 1137 aa17.78■□□□□ 0.44
C9orf3-206ENST00000428313 NUP133Q8WUM0 1156 aa17.78■□□□□ 0.44
C9orf3-206ENST00000428313 CASKIN2Q8WXE0 1202 aa17.78■□□□□ 0.44
C9orf3-206ENST00000428313 OSBP2Q969R2 916 aa17.78■□□□□ 0.44
C9orf3-206ENST00000428313 TSC22D3Q99576 134 aa17.78■□□□□ 0.44
C9orf3-206ENST00000428313 CNOT10Q9H9A5 744 aaKnown RBP17.78■□□□□ 0.44
C9orf3-206ENST00000428313 GPR108Q9NPR9 543 aa17.78■□□□□ 0.44
C9orf3-206ENST00000428313 TAOK2Q9UL54 1235 aa17.78■□□□□ 0.44
C9orf3-206ENST00000428313 NFS1Q9Y697 457 aa17.78■□□□□ 0.44
C9orf3-206ENST00000428313 MARF1Q9Y4F3 1742 aaKnown RBP17.78■□□□□ 0.44
C9orf3-206ENST00000428313 STXBP3O00186 592 aa17.78■□□□□ 0.44
C9orf3-206ENST00000428313 COQ9O75208 318 aa17.78■□□□□ 0.44
C9orf3-206ENST00000428313 FMNL1O95466 1100 aaPredicted RBP17.78■□□□□ 0.44
C9orf3-206ENST00000428313 ATP4AP20648 1035 aa17.78■□□□□ 0.44
C9orf3-206ENST00000428313 DNM2P50570 870 aa17.78■□□□□ 0.44
C9orf3-206ENST00000428313 RBM5P52756 815 aaKnown RBP eCLIP17.78■□□□□ 0.442e-7■■■■□ 26.1
C9orf3-206ENST00000428313 NEXNQ0ZGT2 675 aa17.78■□□□□ 0.44
C9orf3-206ENST00000428313 PDIA5Q14554 519 aa17.78■□□□□ 0.44
C9orf3-206ENST00000428313 KIAA0753Q2KHM9 967 aa17.78■□□□□ 0.44
C9orf3-206ENST00000428313 MTHFD1LQ6UB35 978 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms