RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 KANSL2Q9H9L4 492 aa6.17□□□□□ -1.42
USP40-204ENST00000427947 CLEC1BQ9P126 229 aa6.17□□□□□ -1.42
USP40-204ENST00000427947 EBF1Q9UH73 591 aa6.17□□□□□ -1.42
USP40-204ENST00000427947 OAS3Q9Y6K5 1087 aaKnown RBP6.17□□□□□ -1.42
USP40-204ENST00000427947 TRBV23-1A0A0A0MS06 115 aa6.16□□□□□ -1.42
USP40-204ENST00000427947 DLX3O60479 287 aa6.16□□□□□ -1.42
USP40-204ENST00000427947 TBC1D8O95759 1140 aa6.16□□□□□ -1.42
USP40-204ENST00000427947 SCG5P05408 212 aa6.16□□□□□ -1.42
USP40-204ENST00000427947 PLS3P13797 630 aa6.16□□□□□ -1.42
USP40-204ENST00000427947 L1CAMP32004 1257 aa6.16□□□□□ -1.42
USP40-204ENST00000427947 CYP4F3Q08477 520 aa6.16□□□□□ -1.42
USP40-204ENST00000427947 LAPTM5Q13571 262 aa6.16□□□□□ -1.42
USP40-204ENST00000427947 LONRF2Q1L5Z9 754 aa6.16□□□□□ -1.42
USP40-204ENST00000427947 FAM209AQ5JX71 171 aa6.16□□□□□ -1.42
USP40-204ENST00000427947 Q8N3U1 123 aa6.16□□□□□ -1.42
USP40-204ENST00000427947 ANKS4BQ8N8V4 417 aa6.16□□□□□ -1.42
USP40-204ENST00000427947 JMYQ8N9B5 988 aa6.16□□□□□ -1.42
USP40-204ENST00000427947 ZSWIM2Q8NEG5 633 aa6.16□□□□□ -1.42
USP40-204ENST00000427947 FRS2Q8WU20 508 aa6.16□□□□□ -1.42
USP40-204ENST00000427947 LINC01599Q8WXQ3 324 aa6.16□□□□□ -1.42
USP40-204ENST00000427947 HHIPL1Q96JK4 782 aa6.16□□□□□ -1.42
USP40-204ENST00000427947 RNPC3Q96LT9 517 aaKnown RBP6.16□□□□□ -1.42
USP40-204ENST00000427947 C19orf73Q9NVV2 129 aa6.16□□□□□ -1.42
USP40-204ENST00000427947 TNFRSF10DQ9UBN6 386 aa6.16□□□□□ -1.42
USP40-204ENST00000427947 TMA7Q9Y2S6 64 aaKnown RBP6.16□□□□□ -1.42
USP40-204ENST00000427947 NPHP3-ACAD11A0A0J9YXS1 232 aa6.15□□□□□ -1.42
USP40-204ENST00000427947 PAMP19021 973 aa6.15□□□□□ -1.42
USP40-204ENST00000427947 ERVFC1P60507 584 aa6.15□□□□□ -1.42
USP40-204ENST00000427947 CHRNEQ04844 493 aa6.15□□□□□ -1.42
USP40-204ENST00000427947 MAP4K2Q12851 820 aa6.15□□□□□ -1.42
USP40-204ENST00000427947 SQSTM1Q13501 440 aa6.15□□□□□ -1.42
USP40-204ENST00000427947 TMEM67Q5HYA8 995 aa6.15□□□□□ -1.42
USP40-204ENST00000427947 CEP128Q6ZU80 1094 aa6.15□□□□□ -1.42
USP40-204ENST00000427947 PPIL6Q8IXY8 311 aa6.15□□□□□ -1.42
USP40-204ENST00000427947 OXR1Q8N573 874 aa6.15□□□□□ -1.42
USP40-204ENST00000427947 TMEM52Q8NDY8 209 aa6.15□□□□□ -1.42
USP40-204ENST00000427947 PDZD8Q8NEN9 1154 aa6.15□□□□□ -1.42
USP40-204ENST00000427947 OSBP2Q969R2 916 aa6.15□□□□□ -1.42
USP40-204ENST00000427947 C1orf159Q96HA4 380 aa6.15□□□□□ -1.42
USP40-204ENST00000427947 EXOC2Q96KP1 924 aa6.15□□□□□ -1.42
USP40-204ENST00000427947 SLC26A8Q96RN1 970 aa6.15□□□□□ -1.42
USP40-204ENST00000427947 TBX22Q9Y458 520 aa6.15□□□□□ -1.42
USP40-204ENST00000427947 TRBV23OR9-2A0A075B6M9 112 aa6.14□□□□□ -1.43
USP40-204ENST00000427947 ESYT3A0FGR9 886 aa6.14□□□□□ -1.43
USP40-204ENST00000427947 TLDC2A0PJX2 215 aa6.14□□□□□ -1.43
USP40-204ENST00000427947 FITM1A5D6W6 292 aa6.14□□□□□ -1.43
USP40-204ENST00000427947 FADS2P1A8MWK0 482 aa6.14□□□□□ -1.43
USP40-204ENST00000427947 MEFVO15553 781 aaPredicted RBP6.14□□□□□ -1.43
USP40-204ENST00000427947 GDNFP39905 211 aa6.14□□□□□ -1.43
USP40-204ENST00000427947 KIR2DL1P43626 348 aaPredicted RBP6.14□□□□□ -1.43
USP40-204ENST00000427947 KIR2DL2P43627 348 aaPredicted RBP6.14□□□□□ -1.43
USP40-204ENST00000427947 RTP1P59025 263 aa6.14□□□□□ -1.43
USP40-204ENST00000427947 SLC14A2Q15849 920 aa6.14□□□□□ -1.43
USP40-204ENST00000427947 ZC3H12BQ5HYM0 836 aaKnown RBP6.14□□□□□ -1.43
USP40-204ENST00000427947 SLC35F1Q5T1Q4 408 aa6.14□□□□□ -1.43
USP40-204ENST00000427947 HLA-DQA1Q5Y7H0 255 aa6.14□□□□□ -1.43
USP40-204ENST00000427947 USP53Q70EK8 1073 aa6.14□□□□□ -1.43
USP40-204ENST00000427947 CPNE8Q86YQ8 564 aa6.14□□□□□ -1.43
USP40-204ENST00000427947 JAMLQ86YT9 394 aa6.14□□□□□ -1.43
USP40-204ENST00000427947 SPPL2CQ8IUH8 684 aa6.14□□□□□ -1.43
USP40-204ENST00000427947 SCUBE1Q8IWY4 988 aa6.14□□□□□ -1.43
USP40-204ENST00000427947 KREMEN2Q8NCW0 462 aa6.14□□□□□ -1.43
USP40-204ENST00000427947 NPLOC4Q8TAT6 608 aa6.14□□□□□ -1.43
USP40-204ENST00000427947 DHRS4Q9BTZ2 278 aa6.14□□□□□ -1.43
USP40-204ENST00000427947 TMEFF2Q9UIK5 374 aaPredicted RBP6.14□□□□□ -1.43
USP40-204ENST00000427947 CTNND2Q9UQB3 1225 aa6.14□□□□□ -1.43
USP40-204ENST00000427947 MRPS23Q9Y3D9 190 aaKnown RBP6.14□□□□□ -1.43
USP40-204ENST00000427947 BLACEA4D250 179 aa6.13□□□□□ -1.43
USP40-204ENST00000427947 RAC2P15153 192 aa6.13□□□□□ -1.43
USP40-204ENST00000427947 TRHRP34981 398 aaPredicted RBP6.13□□□□□ -1.43
USP40-204ENST00000427947 CEBPAP49715 358 aaPredicted RBP6.13□□□□□ -1.43
USP40-204ENST00000427947 SUMO1P63165 101 aaKnown RBP6.13□□□□□ -1.43
USP40-204ENST00000427947 ACBD5Q5T8D3 534 aaPredicted RBP6.13□□□□□ -1.43
USP40-204ENST00000427947 E4F1Q66K89 784 aaPredicted RBP6.13□□□□□ -1.43
USP40-204ENST00000427947 DENND5AQ6IQ26 1287 aa6.13□□□□□ -1.43
USP40-204ENST00000427947 SLCO6A1Q86UG4 719 aa6.13□□□□□ -1.43
USP40-204ENST00000427947 CCDC103Q8IW40 242 aa6.13□□□□□ -1.43
USP40-204ENST00000427947 NLGN1Q8N2Q7 840 aa6.13□□□□□ -1.43
USP40-204ENST00000427947 C19orf44Q9H6X5 657 aa6.13□□□□□ -1.43
USP40-204ENST00000427947 FANCLQ9NW38 375 aa6.13□□□□□ -1.43
USP40-204ENST00000427947 TMEM260Q9NX78 707 aa6.13□□□□□ -1.43
USP40-204ENST00000427947 SMARCA5O60264 1052 aaPredicted RBP6.12□□□□□ -1.43
USP40-204ENST00000427947 HPXP02790 462 aa6.12□□□□□ -1.43
USP40-204ENST00000427947 KCNAB2Q13303 367 aa6.12□□□□□ -1.43
USP40-204ENST00000427947 HSF5Q4G112 596 aaPredicted RBP6.12□□□□□ -1.43
USP40-204ENST00000427947 TIGD5Q53EQ6 642 aa6.12□□□□□ -1.43
USP40-204ENST00000427947 MBLAC2Q68D91 279 aa6.12□□□□□ -1.43
USP40-204ENST00000427947 HOMER1Q86YM7 354 aa6.12□□□□□ -1.43
USP40-204ENST00000427947 MYLIPQ8WY64 445 aa6.12□□□□□ -1.43
USP40-204ENST00000427947 APPBP2Q92624 585 aa6.12□□□□□ -1.43
USP40-204ENST00000427947 DIO2Q92813 273 aa6.12□□□□□ -1.43
USP40-204ENST00000427947 KISS1RQ969F8 398 aaPredicted RBP6.12□□□□□ -1.43
USP40-204ENST00000427947 JMJD8Q96S16 334 aa6.12□□□□□ -1.43
USP40-204ENST00000427947 MMP19Q99542 508 aa6.12□□□□□ -1.43
USP40-204ENST00000427947 TAF6LQ9Y6J9 622 aa6.12□□□□□ -1.43
USP40-204ENST00000427947 A0A1W2PQ27 194 aa6.11□□□□□ -1.43
USP40-204ENST00000427947 A0A1W2PQ45 241 aaPredicted RBP6.11□□□□□ -1.43
USP40-204ENST00000427947 A0A1W2PQ64 194 aa6.11□□□□□ -1.43
USP40-204ENST00000427947 A0A1W2PQC6 194 aa6.11□□□□□ -1.43
USP40-204ENST00000427947 A0A1W2PQD8 194 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms